D: [iurt_root_command] chroot warning: Macro expanded in comment on line 3: %{_libdir}/R/bin Installing /home/iurt/rpmbuild/SRPMS/R-base-3.6.3-3.mga8.src.rpm Building target platforms: aarch64 Building for target aarch64 Executing(%prep): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.L2keoX + umask 022 + cd /home/iurt/rpmbuild/BUILD + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' + cd /home/iurt/rpmbuild/BUILD + rm -rf R-3.6.3 + /usr/bin/gzip -dc /home/iurt/rpmbuild/SOURCES/R-3.6.3.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd R-3.6.3 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/cat /home/iurt/rpmbuild/SOURCES/R-2.15.3-menu.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + /usr/bin/cat /home/iurt/rpmbuild/SOURCES/R-3.3.0-slow-test.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + /usr/bin/cat /home/iurt/rpmbuild/SOURCES/R-3.6.3-date-test.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + /usr/bin/cat /home/iurt/rpmbuild/SOURCES/R-3.6.3-remove-test-fail-on-aarch64.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.TjTxkV + umask 022 + cd /home/iurt/rpmbuild/BUILD + cd R-3.6.3 + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' + aclocal -I ./m4 + autoconf --force ++ type -p xdg-open + export R_BROWSER=/usr/bin/xdg-open + R_BROWSER=/usr/bin/xdg-open ++ type -p xdg-open + export R_PDFVIEWER=/usr/bin/xdg-open + R_PDFVIEWER=/usr/bin/xdg-open + export R_PRINTCMD=lpr + R_PRINTCMD=lpr ++ echo '-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' ++ sed -e s/-ffast-math/-fno-fast-math/g + export 'CFLAGS=-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + CFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export 'CFLAGS=-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + CFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export 'FFLAGS=-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + FFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export 'CXXFLAGS=-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + CXXFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export 'FCFLAGS=-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + FCFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export 'OBJCFLAGS=-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + OBJCFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export F77=gfortran + F77=gfortran + export JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk + JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk + export FPICFLAGS=-fPIC + FPICFLAGS=-fPIC + unset DISPLAY + CFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export FCFLAGS + LDFLAGS=' -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags' + export LDFLAGS + CONFIGURE_TOP=. + /usr/lib/rpm/mageia/force-as-needed-for-shared-lib-in-libtool Forcing -Wl,--as-needed in configure/libtool to workaround libtool bug (cf http://lists.gnu.org/archive/html/libtool-patches/2004-06/msg00002.html) + /usr/lib/rpm/mageia/fix-libtool-ltmain-from-overlinking + /usr/lib/rpm/mageia/fix-libtool-from-moving-options-after-libs . Fixing libtool inside configure to pass -Wl,xxx options before libraries + /usr/lib/rpm/mageia/fix-dlsearch-path-in-libtool-for-multilib . lib64 Forcing run-time library search path definition in configure to prevent libtool from adding rpath for standard directories (configure was generated with libtool without support for autodetection) + ./configure --host=aarch64-mageia-linux-gnu --build=aarch64-mageia-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-tcltk --with-tcl-config=/usr/lib64/tclConfig.sh --with-tk-config=/usr/lib64/tkConfig.sh --with-cairo --with-libpng --with-jpeglib --with-system-zlib --with-system-bzlib --with-system-pcre --with-system-tre --with-system-xz --with-ICU --with-readline --disable-BLAS-shlib --with-lapack=/usr/lib64 --with-blas=/usr/lib64 --enable-threads=pth --enable-R-profiling --enable-R-shlib --disable-lto configure: WARNING: unrecognized options: --disable-dependency-tracking, --with-system-zlib, --with-system-bzlib, --with-system-pcre, --with-system-xz checking build system type... aarch64-mageia-linux-gnu checking host system type... aarch64-mageia-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /usr/bin/pwd checking whether builddir is srcdir... yes checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /usr/bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for gtar... /usr/bin/gtar checking for tex... /usr/bin/tex checking for pdftex... /usr/bin/pdftex checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for texi2any... /usr/bin/texi2any checking whether texi2any version is at least 5.1... yes checking for ginstall-info... no checking for install-info... no checking for texi2dvi... /usr/bin/texi2dvi checking for kpsewhich... /usr/bin/kpsewhich checking for latex inconsolata package... found zi4.sty checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /usr/bin/gzip checking for bzip2... /usr/bin/bzip2 using default browser ... /usr/bin/xdg-open checking for /usr/bin/xdg-open... /usr/bin/xdg-open checking for working aclocal... found checking for working autoconf... found checking for working autoheader... found checking for bison... bison -y checking for notangle... false checking for realpath... /usr/bin/realpath checking for aarch64-mageia-linux-gnu-pkg-config... /usr/bin/aarch64-mageia-linux-gnu-pkg-config checking for aarch64-mageia-linux-gnu-gcc... aarch64-mageia-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether aarch64-mageia-linux-gnu-gcc accepts -g... yes checking for aarch64-mageia-linux-gnu-gcc option to accept ISO C89... none needed checking how to run the C preprocessor... aarch64-mageia-linux-gnu-gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking whether aarch64-mageia-linux-gnu-gcc needs -traditional... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking how to run the C preprocessor... aarch64-mageia-linux-gnu-gcc -E looking for a modern Fortran compiler checking for aarch64-mageia-linux-gnu-gfortran... aarch64-mageia-linux-gnu-gfortran checking whether we are using the GNU Fortran compiler... yes checking whether aarch64-mageia-linux-gnu-gfortran accepts -g... yes checking for aarch64-mageia-linux-gnu-g++... aarch64-mageia-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether aarch64-mageia-linux-gnu-g++ accepts -g... yes checking whether aarch64-mageia-linux-gnu-g++ -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables can compile C++ code... yes checking how to run the C++ preprocessor... aarch64-mageia-linux-gnu-g++ -E checking whether __attribute__((visibility())) is supported... yes checking whether aarch64-mageia-linux-gnu-gcc accepts -fvisibility... yes checking whether aarch64-mageia-linux-gnu-g++ accepts -fvisibility... yes checking whether aarch64-mageia-linux-gnu-gfortran accepts -fvisibility... yes checking for aarch64-mageia-linux-gnu-gcc... aarch64-mageia-linux-gnu-gcc checking whether we are using the GNU Objective C compiler... yes checking whether aarch64-mageia-linux-gnu-gcc accepts -g... yes checking whether aarch64-mageia-linux-gnu-g++ can compile ObjC++... yes checking for Objective C++ compiler... aarch64-mageia-linux-gnu-g++ checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by aarch64-mageia-linux-gnu-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/aarch64-mageia-linux-gnu-nm -p checking the name lister (/usr/bin/aarch64-mageia-linux-gnu-nm -p) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-mageia-linux-gnu file names to aarch64-mageia-linux-gnu format... func_convert_file_noop checking how to convert aarch64-mageia-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for aarch64-mageia-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for aarch64-mageia-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for aarch64-mageia-linux-gnu-ar... (cached) ar checking for archiver @FILE support... @ checking for aarch64-mageia-linux-gnu-strip... no checking for strip... strip checking for aarch64-mageia-linux-gnu-ranlib... aarch64-mageia-linux-gnu-ranlib checking for gawk... gawk checking command to parse /usr/bin/aarch64-mageia-linux-gnu-nm -p output from aarch64-mageia-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for aarch64-mageia-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if aarch64-mageia-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for aarch64-mageia-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if aarch64-mageia-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if aarch64-mageia-linux-gnu-gcc static flag -static works... no checking if aarch64-mageia-linux-gnu-gcc supports -c -o file.o... yes checking if aarch64-mageia-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the aarch64-mageia-linux-gnu-gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... aarch64-mageia-linux-gnu-g++ -E checking for ld used by aarch64-mageia-linux-gnu-g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the aarch64-mageia-linux-gnu-g++ linker (/usr/bin/ld) supports shared libraries... yes checking for aarch64-mageia-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if aarch64-mageia-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if aarch64-mageia-linux-gnu-g++ static flag -static works... no checking if aarch64-mageia-linux-gnu-g++ supports -c -o file.o... yes checking if aarch64-mageia-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the aarch64-mageia-linux-gnu-g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for aarch64-mageia-linux-gnu-gfortran option to produce PIC... -fPIC checking if aarch64-mageia-linux-gnu-gfortran PIC flag -fPIC works... yes checking if aarch64-mageia-linux-gnu-gfortran static flag -static works... no checking if aarch64-mageia-linux-gnu-gfortran supports -c -o file.o... yes checking if aarch64-mageia-linux-gnu-gfortran supports -c -o file.o... (cached) yes checking whether the aarch64-mageia-linux-gnu-gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking for tilde_expand_word... yes checking whether rl_callback_sigcleanup exists and is declared... yes checking whether rl_completion_matches exists and is declared... yes checking whether rl_resize_terminal exists and is declared... yes checking whether rl_sort_completion_matches exists and is declared... yes checking for ANSI C header files... (cached) yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking for dlfcn.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking glob.h usability... yes checking glob.h presence... yes checking for glob.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for strings.h... (cached) yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking utime.h usability... yes checking utime.h presence... yes checking for utime.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking elf.h usability... yes checking elf.h presence... yes checking for elf.h... yes checking features.h usability... yes checking features.h presence... yes checking for features.h... yes checking floatingpoint.h usability... no checking floatingpoint.h presence... no checking for floatingpoint.h... no checking langinfo.h usability... yes checking langinfo.h presence... yes checking for langinfo.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking stdalign.h usability... yes checking stdalign.h presence... yes checking for stdalign.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for GNU C library with version >= 2... yes checking return type of signal handlers... void checking for uint64_t... yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for aarch64-mageia-linux-gnu-gcc option to accept ISO C99... none needed checking for aarch64-mageia-linux-gnu-gcc option to accept ISO Standard C... (cached) none needed checking for inline... inline checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of double... 8 checking size of size_t... 8 checking for C stack direction... down checking size of long double... 16 checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether aarch64-mageia-linux-gnu-gcc supports -c -o FILE.lo... yes checking for aarch64-mageia-linux-gnu-gcc option to support OpenMP... unsupported checking how to get verbose linking output from aarch64-mageia-linux-gnu-gfortran... -v checking for Fortran libraries of aarch64-mageia-linux-gnu-gfortran... -L/usr/lib/gcc/aarch64-mageia-linux-gnu/9 -L/usr/lib/gcc/aarch64-mageia-linux-gnu/9/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/aarch64-mageia-linux-gnu/9/../../.. -lgfortran -lm checking how to get verbose linking output from aarch64-mageia-linux-gnu-gcc... -v checking for C libraries of aarch64-mageia-linux-gnu-gcc... -L/usr/lib/gcc/aarch64-mageia-linux-gnu/9 -L/usr/lib/gcc/aarch64-mageia-linux-gnu/9/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/aarch64-mageia-linux-gnu/9/../../.. -lgcc_s checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether aarch64-mageia-linux-gnu-gfortran appends underscores to external names... yes checking whether aarch64-mageia-linux-gnu-gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether aarch64-mageia-linux-gnu-gfortran and aarch64-mageia-linux-gnu-gcc agree on int and double... yes checking whether aarch64-mageia-linux-gnu-gfortran and aarch64-mageia-linux-gnu-gcc agree on double complex... yes checking for aarch64-mageia-linux-gnu-gfortran option to support OpenMP... unsupported checking whether aarch64-mageia-linux-gnu-g++ accepts -M for generating dependencies... yes checking whether we can compute ObjC Make dependencies... yes, using $(OBJC) -MM checking for ObjC runtime library... -lobjc checking for ObjC runtime style... unknown checking whether aarch64-mageia-linux-gnu-gcc accepts -fobjc-exceptions... yes ./configure: line 20296: ::: command not found checking if need -fno-optimize-sibling-calls for gfortran... yes checking for type of 'hidden' Fortran character lengths... size_t checking for xmkmf... /usr/bin/xmkmf checking whether aarch64-mageia-linux-gnu-g++ supports C++98 features with -std=gnu++98... yes checking whether aarch64-mageia-linux-gnu-g++ supports C++11 features with -std=gnu++11... yes checking whether aarch64-mageia-linux-gnu-g++ supports C++14 features with -std=gnu++14... yes checking whether aarch64-mageia-linux-gnu-g++ supports C++17 features with -std=gnu++17... yes checking for aarch64-mageia-linux-gnu-g++ -std=gnu++11 option to support OpenMP... unsupported checking for option providing pthread_kill... -pthread checking whether POSIX threads are supported... yes checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log1pl exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... yes checking sunmath.h usability... no checking sunmath.h presence... no checking for sunmath.h... no checking for cospi in -lsunmath... no checking for atanpi... no checking for atan2pi... no checking for cospi... no checking for exp10... yes checking for pown... no checking for sinpi... no checking for tanpi... no checking for __cospi... no checking for __sinpi... no checking for __tanpi... no checking for fseeko... yes checking for ftello... yes checking for matherr... no checking whether fcntl exists and is declared... yes checking whether getgrgid exists and is declared... yes checking whether getpwuid exists and is declared... yes checking whether kill exists and is declared... yes checking whether sigaction exists and is declared... yes checking whether sigaltstack exists and is declared... yes checking whether sigemptyset exists and is declared... yes checking whether fdopen exists and is declared... yes checking whether popen exists and is declared... yes checking whether getline exists and is declared... yes checking whether select exists and is declared... yes checking whether setenv exists and is declared... yes checking whether unsetenv exists and is declared... yes checking whether getrlimit exists and is declared... yes checking whether setrlimit exists and is declared... yes checking whether getrusage exists and is declared... yes checking whether getpriority exists and is declared... yes checking whether chmod exists and is declared... yes checking whether mkfifo exists and is declared... yes checking whether stat exists and is declared... yes checking whether umask exists and is declared... yes checking whether gettimeofday exists and is declared... yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether gmtime_r exists and is declared... yes checking whether localtime_r exists and is declared... yes checking whether nl_langinfo exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether sched_setaffinity exists and is declared... yes checking whether sched_getaffinity exists and is declared... yes checking whether utime exists and is declared... yes checking whether utimensat exists and is declared... yes checking for clock_gettime in -lrt... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... yes checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for dladdr... yes checking for dlsym... yes checking whether dladdr is declared... yes checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking thread.h usability... no checking thread.h presence... no checking for thread.h... no checking whether thr_stksegment exists and is declared... no checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... yes checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for library containing xdr_string... none required checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking whether mktime sets errno... yes checking whether mktime works correctly outside 1902-2037... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes checking for dgemm_ in /usr/lib64... no checking for dgemm_... no checking for sgemm_ in -lopenblas... no checking for ATL_xerbla in -latlas... no checking for dgemm_ in -lblas... yes checking for dgemm_ in -ldgemm... no checking for dgemm_ in 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(cached) yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for struct stat.st_atim.tv_nsec... yes checking whether struct stat.st_atim is of type struct timespec... yes checking for setitimer... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking whether KERN_USRSTACK sysctl is supported... no checking for visible __lib_stack_end... yes checking for paperconf... /usr/bin/paperconf checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for aarch64-mageia-linux-gnu-gfortran option to support OpenMP... (cached) unsupported checking for recommended packages... yes checking whether NLS is requested... yes Configuring src/extra/intl directory checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether we are using the GNU C Library 2 or newer... yes checking for aarch64-mageia-linux-gnu-ranlib... (cached) aarch64-mageia-linux-gnu-ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... no checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... (cached) yes checking whether the inttypes.h PRIxNN macros are broken... no checking for ld used by aarch64-mageia-linux-gnu-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for shared library run path origin... done checking whether imported symbols can be declared weak... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_kill in -lpthread... yes checking for pthread_rwlock_t... yes checking for multithread API to use... posix checking argz.h usability... yes checking argz.h presence... yes checking for argz.h... yes checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... yes checking for mempcpy... (cached) yes checking for munmap... yes checking for stpcpy... yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... yes checking for argz_stringify... yes checking for argz_next... yes checking for __fsetlocking... yes checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... yes checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... yes checking for bison... bison checking version of bison... 3.5.4, ok checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... yes checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for ptrdiff_t... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... no using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands configure: WARNING: unrecognized options: --disable-dependency-tracking, --with-system-zlib, --with-system-bzlib, --with-system-pcre, --with-system-xz R is now configured for aarch64-mageia-linux-gnu Source directory: . Installation directory: /usr C compiler: aarch64-mageia-linux-gnu-gcc -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables Fortran fixed-form compiler: aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables Default C++ compiler: aarch64-mageia-linux-gnu-g++ -std=gnu++11 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables C++98 compiler: aarch64-mageia-linux-gnu-g++ -std=gnu++98 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables C++11 compiler: aarch64-mageia-linux-gnu-g++ -std=gnu++11 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables C++14 compiler: aarch64-mageia-linux-gnu-g++ -std=gnu++14 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables C++17 compiler: aarch64-mageia-linux-gnu-g++ -std=gnu++17 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables Fortran free-form compiler: aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables Obj-C compiler: aarch64-mageia-linux-gnu-gcc -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fobjc-exceptions Interfaces supported: X11, tcltk External libraries: readline, BLAS(generic), LAPACK(generic), curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared R library, R profiling Capabilities skipped: Options not enabled: shared BLAS, memory profiling Recommended packages: yes + /usr/bin/make -O -j8 V=1 VERBOSE=1 make[1]: Nothing to be done for 'R'. make[1]: Nothing to be done for 'R'. make[2]: Nothing to be done for 'R'. make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/scripts' creating src/scripts/R.fe make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/scripts' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/scripts' mkdir -p -- ../../bin make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/scripts' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/include' mkdir -p -- ../../include make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/include' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/include/R_ext' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' making regerror.d from regerror.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' making regcomp.d from regcomp.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' making regexec.d from regexec.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' making tre-match-backtrack.d from tre-match-backtrack.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' making tre-ast.d from tre-ast.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' making tre-compile.d from tre-compile.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' making tre-match-approx.d from tre-match-approx.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' making tre-match-parallel.d from tre-match-parallel.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' making tre-mem.d from tre-mem.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' making tre-stack.d from tre-stack.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' making xmalloc.d from xmalloc.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' making tre-parse.d from tre-parse.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' aarch64-mageia-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c regerror.c -o regerror.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' aarch64-mageia-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c tre-ast.c -o tre-ast.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' aarch64-mageia-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c regcomp.c -o regcomp.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' aarch64-mageia-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c tre-mem.c -o tre-mem.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' aarch64-mageia-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c tre-stack.c -o tre-stack.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' aarch64-mageia-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c regexec.c -o regexec.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' aarch64-mageia-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c xmalloc.c -o xmalloc.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' aarch64-mageia-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' aarch64-mageia-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' aarch64-mageia-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' aarch64-mageia-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c tre-parse.c -o tre-parse.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' aarch64-mageia-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c tre-compile.c -o tre-compile.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o aarch64-mageia-linux-gnu-ranlib libtre.a make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' making interv.d from interv.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' making maxcol.d from maxcol.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' making pretty.d from pretty.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' making integrate.d from integrate.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' making uncmin.d from uncmin.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' making optim.d from optim.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dpbfa.f -o dpbfa.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c interv.c -o interv.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dpbsl.f -o dpbsl.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c maxcol.c -o maxcol.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pretty.c -o pretty.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dpofa.f -o dpofa.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dposl.f -o dposl.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dchdc.f -o dchdc.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dpodi.f -o dpodi.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dqrls.f -o dqrls.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dpoco.f -o dpoco.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dqrdc2.f -o dqrdc2.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dqrdc.f -o dqrdc.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dqrutl.f -o dqrutl.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dqrsl.f -o dqrsl.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dtrsl.f -o dtrsl.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dtrco.f -o dtrco.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c integrate.c -o integrate.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dsvdc.f -o dsvdc.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c uncmin.c -o uncmin.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c optim.c -o optim.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o aarch64-mageia-linux-gnu-ranlib libappl.a make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making mlutils.d from mlutils.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making d1mach.d from d1mach.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making fmax2.d from fmax2.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making i1mach.d from i1mach.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making fprec.d from fprec.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making fmin2.d from fmin2.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making fround.d from fround.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making ftrunc.d from ftrunc.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making fsign.d from fsign.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making sign.d from sign.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making imax2.d from imax2.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making imin2.d from imin2.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making chebyshev.d from chebyshev.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making log1p.d from log1p.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making lgammacor.d from lgammacor.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making gammalims.d from gammalims.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making stirlerr.d from stirlerr.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making bd0.d from bd0.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making gamma.d from gamma.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making lgamma.d from lgamma.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making gamma_cody.d from gamma_cody.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making beta.d from beta.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making lbeta.d from lbeta.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making cospi.d from cospi.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making polygamma.d from polygamma.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making bessel_i.d from bessel_i.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making bessel_j.d from bessel_j.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making bessel_k.d from bessel_k.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making bessel_y.d from bessel_y.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making choose.d from choose.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making snorm.d from snorm.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making sexp.d from sexp.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dgamma.d from dgamma.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making pgamma.d from pgamma.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dbeta.d from dbeta.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making rgamma.d from rgamma.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qgamma.d from qgamma.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making pbeta.d from pbeta.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qbeta.d from qbeta.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making rbeta.d from rbeta.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dunif.d from dunif.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making punif.d from punif.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qunif.d from qunif.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making runif.d from runif.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dnorm.d from dnorm.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making pnorm.d from pnorm.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qnorm.d from qnorm.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making rnorm.d from rnorm.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dlnorm.d from dlnorm.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making plnorm.d from plnorm.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qlnorm.d from qlnorm.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making rlnorm.d from rlnorm.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making df.d from df.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making pf.d from pf.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making rf.d from rf.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qf.d from qf.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dnf.d from dnf.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dt.d from dt.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making pt.d from pt.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qt.d from qt.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making rt.d from rt.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dnt.d from dnt.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dchisq.d from dchisq.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making pchisq.d from pchisq.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qchisq.d from qchisq.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making rnchisq.d from rnchisq.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dbinom.d from dbinom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making rchisq.d from rchisq.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making pbinom.d from pbinom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qbinom.d from qbinom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dcauchy.d from dcauchy.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making pcauchy.d from pcauchy.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making rbinom.d from rbinom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making rmultinom.d from rmultinom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qcauchy.d from qcauchy.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making rcauchy.d from rcauchy.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making pexp.d from pexp.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dexp.d from dexp.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qexp.d from qexp.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making rexp.d from rexp.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dgeom.d from dgeom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making pgeom.d from pgeom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qgeom.d from qgeom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making rgeom.d from rgeom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dhyper.d from dhyper.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making phyper.d from phyper.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qhyper.d from qhyper.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dnbinom.d from dnbinom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making rhyper.d from rhyper.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making pnbinom.d from pnbinom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making rnbinom.d from rnbinom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dpois.d from dpois.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qnbinom.d from qnbinom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making ppois.d from ppois.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dweibull.d from dweibull.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making rpois.d from rpois.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making pweibull.d from pweibull.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qpois.d from qpois.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qweibull.d from qweibull.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making rweibull.d from rweibull.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dlogis.d from dlogis.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making plogis.d from plogis.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qlogis.d from qlogis.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making rlogis.d from rlogis.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dnchisq.d from dnchisq.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making pnchisq.d from pnchisq.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qnchisq.d from qnchisq.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making dnbeta.d from dnbeta.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qnbeta.d from qnbeta.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making pnbeta.d from pnbeta.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making pnf.d from pnf.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making pnt.d from pnt.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qnf.d from qnf.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qtukey.d from qtukey.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making ptukey.d from ptukey.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making qnt.d from qnt.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making toms708.d from toms708.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making signrank.d from signrank.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' making wilcox.d from wilcox.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mlutils.c -o mlutils.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fmax2.c -o fmax2.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c d1mach.c -o d1mach.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c i1mach.c -o i1mach.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ftrunc.c -o ftrunc.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fprec.c -o fprec.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fmin2.c -o fmin2.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fround.c -o fround.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sign.c -o sign.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c imax2.c -o imax2.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fsign.c -o fsign.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c imin2.c -o imin2.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c log1p.c -o log1p.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chebyshev.c -o chebyshev.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lgammacor.c -o lgammacor.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gammalims.c -o gammalims.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c stirlerr.c -o stirlerr.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bd0.c -o bd0.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lgamma.c -o lgamma.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gamma.c -o gamma.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c beta.c -o beta.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gamma_cody.c -o gamma_cody.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lbeta.c -o lbeta.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cospi.c -o cospi.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c choose.c -o choose.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sexp.c -o sexp.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c snorm.c -o snorm.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgamma.c -o dgamma.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_i.c -o bessel_i.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c polygamma.c -o polygamma.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_y.c -o bessel_y.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_k.c -o bessel_k.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_j.c -o bessel_j.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dbeta.c -o dbeta.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pbeta.c -o pbeta.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rgamma.c -o rgamma.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dunif.c -o dunif.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c punif.c -o punif.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qgamma.c -o qgamma.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rbeta.c -o rbeta.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c runif.c -o runif.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qunif.c -o qunif.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pgamma.c -o pgamma.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnorm.c -o dnorm.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rnorm.c -o rnorm.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plnorm.c -o plnorm.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dlnorm.c -o dlnorm.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qlnorm.c -o qlnorm.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnorm.c -o qnorm.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rlnorm.c -o rlnorm.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnorm.c -o pnorm.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rf.c -o rf.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c df.c -o df.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qf.c -o qf.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pf.c -o pf.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnf.c -o dnf.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dt.c -o dt.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pt.c -o pt.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rt.c -o rt.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dchisq.c -o dchisq.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnt.c -o dnt.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pchisq.c -o pchisq.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qchisq.c -o qchisq.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qbeta.c -o qbeta.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rchisq.c -o rchisq.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rnchisq.c -o rnchisq.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dbinom.c -o dbinom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pbinom.c -o pbinom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qt.c -o qt.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dcauchy.c -o dcauchy.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pcauchy.c -o pcauchy.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qbinom.c -o qbinom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rmultinom.c -o rmultinom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rcauchy.c -o rcauchy.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qcauchy.c -o qcauchy.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dexp.c -o dexp.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pexp.c -o pexp.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rbinom.c -o rbinom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rexp.c -o rexp.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qexp.c -o qexp.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgeom.c -o dgeom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pgeom.c -o pgeom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rgeom.c -o rgeom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qgeom.c -o qgeom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dhyper.c -o dhyper.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c phyper.c -o phyper.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qhyper.c -o qhyper.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnbinom.c -o dnbinom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnbinom.c -o pnbinom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rnbinom.c -o rnbinom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnbinom.c -o qnbinom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ppois.c -o ppois.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dpois.c -o dpois.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dweibull.c -o dweibull.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qpois.c -o qpois.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pweibull.c -o pweibull.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rweibull.c -o rweibull.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rhyper.c -o rhyper.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qweibull.c -o qweibull.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dlogis.c -o dlogis.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rpois.c -o rpois.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plogis.c -o plogis.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rlogis.c -o rlogis.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qlogis.c -o qlogis.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnchisq.c -o dnchisq.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnbeta.c -o dnbeta.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnchisq.c -o qnchisq.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnf.c -o pnf.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnbeta.c -o qnbeta.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnbeta.c -o pnbeta.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnf.c -o qnf.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnt.c -o qnt.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnchisq.c -o pnchisq.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnt.c -o pnt.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qtukey.c -o qtukey.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ptukey.c -o ptukey.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c signrank.c -o signrank.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c wilcox.c -o wilcox.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c toms708.c -o toms708.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o aarch64-mageia-linux-gnu-ranlib libnmath.a make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' config.status: creating src/unix/Makefile make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' making Rembedded.d from Rembedded.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' making dynload.d from dynload.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' making X11.d from X11.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' making system.d from system.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' making sys-unix.d from sys-unix.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' making sys-std.d from sys-std.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Rembedded.c -o Rembedded.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dynload.c -o dynload.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c X11.c -o X11.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c system.c -o system.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sys-unix.c -o sys-unix.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sys-std.c -o sys-std.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o aarch64-mageia-linux-gnu-ranlib libunix.a make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -DR_HOME='"/home/iurt/rpmbuild/BUILD/R-3.6.3"' \ -o Rscript ./Rscript.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' config.status: creating src/main/Makefile make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making CommandLineArgs.d from CommandLineArgs.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making RNG.d from RNG.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making Renviron.d from Renviron.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making agrep.d from agrep.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making altrep.d from altrep.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making Rdynload.d from Rdynload.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making apply.d from apply.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making altclasses.d from altclasses.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making arithmetic.d from arithmetic.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making attrib.d from attrib.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making bind.d from bind.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making array.d from array.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making character.d from character.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making builtin.d from builtin.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making coerce.d from coerce.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making colors.d from colors.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making complex.d from complex.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making cum.d from cum.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making context.d from context.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making datetime.d from datetime.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making dcf.d from dcf.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making connections.d from connections.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making deparse.d from deparse.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making dstruct.d from dstruct.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making dotcode.d from dotcode.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making dounzip.d from dounzip.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making duplicate.d from duplicate.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making devices.d from devices.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making debug.d from debug.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making edit.d from edit.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making engine.d from engine.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making envir.d from envir.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making format.d from format.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making gevents.d from gevents.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making errors.d from errors.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making eval.d from eval.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making gram.d from gram.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making gram-ex.d from gram-ex.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making graphics.d from graphics.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making grep.d from grep.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making identical.d from identical.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making inlined.d from inlined.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making inspect.d from inspect.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making internet.d from internet.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making iosupport.d from iosupport.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making lapack.d from lapack.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making localecharset.d from localecharset.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making list.d from list.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making mapply.d from mapply.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making logic.d from logic.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making match.d from match.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making main.d from main.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making memory.d from memory.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making names.d from names.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making objects.d from objects.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making options.d from options.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making paste.d from paste.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making plot.d from plot.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making platform.d from platform.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making plot3d.d from plot3d.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making printvector.d from printvector.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making plotmath.d from plotmath.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making printarray.d from printarray.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making qsort.d from qsort.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making print.d from print.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making radixsort.d from radixsort.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making rlocale.d from rlocale.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making printutils.d from printutils.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making raw.d from raw.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making random.d from random.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making registration.d from registration.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making relop.d from relop.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making saveload.d from saveload.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making seq.d from seq.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making sort.d from sort.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making split.d from split.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making scan.d from scan.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making sprintf.d from sprintf.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making source.d from source.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making serialize.d from serialize.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making startup.d from startup.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making subscript.d from subscript.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making subassign.d from subassign.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making subset.d from subset.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making summary.d from summary.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making sysutils.d from sysutils.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making times.d from times.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making unique.d from unique.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making version.d from version.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making g_alab_her.d from g_alab_her.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making g_cntrlify.d from g_cntrlify.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making g_fontdb.d from g_fontdb.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making alloca.d from alloca.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making Rmain.d from Rmain.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making util.d from util.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making strncasecmp.d from strncasecmp.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making strdup.d from strdup.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making g_her_glyph.d from g_her_glyph.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' making mkdtemp.d from mkdtemp.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c CommandLineArgs.c -o CommandLineArgs.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Renviron.c -o Renviron.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c RNG.c -o RNG.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c altrep.c -o altrep.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c apply.c -o apply.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Rdynload.c -o Rdynload.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c altclasses.c -o altclasses.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agrep.c -o agrep.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c colors.c -o colors.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c builtin.c -o builtin.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c complex.c -o complex.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c character.c -o character.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c attrib.c -o attrib.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cum.c -o cum.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c context.c -o context.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dcf.c -o dcf.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c debug.c -o debug.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c array.c -o array.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bind.c -o bind.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c devices.c -o devices.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dstruct.c -o dstruct.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c arithmetic.c -o arithmetic.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dounzip.c -o dounzip.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c edit.c -o edit.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coerce.c -o coerce.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c duplicate.c -o duplicate.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c deparse.c -o deparse.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c datetime.c -o datetime.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c format.c -o format.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gevents.c -o gevents.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gram-ex.c -o gram-ex.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c graphics.c -o graphics.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dotcode.c -o dotcode.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c engine.c -o engine.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c errors.c -o errors.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c identical.c -o identical.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c connections.c -o connections.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c inlined.c -o inlined.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c inspect.c -o inspect.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c internet.c -o internet.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c iosupport.c -o iosupport.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lapack.c -o lapack.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c localecharset.c -o localecharset.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c list.c -o list.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mapply.c -o mapply.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c match.c -o match.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c main.c -o main.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c names.c -o names.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c logic.c -o logic.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c envir.c -o envir.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gram.c -o gram.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c paste.c -o paste.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c options.c -o options.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plot.c -o plot.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c objects.c -o objects.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plot3d.c -o plot3d.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c printvector.c -o printvector.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c platform.c -o platform.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c printarray.c -o printarray.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c grep.c -o grep.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c print.c -o print.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qsort.c -o qsort.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c printutils.c -o printutils.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c registration.c -o registration.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rlocale.c -o rlocale.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c raw.c -o raw.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c random.c -o random.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c memory.c -o memory.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plotmath.c -o plotmath.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c radixsort.c -o radixsort.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c source.c -o source.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c scan.c -o scan.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c saveload.c -o saveload.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c split.c -o split.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c startup.c -o startup.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c relop.c -o relop.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sprintf.c -o sprintf.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c seq.c -o seq.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c serialize.c -o serialize.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sort.c -o sort.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c times.c -o times.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c subscript.c -o subscript.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c version.c -o version.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sysutils.c -o sysutils.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c g_alab_her.c -o g_alab_her.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c summary.c -o summary.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c g_fontdb.c -o g_fontdb.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c g_cntrlify.c -o g_cntrlify.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c xxxpr.f -o xxxpr.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c g_her_glyph.c -o g_her_glyph.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c subset.c -o subset.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c util.c -o util.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c unique.c -o unique.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c subassign.c -o subassign.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c eval.c -o eval.o In file included from /usr/include/string.h:495, from ../../src/include/Rinlinedfuns.h:73, from ../../src/include/Rinternals.h:1552, from ../../src/include/Defn.h:81, from eval.c:27: In function 'strncpy', inlined from 'inflateAssignmentCall' at eval.c:6083:5, inlined from 'R_getBCInterpreterExpression' at eval.c:6136:8: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eval.c: In function 'R_getBCInterpreterExpression': eval.c:6076:19: note: length computed here 6076 | size_t slen = strlen(name); | ^~~~~~~~~~~~ make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -shared -pthread -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a -lblas -lgfortran -lm -lreadline -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' mkdir -p -- /home/iurt/rpmbuild/BUILD/R-3.6.3/bin/exec make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' mkdir -p -- /home/iurt/rpmbuild/BUILD/R-3.6.3/lib make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Rmain.c -o Rmain.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' aarch64-mageia-linux-gnu-gcc -Wl,--export-dynamic -pthread -L"../../lib" -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o R.bin Rmain.o -lR make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' making nanoftp.d from nanoftp.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' making Rsock.d from Rsock.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' making rotated.d from rotated.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' making Rhttpd.d from Rhttpd.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/lapack' making Lapack.d from Lapack.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/lapack' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' making internet.d from internet.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' making libcurl.d from libcurl.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' making nanohttp.d from nanohttp.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' making sock.d from sock.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' making rbitmap.d from rbitmap.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' making sockconn.d from sockconn.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' making devX11.d from devX11.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c Rsock.c -o Rsock.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c nanoftp.c -o nanoftp.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c internet.c -o internet.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c nanohttp.c -o nanohttp.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c sock.c -o sock.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c sockconn.c -o sockconn.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' aarch64-mageia-linux-gnu-gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/fribidi -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libdrm -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rbitmap.c -o rbitmap.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c libcurl.c -o libcurl.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' aarch64-mageia-linux-gnu-gcc -shared -L"../../../lib" -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -lcurl -lR make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' mkdir -p -- /home/iurt/rpmbuild/BUILD/R-3.6.3/modules make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' aarch64-mageia-linux-gnu-gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/fribidi -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libdrm -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rotated.c -o rotated.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/lapack' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Lapack.c -o Lapack.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/lapack' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/lapack' aarch64-mageia-linux-gnu-gcc -shared -L"../../../lib" -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o lapack.so Lapack.o -lR -llapack -lblas -lgfortran -lm make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/lapack' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' aarch64-mageia-linux-gnu-gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/fribidi -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libdrm -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c devX11.c -o devX11.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' aarch64-mageia-linux-gnu-gcc -shared -L"../../../lib" -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lz -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lXmu -lR -lm make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' aarch64-mageia-linux-gnu-gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/fribidi -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libdrm -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dataentry.c -o dataentry.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' aarch64-mageia-linux-gnu-gcc -shared -L"../../../lib" -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lXmu -lR -lm make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library' mkdir -p -- ../../library make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/profile' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/translations' building package 'translations' mkdir -p -- ../../../library/translations make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/translations' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/base' building package 'base' make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/base' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/base' mkdir -p -- ../../../library/base/demo make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/base' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools' mkdir -p -- ../../../library/tools/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' making md5.d from md5.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' making init.d from init.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' making text.d from text.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' making Rmd5.d from Rmd5.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' making http.d from http.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' making getfmts.d from getfmts.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' making signals.d from signals.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' making install.d from install.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' making gramLatex.d from gramLatex.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' making gramRd.d from gramRd.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Rmd5.c -o Rmd5.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c http.c -o http.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c signals.c -o signals.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c text.c -o text.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c getfmts.c -o getfmts.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c md5.c -o md5.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c install.c -o install.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gramLatex.c -o gramLatex.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gramRd.c -o gramRd.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' aarch64-mageia-linux-gnu-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[6]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[6]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools' installing 'sysdata.rda' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/compiler' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/compiler' mkdir -p -- ../../../library/compiler/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/compiler' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/compiler' byte-compiling package 'compiler' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/compiler' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/base' byte-compiling package 'base' make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/base' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools' byte-compiling package 'tools' make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tools' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils' mkdir -p -- ../../../library/utils/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils' mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' making init.d from init.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' making size.d from size.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' making io.d from io.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' making stubs.d from stubs.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' making sock.d from sock.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' making utils.d from utils.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sock.c -o sock.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c utils.c -o utils.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c stubs.c -o stubs.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c size.c -o size.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c io.c -o io.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' aarch64-mageia-linux-gnu-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' make[6]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' mkdir -p -- ../../../../library/utils/libs make[6]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils' installing 'sysdata.rda' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils' byte-compiling package 'utils' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/utils' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices' mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/icc make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' making chull.d from chull.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' making axis_scales.d from axis_scales.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' making init.d from init.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' making devices.d from devices.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' making stubs.d from stubs.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' making devCairo.d from devCairo.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' making devPicTeX.d from devPicTeX.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' making colors.d from colors.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' making devQuartz.d from devQuartz.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' making devPS.d from devPS.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c axis_scales.c -o axis_scales.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c devCairo.c -o devCairo.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c stubs.c -o stubs.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c devQuartz.c -o devQuartz.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chull.c -o chull.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c devices.c -o devices.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c devPicTeX.c -o devPicTeX.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c colors.c -o colors.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c devPS.c -o devPS.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' aarch64-mageia-linux-gnu-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[6]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[6]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src' make[7]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src/cairo' making cairoBM.d from cairoBM.c make[7]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src/cairo' make[9]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src/cairo' aarch64-mageia-linux-gnu-gcc -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/fribidi -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libdrm -I../../../../../src/modules/X11 -I/usr/local/include -DHAVE_CONFIG_H -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cairoBM.c -o cairoBM.o make[9]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src/cairo' make[9]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src/cairo' aarch64-mageia-linux-gnu-gcc -shared -L"../../../../../lib" -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lz -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -L"../../../../../lib" -lR -lm make[9]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices/src/cairo' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices' byte-compiling package 'grDevices' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grDevices' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics' mkdir -p -- ../../../library/graphics/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' making init.d from init.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' making base.d from base.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' making graphics.d from graphics.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' making par.d from par.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' making plot.d from plot.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' making plot3d.d from plot3d.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' making stem.d from stem.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c stem.c -o stem.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c base.c -o base.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c graphics.c -o graphics.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plot3d.c -o plot3d.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c par.c -o par.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plot.c -o plot.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' aarch64-mageia-linux-gnu-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' make[6]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' mkdir -p -- ../../../../library/graphics/libs make[6]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics' byte-compiling package 'graphics' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/graphics' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats' mkdir -p -- ../../../library/stats/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making init.d from init.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making kmeans.d from kmeans.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making ansari.d from ansari.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making bandwidths.d from bandwidths.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making chisqsim.d from chisqsim.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making fexact.d from fexact.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making d2x2xk.d from d2x2xk.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making kendall.d from kendall.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making ks.d from ks.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making line.d from line.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making prho.d from prho.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making smooth.d from smooth.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making swilk.d from swilk.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making ksmooth.d from ksmooth.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making loessc.d from loessc.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making monoSpl.d from monoSpl.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making isoreg.d from isoreg.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making dblcen.d from dblcen.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making Srunmed.d from Srunmed.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making distance.d from distance.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making hclust-utils.d from hclust-utils.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making nls.d from nls.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making rWishart.d from rWishart.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making HoltWinters.d from HoltWinters.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making arima.d from arima.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making PPsum.d from PPsum.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making filter.d from filter.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making mAR.d from mAR.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making burg.d from burg.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making pacf.d from pacf.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making port.d from port.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making starma.d from starma.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making family.d from family.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making sbart.d from sbart.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making approx.d from approx.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making loglin.d from loglin.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making massdist.d from massdist.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making lowess.d from lowess.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making lm.d from lm.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making complete_cases.d from complete_cases.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making splines.d from splines.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making fft.d from fft.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making cov.d from cov.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making deriv.d from deriv.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making fourier.d from fourier.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making model.d from model.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making integrate.d from integrate.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making optimize.d from optimize.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making optim.d from optim.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making random.d from random.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making zeroin.d from zeroin.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making rcont.d from rcont.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making distn.d from distn.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' making influence.d from influence.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c d2x2xk.c -o d2x2xk.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ansari.c -o ansari.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bandwidths.c -o bandwidths.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chisqsim.c -o chisqsim.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c kendall.c -o kendall.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c kmeans.c -o kmeans.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c line.c -o line.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ks.c -o ks.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c prho.c -o prho.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c monoSpl.c -o monoSpl.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c swilk.c -o swilk.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c smooth.c -o smooth.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dblcen.c -o dblcen.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c isoreg.c -o isoreg.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ksmooth.c -o ksmooth.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c hclust-utils.c -o hclust-utils.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c loessc.c -o loessc.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c distance.c -o distance.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c HoltWinters.c -o HoltWinters.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c PPsum.c -o PPsum.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rWishart.c -o rWishart.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c nls.c -o nls.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c burg.c -o burg.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c filter.c -o filter.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Srunmed.c -o Srunmed.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c family.c -o family.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c port.c -o port.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sbart.c -o sbart.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c approx.c -o approx.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pacf.c -o pacf.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c massdist.c -o massdist.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c starma.c -o starma.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lowess.c -o lowess.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c loglin.c -o loglin.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lm.c -o lm.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c splines.c -o splines.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c complete_cases.c -o complete_cases.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fexact.c -o fexact.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fft.c -o fft.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fourier.c -o fourier.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c arima.c -o arima.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mAR.c -o mAR.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c integrate.c -o integrate.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c zeroin.c -o zeroin.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rcont.c -o rcont.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c influence.c -o influence.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c optimize.c -o optimize.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c optim.c -o optim.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bsplvd.f -o bsplvd.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bvalus.f -o bvalus.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bvalue.f -o bvalue.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qsbart.f -o qsbart.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sgram.f -o sgram.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sinerp.f -o sinerp.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cov.c -o cov.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c stxwx.f -o stxwx.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sslvrg.f -o sslvrg.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c distn.c -o distn.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c eureka.f -o eureka.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c hclust.f -o hclust.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c kmns.f -o kmns.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c deriv.c -o deriv.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lminfl.f -o lminfl.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c stl.f -o stl.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ppr.f -o ppr.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c random.c -o random.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c loessf.f -o loessf.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c model.c -o model.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gfortran -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c portsrc.f -o portsrc.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' aarch64-mageia-linux-gnu-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -llapack -lblas -lgfortran -lm -L../../../../lib -lR make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[6]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[6]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats' byte-compiling package 'stats' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/datasets' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/datasets' mkdir -p -- ../../../library/datasets/data make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/datasets' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods' mkdir -p -- ../../../library/methods/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' making init.d from init.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' making slot.d from slot.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' making do_substitute_direct.d from do_substitute_direct.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' making methods_list_dispatch.d from methods_list_dispatch.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' making class_support.d from class_support.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' making tests.d from tests.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' making utils.d from utils.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c slot.c -o slot.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c tests.c -o tests.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c class_support.c -o class_support.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c do_substitute_direct.c -o do_substitute_direct.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c utils.c -o utils.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c methods_list_dispatch.c -o methods_list_dispatch.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' aarch64-mageia-linux-gnu-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' make[6]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[6]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods' byte-compiling 'methods' initializing class and method definitions ... done make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/methods' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid' mkdir -p -- ../../../library/grid/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' making gpar.d from gpar.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' making grid.d from grid.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' making just.d from just.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' making layout.d from layout.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' making matrix.d from matrix.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' making register.d from register.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' making state.d from state.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' making unit.d from unit.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' making util.d from util.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' making viewport.d from viewport.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c just.c -o just.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c register.c -o register.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c matrix.c -o matrix.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c layout.c -o layout.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c util.c -o util.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c state.c -o state.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c viewport.c -o viewport.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gpar.c -o gpar.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c unit.c -o unit.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c grid.c -o grid.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' aarch64-mageia-linux-gnu-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[6]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[6]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid' byte-compiling package 'grid' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/grid' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/splines' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/splines' mkdir -p -- ../../../library/splines/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/splines' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/splines/src' making splines.d from splines.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/splines/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/splines/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c splines.c -o splines.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/splines/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/splines/src' aarch64-mageia-linux-gnu-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o splines.so splines.o -L../../../../lib -lR make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/splines/src' make[6]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[6]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/splines/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/splines' byte-compiling package 'splines' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/splines' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats4' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats4' mkdir -p -- ../../../library/stats4/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats4' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats4' byte-compiling package 'stats4' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/stats4' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk' mkdir -p -- ../../../library/tcltk/exec make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk/src' making init.d from init.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk/src' making tcltk.d from tcltk.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk/src' making tcltk_unix.d from tcltk_unix.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c tcltk_unix.c -o tcltk_unix.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c tcltk.c -o tcltk.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk/src' aarch64-mageia-linux-gnu-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib64 -ltcl8.6 -L/usr/lib64 -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk' byte-compiling package 'tcltk' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/tcltk' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel' mkdir -p -- ../../../library/parallel/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel/src' making init.d from init.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel/src' making rngstream.d from rngstream.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel/src' making fork.d from fork.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rngstream.c -o rngstream.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel/src' aarch64-mageia-linux-gnu-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fork.c -o fork.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel/src' aarch64-mageia-linux-gnu-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel/src' make[6]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[6]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel' byte-compiling package 'parallel' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/parallel' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library' installing parsed NAMESPACE files make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library' make[1]: Nothing to be done for 'R'. you should 'make docs' now ... make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3' configuring Java ... Java interpreter : /usr/lib/jvm/java-1.8.0-openjdk/jre/bin/java Java version : 1.8.0_242 Java home path : /usr/lib/jvm/java-1.8.0-openjdk Java compiler : /usr/lib/jvm/java-1.8.0-openjdk/bin/javac Java headers gen.: /usr/lib/jvm/java-1.8.0-openjdk/bin/javah Java archive tool: /usr/lib/jvm/java-1.8.0-openjdk/bin/jar trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux detected JNI linker flags : -L$(JAVA_HOME)/jre/lib/aarch64/server -ljvm make[2]: Entering directory '/tmp/Rjavareconf.9uXBDM' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/lib/jvm/java-1.8.0-openjdk/include -I/usr/lib/jvm/java-1.8.0-openjdk/include/linux -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c conftest.c -o conftest.o aarch64-mageia-linux-gnu-gcc -shared -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o conftest.so conftest.o -L/usr/lib/jvm/java-1.8.0-openjdk/jre/lib/aarch64/server -ljvm -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -lR make[2]: Leaving directory '/tmp/Rjavareconf.9uXBDM' JAVA_HOME : /usr/lib/jvm/java-1.8.0-openjdk Java library path: $(JAVA_HOME)/jre/lib/aarch64/server JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux JNI linker flags : -L$(JAVA_HOME)/jre/lib/aarch64/server -ljvm Updating Java configuration in /home/iurt/rpmbuild/BUILD/R-3.6.3 Done. make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc' creating doc/NEWS make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc' creating doc/NEWS.pdf make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' creating doc/manual/version.texi make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' creating doc/manual/R-FAQ.html make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' creating doc/manual/R-data.html make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' creating doc/manual/R-ints.html make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' creating doc/manual/R-lang.html make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' creating doc/manual/R-admin.html make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' creating doc/manual/R-intro.html make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' creating doc/manual/R-exts.html make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library' installing parsed Rd make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library' datasets make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library' grid make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library' 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'/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library' writing package indices make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' begin installing recommended package lattice make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' begin installing recommended package MASS make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' begin installing recommended package codetools make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' begin installing recommended package foreign make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' begin installing recommended package KernSmooth make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' begin installing recommended package rpart make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' begin installing recommended package nnet make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' begin installing recommended package spatial make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' * installing *source* package 'codetools' ... ** package 'codetools' successfully unpacked and MD5 sums checked ** using non-staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (codetools) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' * installing *source* package 'spatial' ... ** package 'spatial' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmpl1bL8t/R.INSTALL69c35e2081a7/spatial/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/Rtmpl1bL8t/R.INSTALL69c35e2081a7/spatial/src' make[3]: Entering directory '/tmp/Rtmpl1bL8t/R.INSTALL69c35e2081a7/spatial/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c krc.c -o krc.o make[3]: Leaving directory '/tmp/Rtmpl1bL8t/R.INSTALL69c35e2081a7/spatial/src' make[3]: Entering directory '/tmp/Rtmpl1bL8t/R.INSTALL69c35e2081a7/spatial/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pps.c -o pps.o make[3]: Leaving directory '/tmp/Rtmpl1bL8t/R.INSTALL69c35e2081a7/spatial/src' make[3]: Entering directory '/tmp/Rtmpl1bL8t/R.INSTALL69c35e2081a7/spatial/src' aarch64-mageia-linux-gnu-gcc -shared -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o spatial.so init.o krc.o pps.o -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -lR make[3]: Leaving directory '/tmp/Rtmpl1bL8t/R.INSTALL69c35e2081a7/spatial/src' installing to /home/iurt/rpmbuild/BUILD/R-3.6.3/library/spatial/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (spatial) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' * installing *source* package 'nnet' ... ** package 'nnet' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpC0i1a7/R.INSTALL69be7caf0215/nnet/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c nnet.c -o nnet.o make[3]: Leaving directory '/tmp/RtmpC0i1a7/R.INSTALL69be7caf0215/nnet/src' make[3]: Entering directory '/tmp/RtmpC0i1a7/R.INSTALL69be7caf0215/nnet/src' aarch64-mageia-linux-gnu-gcc -shared -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o nnet.so nnet.o -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -lR make[3]: Leaving directory '/tmp/RtmpC0i1a7/R.INSTALL69be7caf0215/nnet/src' installing to /home/iurt/rpmbuild/BUILD/R-3.6.3/library/nnet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nnet) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' * installing *source* package 'KernSmooth' ... ** package 'KernSmooth' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c blkest.f -o blkest.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cp.f -o cp.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgedi.f -o dgedi.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgefa.f -o dgefa.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgesl.f -o dgesl.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c linbin.f -o linbin.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c linbin2D.f -o linbin2D.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c locpoly.f -o locpoly.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rlbin.f -o rlbin.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sdiag.f -o sdiag.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sstdiag.f -o sstdiag.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' aarch64-mageia-linux-gnu-gcc -shared -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -lblas -lgfortran -lm -lgfortran -lm -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -lR make[3]: Leaving directory '/tmp/RtmpSJI3HL/R.INSTALL69ac42588d3f/KernSmooth/src' installing to /home/iurt/rpmbuild/BUILD/R-3.6.3/library/KernSmooth/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (KernSmooth) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' * installing *source* package 'foreign' ... ** package 'foreign' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c R_systat.c -o R_systat.o make[3]: Leaving directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' make[3]: Entering directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Rdbfread.c -o Rdbfread.o make[3]: Leaving directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' make[3]: Entering directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Rdbfwrite.c -o Rdbfwrite.o make[3]: Leaving directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' make[3]: Entering directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c SASxport.c -o SASxport.o make[3]: Leaving directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' make[3]: Entering directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c avl.c -o avl.o make[3]: Leaving directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' make[3]: Entering directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dbfopen.c -o dbfopen.o make[3]: Leaving directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' make[3]: Entering directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c file-handle.c -o file-handle.o make[3]: Leaving directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' make[3]: Entering directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c format.c -o format.o make[3]: Leaving directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' make[3]: Entering directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' make[3]: Entering directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c minitab.c -o minitab.o make[3]: Leaving directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' make[3]: Entering directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pfm-read.c -o pfm-read.o make[3]: Leaving directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' make[3]: Entering directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c spss.c -o spss.o make[3]: Leaving directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' make[3]: Entering directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sfm-read.c -o sfm-read.o make[3]: Leaving directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' make[3]: Entering directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c stataread.c -o stataread.o make[3]: Leaving directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' make[3]: Entering directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' aarch64-mageia-linux-gnu-gcc -shared -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -lR make[3]: Leaving directory '/tmp/RtmpbXw3wn/R.INSTALL69b43ab9f084/foreign/src' installing to /home/iurt/rpmbuild/BUILD/R-3.6.3/library/foreign/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (foreign) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' * installing *source* package 'rpart' ... ** package 'rpart' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c anova.c -o anova.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c anovapred.c -o anovapred.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c branch.c -o branch.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bsplit.c -o bsplit.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c choose_surg.c -o choose_surg.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fix_cp.c -o fix_cp.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c free_tree.c -o free_tree.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gini.c -o gini.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c graycode.c -o graycode.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c insert_split.c -o insert_split.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c make_cp_list.c -o make_cp_list.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c make_cp_table.c -o make_cp_table.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mysort.c -o mysort.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c partition.c -o partition.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c nodesplit.c -o nodesplit.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pred_rpart.c -o pred_rpart.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c poisson.c -o poisson.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c print_tree.c -o print_tree.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rpartexp.c -o rpartexp.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rpart_callback.c -o rpart_callback.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rpartexp2.c -o rpartexp2.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rpart.c -o rpart.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rpcountup.c -o rpcountup.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rundown.c -o rundown.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rundown2.c -o rundown2.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rpmatrix.c -o rpmatrix.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c surrogate.c -o surrogate.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c usersplit.c -o usersplit.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c xpred.c -o xpred.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c xval.c -o xval.o make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' make[3]: Entering directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' aarch64-mageia-linux-gnu-gcc -shared -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -lR make[3]: Leaving directory '/tmp/Rtmpmff06k/R.INSTALL69c1fdc7808/rpart/src' installing to /home/iurt/rpmbuild/BUILD/R-3.6.3/library/rpart/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rpart) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' * installing *source* package 'MASS' ... ** package 'MASS' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmp5hl3FV/R.INSTALL69bc4632138d/MASS/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c MASS.c -o MASS.o make[3]: Leaving directory '/tmp/Rtmp5hl3FV/R.INSTALL69bc4632138d/MASS/src' make[3]: Entering directory '/tmp/Rtmp5hl3FV/R.INSTALL69bc4632138d/MASS/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lqs.c -o lqs.o make[3]: Leaving directory '/tmp/Rtmp5hl3FV/R.INSTALL69bc4632138d/MASS/src' make[3]: Entering directory '/tmp/Rtmp5hl3FV/R.INSTALL69bc4632138d/MASS/src' aarch64-mageia-linux-gnu-gcc -shared -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o MASS.so MASS.o lqs.o -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -lR make[3]: Leaving directory '/tmp/Rtmp5hl3FV/R.INSTALL69bc4632138d/MASS/src' installing to /home/iurt/rpmbuild/BUILD/R-3.6.3/library/MASS/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (MASS) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' begin installing recommended package cluster make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' begin installing recommended package class make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' * installing *source* package 'class' ... ** package 'class' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmphLXa4p/R.INSTALL74667a97678d/class/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c class.c -o class.o make[3]: Leaving directory '/tmp/RtmphLXa4p/R.INSTALL74667a97678d/class/src' make[3]: Entering directory '/tmp/RtmphLXa4p/R.INSTALL74667a97678d/class/src' aarch64-mageia-linux-gnu-gcc -shared -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o class.so class.o -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -lR make[3]: Leaving directory '/tmp/RtmphLXa4p/R.INSTALL74667a97678d/class/src' installing to /home/iurt/rpmbuild/BUILD/R-3.6.3/library/class/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (class) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' * installing *source* package 'lattice' ... ** package 'lattice' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpTJuPB2/R.INSTALL69a329369bd8/lattice/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/RtmpTJuPB2/R.INSTALL69a329369bd8/lattice/src' make[3]: Entering directory '/tmp/RtmpTJuPB2/R.INSTALL69a329369bd8/lattice/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c threeDplot.c -o threeDplot.o make[3]: Leaving directory '/tmp/RtmpTJuPB2/R.INSTALL69a329369bd8/lattice/src' make[3]: Entering directory '/tmp/RtmpTJuPB2/R.INSTALL69a329369bd8/lattice/src' aarch64-mageia-linux-gnu-gcc -shared -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o lattice.so init.o threeDplot.o -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -lR make[3]: Leaving directory '/tmp/RtmpTJuPB2/R.INSTALL69a329369bd8/lattice/src' installing to /home/iurt/rpmbuild/BUILD/R-3.6.3/library/lattice/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (lattice) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' begin installing recommended package Matrix make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' begin installing recommended package nlme make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' * installing *source* package 'cluster' ... ** package 'cluster' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dysta.f -o dysta.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' make[3]: Entering directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c daisy.f -o daisy.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' make[3]: Entering directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' make[3]: Entering directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sildist.c -o sildist.o make[3]: Leaving directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' make[3]: Entering directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mona.c -o mona.o make[3]: Leaving directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' make[3]: Entering directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c spannel.c -o spannel.o make[3]: Leaving directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' make[3]: Entering directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fanny.c -o fanny.o make[3]: Leaving directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' make[3]: Entering directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c twins.c -o twins.o make[3]: Leaving directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' make[3]: Entering directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c clara.c -o clara.o make[3]: Leaving directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' make[3]: Entering directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pam.c -o pam.o make[3]: Leaving directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' make[3]: Entering directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' aarch64-mageia-linux-gnu-gcc -shared -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -lgfortran -lm -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -lR make[3]: Leaving directory '/tmp/Rtmphpl64f/R.INSTALL7464cfe6b24/cluster/src' installing to /home/iurt/rpmbuild/BUILD/R-3.6.3/library/cluster/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (cluster) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' * installing *source* package 'nlme' ... ** package 'nlme' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chol.f -o chol.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' make[3]: Entering directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' make[3]: Entering directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c nlOptimizer.c -o nlOptimizer.o make[3]: Leaving directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' make[3]: Entering directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gnls.c -o gnls.o make[3]: Leaving directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' make[3]: Entering directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pythag.c -o pythag.o make[3]: Leaving directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' make[3]: Entering directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c matrix.c -o matrix.o make[3]: Leaving directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' make[3]: Entering directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pdMat.c -o pdMat.o make[3]: Leaving directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' make[3]: Entering directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c nlme.c -o nlme.o make[3]: Leaving directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' make[3]: Entering directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' aarch64-mageia-linux-gnu-gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rs.f -o rs.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' make[3]: Entering directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c corStruct.c -o corStruct.o make[3]: Leaving directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' make[3]: Entering directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c nlmefit.c -o nlmefit.o make[3]: Leaving directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' make[3]: Entering directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' aarch64-mageia-linux-gnu-gcc -shared -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -lgfortran -lm -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -lR make[3]: Leaving directory '/tmp/RtmpVWtjL5/R.INSTALL76245d067c6d/nlme/src' installing to /home/iurt/rpmbuild/BUILD/R-3.6.3/library/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nlme) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' * installing *source* package 'Matrix' ... ** package 'Matrix' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c CHMfactor.c -o CHMfactor.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Tsparse.c -o Tsparse.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c TMatrix_as.c -o TMatrix_as.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cs_utils.c -o cs_utils.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chm_common.c -o chm_common.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dense.c -o dense.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgTMatrix.c -o dgTMatrix.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgCMatrix.c -o dgCMatrix.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dpoMatrix.c -o dpoMatrix.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dppMatrix.c -o dppMatrix.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Mutils.c -o Mutils.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dsCMatrix.c -o dsCMatrix.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dspMatrix.c -o dspMatrix.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Csparse.c -o Csparse.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dsyMatrix.c -o dsyMatrix.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dtTMatrix.c -o dtTMatrix.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dtCMatrix.c -o dtCMatrix.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dtpMatrix.c -o dtpMatrix.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c factorizations.c -o factorizations.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ldense.c -o ldense.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgeMatrix.c -o dgeMatrix.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' ( cd Lib ; /usr/bin/make clean ) ( cd Source ; /usr/bin/make clean ) make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lgCMatrix.c -o lgCMatrix.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' ( cd Source ; /usr/bin/make clean ) ( cd Lib ; /usr/bin/make -f "/home/iurt/rpmbuild/BUILD/R-3.6.3/etc/Makeconf" -f Makefile ) make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dtrMatrix.c -o dtrMatrix.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c abIndex.c -o abIndex.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cs.c -o cs.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_aat.c -o cholmod_aat.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_add.c -o cholmod_add.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sparseQR.c -o sparseQR.o make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_common.c -o cholmod_common.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_band.c -o cholmod_band.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_error.c -o cholmod_error.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_complex.c -o cholmod_complex.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_copy.c -o cholmod_copy.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_memory.c -o cholmod_memory.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_version.c -o cholmod_version.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_factor.c -o cholmod_factor.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_sparse.c -o cholmod_sparse.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_dense.c -o cholmod_dense.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_triplet.c -o cholmod_triplet.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Check/cholmod_write.c -o cholmod_write.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Check/cholmod_read.c -o cholmod_read.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_transpose.c -o cholmod_transpose.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Check/cholmod_check.c -o cholmod_check.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_version.c -o cholmod_l_version.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Modify/cholmod_updown.c -o cholmod_updown.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/CHOLMOD/Lib' ( cd Source ; /usr/bin/make -f "/home/iurt/rpmbuild/BUILD/R-3.6.3/etc/Makeconf" -f Makefile lib ) make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/COLAMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c colamd_global.c -o colamd_global.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/COLAMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/COLAMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c colamd.c -o colamd_l.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/COLAMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/COLAMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c colamd.c -o colamd.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/COLAMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/COLAMD/Source' ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/COLAMD/Source' ( cd Source ; /usr/bin/make -f "/home/iurt/rpmbuild/BUILD/R-3.6.3/etc/Makeconf" -f Makefile lib ) make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_1.c -o amd_l_1.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_1.c -o amd_i_1.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_control.c -o amd_i_control.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_control.c -o amd_l_control.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_order.c -o amd_i_order.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_info.c -o amd_i_info.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_order.c -o amd_l_order.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_info.c -o amd_l_info.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_global.c -o amd_i_global.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_global.c -o amd_l_global.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_2.c -o amd_i_2.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_2.c -o amd_l_2.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o make[5]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/AMD/Source' make[4]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/SuiteSparse_config' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -DNTIMER -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c SuiteSparse_config.c -o SuiteSparse_config.o make[4]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/SuiteSparse_config' make[4]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/SuiteSparse_config' ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o make[4]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src/SuiteSparse_config' make[3]: Entering directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' aarch64-mageia-linux-gnu-gcc -shared -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -llapack -lblas -lgfortran -lm -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -lR make[3]: Leaving directory '/tmp/Rtmpd1qaMX/R.INSTALL762265219c8b/Matrix/src' installing to /home/iurt/rpmbuild/BUILD/R-3.6.3/library/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'chol2inv' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix' Creating a generic function for 'diag' from package 'base' in package 'Matrix' Creating a generic function for 'drop' from package 'base' in package 'Matrix' Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix' Creating a generic function for 'unname' from package 'base' in package 'Matrix' Creating a generic function for 'norm' from package 'base' in package 'Matrix' Creating a generic function for 'rcond' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'rcond' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc" Creating a generic function for 'colSums' from package 'base' in package 'Matrix' Creating a generic function for 'colMeans' from package 'base' in package 'Matrix' Creating a generic function for 'rowSums' from package 'base' in package 'Matrix' Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix' in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix' Creating a generic function for 'diag<-' from package 'base' in package 'Matrix' Creating a generic function for 'crossprod' from package 'base' in package 'Matrix' Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix' Creating a generic function for 'which' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM" in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph" in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph" in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL" Creating a generic function for 'qr.R' from package 'base' in package 'Matrix' Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix' Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix' Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix' Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix' Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Matrix) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' begin installing recommended package survival make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' begin installing recommended package mgcv make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' * installing *source* package 'survival' ... ** package 'survival' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agexact.c -o agexact.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agmart.c -o agmart.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agmart3.c -o agmart3.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agfit5.c -o agfit5.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agscore2.c -o agscore2.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agsurv4.c -o agsurv4.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agsurv5.c -o agsurv5.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chinv2.c -o chinv2.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agfit4.c -o agfit4.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cholesky2.c -o cholesky2.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chinv3.c -o chinv3.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agsurv3.c -o agsurv3.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chsolve2.c -o chsolve2.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cholesky5.c -o cholesky5.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cholesky3.c -o cholesky3.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chsolve3.c -o chsolve3.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chsolve5.c -o chsolve5.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cox_Rcallback.c -o cox_Rcallback.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxdetail.c -o coxdetail.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c concordance1.c -o concordance1.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxcount1.c -o coxcount1.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxmart.c -o coxmart.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c concordance3.c -o concordance3.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxmart2.c -o coxmart2.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxsafe.c -o coxsafe.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxexact.c -o coxexact.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxph_wtest.c -o coxph_wtest.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxfit6.c -o coxfit6.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxscho.c -o coxscho.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dmatrix.c -o dmatrix.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxscore2.c -o coxscore2.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gchol.c -o gchol.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c doloop.c -o doloop.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c finegray.c -o finegray.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c norisk.c -o norisk.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c multicheck.c -o multicheck.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pyears3b.c -o pyears3b.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxsurv2.c -o coxsurv2.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxsurv1.c -o coxsurv1.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pystep.c -o pystep.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxfit5.c -o coxfit5.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pyears2.c -o pyears2.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survfit4.c -o survfit4.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pyears1.c -o pyears1.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survConcordance.c -o survConcordance.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survdiff2.c -o survdiff2.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survpenal.c -o survpenal.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survregc2.c -o survregc2.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survsplit.c -o survsplit.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survfitci.c -o survfitci.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survregc1.c -o survregc1.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survreg6.c -o survreg6.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c tmerge.c -o tmerge.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survreg7.c -o survreg7.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c zph1.c -o zph1.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survfitkm.c -o survfitkm.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c zph2.c -o zph2.o make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' make[3]: Entering directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' aarch64-mageia-linux-gnu-gcc -shared -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart3.o agscore2.o agsurv3.o agsurv4.o agsurv5.o chinv2.o chinv3.o cholesky2.o cholesky3.o cholesky5.o chsolve2.o chsolve3.o chsolve5.o concordance1.o concordance3.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore2.o coxsurv1.o coxsurv2.o dmatrix.o doloop.o finegray.o gchol.o init.o multicheck.o norisk.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survfitkm.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o zph1.o zph2.o -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -lR make[3]: Leaving directory '/tmp/Rtmp9tRUPs/R.INSTALL547a10d145b8/survival/src' installing to /home/iurt/rpmbuild/BUILD/R-3.6.3/library/survival/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (survival) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' begin installing recommended package boot make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' * installing *source* package 'boot' ... ** package 'boot' successfully unpacked and MD5 sums checked ** using non-staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (boot) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' * installing *source* package 'mgcv' ... ** package 'mgcv' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' make[3]: Entering directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mgcv.c -o mgcv.o make[3]: Leaving directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' make[3]: Entering directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxph.c -o coxph.o make[3]: Leaving directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' make[3]: Entering directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c matrix.c -o matrix.o make[3]: Leaving directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' make[3]: Entering directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c misc.c -o misc.o make[3]: Leaving directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' make[3]: Entering directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mvn.c -o mvn.o make[3]: Leaving directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' make[3]: Entering directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c magic.c -o magic.o make[3]: Leaving directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' make[3]: Entering directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c soap.c -o soap.o make[3]: Leaving directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' make[3]: Entering directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qp.c -o qp.o make[3]: Leaving directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' make[3]: Entering directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c tprs.c -o tprs.o make[3]: Leaving directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' make[3]: Entering directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sparse-smooth.c -o sparse-smooth.o make[3]: Leaving directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' make[3]: Entering directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c discrete.c -o discrete.o make[3]: Leaving directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' make[3]: Entering directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mat.c -o mat.o make[3]: Leaving directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' make[3]: Entering directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' aarch64-mageia-linux-gnu-gcc -I"/home/iurt/rpmbuild/BUILD/R-3.6.3/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gdi.c -o gdi.o make[3]: Leaving directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' make[3]: Entering directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' aarch64-mageia-linux-gnu-gcc -shared -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o mgcv.so coxph.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o tprs.o -llapack -lblas -lgfortran -lm -L/home/iurt/rpmbuild/BUILD/R-3.6.3/lib -lR make[3]: Leaving directory '/tmp/RtmpNjBEiI/R.INSTALL547d476f2646/mgcv/src' installing to /home/iurt/rpmbuild/BUILD/R-3.6.3/library/mgcv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (mgcv) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library/Recommended' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library' building/updating vignettes for package 'grid' ... building/updating vignettes for package 'parallel' ... building/updating vignettes for package 'utils' ... make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library' + pushd src/nmath/standalone ~/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone ~/rpmbuild/BUILD/R-3.6.3 + /usr/bin/make -O -j8 V=1 VERBOSE=1 (cd ../../include; /usr/bin/make Rmath.h) make[1]: 'Rmath.h' is up to date. Copying source files make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making mlutils.d from mlutils.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making i1mach.d from i1mach.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making fmax2.d from fmax2.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making d1mach.d from d1mach.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making fprec.d from fprec.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making fmin2.d from fmin2.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making ftrunc.d from ftrunc.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making fsign.d from fsign.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making imax2.d from imax2.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making fround.d from fround.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making sign.d from sign.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making chebyshev.d from chebyshev.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making lgammacor.d from lgammacor.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making imin2.d from imin2.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making log1p.d from log1p.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making gammalims.d from gammalims.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making stirlerr.d from stirlerr.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making bd0.d from bd0.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making gamma.d from gamma.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making lgamma.d from lgamma.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making beta.d from beta.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making lbeta.d from lbeta.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making gamma_cody.d from gamma_cody.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making cospi.d from cospi.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making bessel_i.d from bessel_i.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making bessel_j.d from bessel_j.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making polygamma.d from polygamma.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making bessel_k.d from bessel_k.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making bessel_y.d from bessel_y.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making snorm.d from snorm.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making choose.d from choose.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making sexp.d from sexp.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dgamma.d from dgamma.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making rgamma.d from rgamma.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qgamma.d from qgamma.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making pgamma.d from pgamma.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dbeta.d from dbeta.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making pbeta.d from pbeta.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qbeta.d from qbeta.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making rbeta.d from rbeta.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dunif.d from dunif.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making punif.d from punif.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making runif.d from runif.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qunif.d from qunif.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dnorm.d from dnorm.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making pnorm.d from pnorm.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making rnorm.d from rnorm.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dlnorm.d from dlnorm.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qlnorm.d from qlnorm.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qnorm.d from qnorm.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making rlnorm.d from rlnorm.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making plnorm.d from plnorm.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making df.d from df.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qf.d from qf.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making pf.d from pf.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making rf.d from rf.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dt.d from dt.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dnf.d from dnf.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making pt.d from pt.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qt.d from qt.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making rt.d from rt.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dnt.d from dnt.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dchisq.d from dchisq.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making pchisq.d from pchisq.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qchisq.d from qchisq.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making rchisq.d from rchisq.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making rnchisq.d from rnchisq.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dbinom.d from dbinom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making pbinom.d from pbinom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qbinom.d from qbinom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making rbinom.d from rbinom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dcauchy.d from dcauchy.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making rmultinom.d from rmultinom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making pcauchy.d from pcauchy.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qcauchy.d from qcauchy.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making rcauchy.d from rcauchy.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making pexp.d from pexp.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qexp.d from qexp.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dexp.d from dexp.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making rexp.d from rexp.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dgeom.d from dgeom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making pgeom.d from pgeom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qgeom.d from qgeom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making phyper.d from phyper.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qhyper.d from qhyper.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dhyper.d from dhyper.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making rgeom.d from rgeom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making rhyper.d from rhyper.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dnbinom.d from dnbinom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qnbinom.d from qnbinom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making pnbinom.d from pnbinom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making rnbinom.d from rnbinom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making ppois.d from ppois.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qpois.d from qpois.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dpois.d from dpois.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making rpois.d from rpois.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making pweibull.d from pweibull.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dweibull.d from dweibull.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qweibull.d from qweibull.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making rweibull.d from rweibull.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dlogis.d from dlogis.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making plogis.d from plogis.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making rlogis.d from rlogis.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dnchisq.d from dnchisq.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qlogis.d from qlogis.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making pnchisq.d from pnchisq.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qnchisq.d from qnchisq.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making dnbeta.d from dnbeta.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making pnbeta.d from pnbeta.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qnbeta.d from qnbeta.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making pnf.d from pnf.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making pnt.d from pnt.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qnf.d from qnf.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qnt.d from qnt.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making ptukey.d from ptukey.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making qtukey.d from qtukey.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making toms708.d from toms708.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making wilcox.d from wilcox.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making std_unif.d from std_unif.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' making signrank.d from signrank.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c d1mach.c -o d1mach.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c i1mach.c -o i1mach.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fmax2.c -o fmax2.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c i1mach.c -o i1mach.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mlutils.c -o mlutils.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fmax2.c -o fmax2.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fmin2.c -o fmin2.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c d1mach.c -o d1mach.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fmin2.c -o fmin2.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fround.c -o fround.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fprec.c -o fprec.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mlutils.c -o mlutils.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fround.c -o fround.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ftrunc.c -o ftrunc.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sign.c -o sign.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fprec.c -o fprec.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c imax2.c -o imax2.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fsign.c -o fsign.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ftrunc.c -o ftrunc.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sign.c -o sign.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c imin2.c -o imin2.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chebyshev.c -o chebyshev.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c imax2.c -o imax2.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fsign.c -o fsign.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c log1p.c -o log1p.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lgammacor.c -o lgammacor.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c imin2.c -o imin2.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chebyshev.c -o chebyshev.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gammalims.c -o gammalims.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c stirlerr.c -o stirlerr.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c log1p.c -o log1p.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bd0.c -o bd0.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lgammacor.c -o lgammacor.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gamma_cody.c -o gamma_cody.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c beta.c -o beta.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gammalims.c -o gammalims.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lgamma.c -o lgamma.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lbeta.c -o lbeta.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bd0.c -o bd0.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gamma.c -o gamma.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c stirlerr.c -o stirlerr.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cospi.c -o cospi.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gamma.c -o gamma.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lgamma.c -o lgamma.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gamma_cody.c -o gamma_cody.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_i.c -o bessel_i.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_j.c -o bessel_j.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_y.c -o bessel_y.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c polygamma.c -o polygamma.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c beta.c -o beta.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lbeta.c -o lbeta.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_k.c -o bessel_k.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgamma.c -o dgamma.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c choose.c -o choose.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sexp.c -o sexp.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c polygamma.c -o polygamma.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c snorm.c -o snorm.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cospi.c -o cospi.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dbeta.c -o dbeta.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_i.c -o bessel_i.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pbeta.c -o pbeta.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rgamma.c -o rgamma.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qgamma.c -o qgamma.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_j.c -o bessel_j.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dunif.c -o dunif.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pgamma.c -o pgamma.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_y.c -o bessel_y.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c choose.c -o choose.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c punif.c -o punif.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rbeta.c -o rbeta.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_k.c -o bessel_k.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sexp.c -o sexp.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c runif.c -o runif.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgamma.c -o dgamma.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qunif.c -o qunif.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnorm.c -o dnorm.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c snorm.c -o snorm.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnorm.c -o qnorm.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rnorm.c -o rnorm.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnorm.c -o pnorm.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qgamma.c -o qgamma.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dlnorm.c -o dlnorm.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qbeta.c -o qbeta.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pgamma.c -o pgamma.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rgamma.c -o rgamma.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plnorm.c -o plnorm.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pf.c -o pf.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qlnorm.c -o qlnorm.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rlnorm.c -o rlnorm.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dbeta.c -o dbeta.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pbeta.c -o pbeta.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rf.c -o rf.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnf.c -o dnf.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qf.c -o qf.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c df.c -o df.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dt.c -o dt.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dunif.c -o dunif.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rbeta.c -o rbeta.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pt.c -o pt.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rt.c -o rt.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pchisq.c -o pchisq.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c punif.c -o punif.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnt.c -o dnt.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qt.c -o qt.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dchisq.c -o dchisq.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qunif.c -o qunif.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qbeta.c -o qbeta.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qchisq.c -o qchisq.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rchisq.c -o rchisq.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rnchisq.c -o rnchisq.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dbinom.c -o dbinom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pbinom.c -o pbinom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnorm.c -o dnorm.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c runif.c -o runif.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dcauchy.c -o dcauchy.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qbinom.c -o qbinom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rmultinom.c -o rmultinom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rcauchy.c -o rcauchy.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rbinom.c -o rbinom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnorm.c -o pnorm.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnorm.c -o qnorm.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pcauchy.c -o pcauchy.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qcauchy.c -o qcauchy.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dexp.c -o dexp.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pexp.c -o pexp.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rnorm.c -o rnorm.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plnorm.c -o plnorm.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rlnorm.c -o rlnorm.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dlnorm.c -o dlnorm.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qexp.c -o qexp.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rexp.c -o rexp.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qlnorm.c -o qlnorm.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c df.c -o df.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgeom.c -o dgeom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qf.c -o qf.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pf.c -o pf.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rf.c -o rf.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qgeom.c -o qgeom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnf.c -o dnf.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dt.c -o dt.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dhyper.c -o dhyper.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pgeom.c -o pgeom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnt.c -o dnt.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pt.c -o pt.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rgeom.c -o rgeom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rt.c -o rt.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qchisq.c -o qchisq.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qt.c -o qt.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pchisq.c -o pchisq.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dchisq.c -o dchisq.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rnchisq.c -o rnchisq.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c phyper.c -o phyper.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dbinom.c -o dbinom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qhyper.c -o qhyper.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pbinom.c -o pbinom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rchisq.c -o rchisq.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rhyper.c -o rhyper.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dcauchy.c -o dcauchy.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qbinom.c -o qbinom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rbinom.c -o rbinom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rmultinom.c -o rmultinom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnbinom.c -o pnbinom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pcauchy.c -o pcauchy.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qcauchy.c -o qcauchy.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnbinom.c -o dnbinom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rcauchy.c -o rcauchy.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnbinom.c -o qnbinom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dexp.c -o dexp.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rnbinom.c -o rnbinom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ppois.c -o ppois.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pexp.c -o pexp.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rexp.c -o rexp.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dpois.c -o dpois.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qpois.c -o qpois.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rpois.c -o rpois.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dweibull.c -o dweibull.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgeom.c -o dgeom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qexp.c -o qexp.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pgeom.c -o pgeom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qweibull.c -o qweibull.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pweibull.c -o pweibull.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qgeom.c -o qgeom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rweibull.c -o rweibull.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rgeom.c -o rgeom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dhyper.c -o dhyper.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c phyper.c -o phyper.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plogis.c -o plogis.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dlogis.c -o dlogis.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qlogis.c -o qlogis.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnbinom.c -o dnbinom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnbinom.c -o pnbinom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qhyper.c -o qhyper.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rlogis.c -o rlogis.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnchisq.c -o qnchisq.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rhyper.c -o rhyper.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnchisq.c -o dnchisq.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnbinom.c -o qnbinom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnchisq.c -o pnchisq.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rnbinom.c -o rnbinom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnbeta.c -o pnbeta.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dpois.c -o dpois.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnbeta.c -o dnbeta.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ppois.c -o ppois.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnbeta.c -o qnbeta.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnf.c -o qnf.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnf.c -o pnf.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dweibull.c -o dweibull.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pweibull.c -o pweibull.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rpois.c -o rpois.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qpois.c -o qpois.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rweibull.c -o rweibull.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qweibull.c -o qweibull.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dlogis.c -o dlogis.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnt.c -o qnt.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnt.c -o pnt.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rlogis.c -o rlogis.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qlogis.c -o qlogis.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plogis.c -o plogis.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnchisq.c -o dnchisq.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qtukey.c -o qtukey.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ptukey.c -o ptukey.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnchisq.c -o qnchisq.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnbeta.c -o qnbeta.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnchisq.c -o pnchisq.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnbeta.c -o dnbeta.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnbeta.c -o pnbeta.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnf.c -o pnf.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c std_unif.c -o std_unif.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c wilcox.c -o wilcox.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c signrank.c -o signrank.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnf.c -o qnf.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnt.c -o qnt.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnt.c -o pnt.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ptukey.c -o ptukey.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c std_unif.c -o std_unif.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qtukey.c -o qtukey.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c wilcox.c -o wilcox.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c signrank.c -o signrank.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c toms708.c -o toms708.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -shared -pthread -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o libRmath.so mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' aarch64-mageia-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c toms708.c -o toms708.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o aarch64-mageia-linux-gnu-ranlib libRmath.a make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone' + popd ~/rpmbuild/BUILD/R-3.6.3 + /usr/bin/make -O -j8 V=1 VERBOSE=1 pdf make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' creating doc/manual/version.tex make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering 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Converting parsed Rd's to LaTeX make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' collecting LaTeX docs for package 'Matrix' ... Converting parsed Rd's to LaTeX ........... make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' collecting LaTeX docs for package 'cluster' ... Converting parsed Rd's to LaTeX ..... make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' collecting LaTeX docs for package 'rpart' ... Converting parsed Rd's to LaTeX .. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' collecting LaTeX docs for package 'spatial' ... Converting parsed Rd's to LaTeX .. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' collecting LaTeX docs for package 'stats' ... Converting parsed Rd's to LaTeX .............................. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' collecting LaTeX docs for package 'nlme' ... Converting parsed Rd's to LaTeX ............................ make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' collecting LaTeX docs for package 'base' ... Converting parsed Rd's to LaTeX ........................................... make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi @setfilename R-data.info This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Underfull \hbox (badness 10000) in paragraph at lines 87--87 [][]@textbf DBI Overfull \hbox (4.50087pt too wide) in paragraph at lines 87--87 @texttt package=DBI[]@textrm )[][]| Overfull \hbox (8.53186pt too wide) in paragraph at lines 88--88 [][]@textbf dataframes2xls Overfull \hbox (67.73643pt too wide) in paragraph at lines 88--88 @texttt package=dataframes2xls[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 89--89 [][]@textbf foreign Overfull \hbox (27.49562pt too wide) in paragraph at lines 89--89 @texttt package=foreign[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 90--90 [][]@textbf gdata Overfull \hbox (15.99825pt too wide) in paragraph at lines 90--90 @texttt package=gdata[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 91--91 [][]@textbf ncdf4 Overfull \hbox (15.99825pt too wide) in paragraph at lines 91--91 @texttt package=ncdf4[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 92--92 [][]@textbf rJava Overfull \hbox (15.99825pt too wide) in paragraph at lines 92--92 @texttt package=rJava[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 93--93 [][]@textbf RJDBC Overfull \hbox (15.99825pt too wide) in paragraph at lines 93--93 @texttt package=RJDBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 94--94 [][]@textbf RMySQL Overfull \hbox (21.74693pt too wide) in paragraph at lines 94--94 @texttt package=RMySQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 95--95 [][]@textbf RNetCDF Overfull \hbox (27.49562pt too wide) in paragraph at lines 95--95 @texttt package=RNetCDF[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 96--96 [][]@textbf RODBC Overfull \hbox (15.99825pt too wide) in paragraph at lines 96--96 @texttt package=RODBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 97--97 [][]@textbf ROracle Overfull \hbox (27.49562pt too wide) in paragraph at lines 97--97 @texttt package=ROracle[]@textrm )[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 98--98 [][]@textbf RPostgreSQL Overfull \hbox (50.49037pt too wide) in paragraph at lines 98--98 @texttt package=RPostgreSQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 101--101 [][]@textbf RSQLite Overfull \hbox (27.49562pt too wide) in paragraph at lines 101--101 @texttt package=RSQLite[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 103--103 [][]@textbf WriteXLS Overfull \hbox (33.24431pt too wide) in paragraph at lines 103--103 @texttt package=WriteXLS[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 104--104 [][]@textbf XLConnect Overfull \hbox (38.993pt too wide) in paragraph at lines 104--104 @texttt package=XLConnect[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 105--105 [][]@textbf XML Overfull \hbox (4.50087pt too wide) in paragraph at lines 105--105 @texttt package=XML[]@textrm )[][]| [1] [2] Chapter 1 [3] Writing index file R-data.cp Cross reference values unknown; you must run TeX again. [4] [5] [6] Chapter 2 [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] Chapter 4 [15] [16] [17] [18] [19] [20] Chapter 5 [21] Chapter 6 [22] Chapter 7 [23] [24] [25] [26] Chapter 8 [27] Chapter 9 [28] Appendix A [29] (Function and variable index) [30] No file R-data.vrs. (Concept index) [31] No file R-data.cps. [32] ) (see the transcript file for additional information) Output written on R-data.pdf (35 pages, 270172 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-data.toc [-1]) [-2] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-data.toc) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-data.toc) (Acknowledgements) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-data.aux) Underfull \hbox (badness 10000) in paragraph at lines 87--87 [][]@textbf DBI Overfull \hbox (4.50087pt too wide) in paragraph at lines 87--87 @texttt package=DBI[]@textrm )[][]| Overfull \hbox (8.53186pt too wide) in paragraph at lines 88--88 [][]@textbf dataframes2xls Overfull \hbox (67.73643pt too wide) in paragraph at lines 88--88 @texttt package=dataframes2xls[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 89--89 [][]@textbf foreign Overfull \hbox (27.49562pt too wide) in paragraph at lines 89--89 @texttt package=foreign[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 90--90 [][]@textbf gdata Overfull \hbox (15.99825pt too wide) in paragraph at lines 90--90 @texttt package=gdata[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 91--91 [][]@textbf ncdf4 Overfull \hbox (15.99825pt too wide) in paragraph at lines 91--91 @texttt package=ncdf4[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 92--92 [][]@textbf rJava Overfull \hbox (15.99825pt too wide) in paragraph at lines 92--92 @texttt package=rJava[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 93--93 [][]@textbf RJDBC Overfull \hbox (15.99825pt too wide) in paragraph at lines 93--93 @texttt package=RJDBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 94--94 [][]@textbf RMySQL Overfull \hbox (21.74693pt too wide) in paragraph at lines 94--94 @texttt package=RMySQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 95--95 [][]@textbf RNetCDF Overfull \hbox (27.49562pt too wide) in paragraph at lines 95--95 @texttt package=RNetCDF[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 96--96 [][]@textbf RODBC Overfull \hbox (15.99825pt too wide) in paragraph at lines 96--96 @texttt package=RODBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 97--97 [][]@textbf ROracle Overfull \hbox (27.49562pt too wide) in paragraph at lines 97--97 @texttt package=ROracle[]@textrm )[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 98--98 [][]@textbf RPostgreSQL Overfull \hbox (50.49037pt too wide) in paragraph at lines 98--98 @texttt package=RPostgreSQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 101--101 [][]@textbf RSQLite Overfull \hbox (27.49562pt too wide) in paragraph at lines 101--101 @texttt package=RSQLite[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 103--103 [][]@textbf WriteXLS Overfull \hbox (33.24431pt too wide) in paragraph at lines 103--103 @texttt package=WriteXLS[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 104--104 [][]@textbf XLConnect Overfull \hbox (38.993pt too wide) in paragraph at lines 104--104 @texttt package=XLConnect[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 105--105 [][]@textbf XML Overfull \hbox (4.50087pt too wide) in paragraph at lines 105--105 @texttt package=XML[]@textrm )[][]| [1] [2] Chapter 1 [3] Writing index file R-data.cp [4] [5] [6] Chapter 2 [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] Chapter 4 [15] [16] [17] [18] [19] [20] Chapter 5 [21] Chapter 6 [22] Chapter 7 [23] [24] [25] [26] Chapter 8 [27] Chapter 9 [28] Appendix A [29] (Function and variable index) [30] [31] (Concept index) [32] [33] ) (see the transcript file for additional information) Output written on R-data.pdf (37 pages, 309696 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-data.toc [-1]) [-2] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-data.toc) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-data.toc) (Acknowledgements) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-data.aux) Underfull \hbox (badness 10000) in paragraph at lines 87--87 [][]@textbf DBI Overfull \hbox (4.50087pt too wide) in paragraph at lines 87--87 @texttt package=DBI[]@textrm )[][]| Overfull \hbox (8.53186pt too wide) in paragraph at lines 88--88 [][]@textbf dataframes2xls Overfull \hbox (67.73643pt too wide) in paragraph at lines 88--88 @texttt package=dataframes2xls[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 89--89 [][]@textbf foreign Overfull \hbox (27.49562pt too wide) in paragraph at lines 89--89 @texttt package=foreign[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 90--90 [][]@textbf gdata Overfull \hbox (15.99825pt too wide) in paragraph at lines 90--90 @texttt package=gdata[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 91--91 [][]@textbf ncdf4 Overfull \hbox (15.99825pt too wide) in paragraph at lines 91--91 @texttt package=ncdf4[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 92--92 [][]@textbf rJava Overfull \hbox (15.99825pt too wide) in paragraph at lines 92--92 @texttt package=rJava[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 93--93 [][]@textbf RJDBC Overfull \hbox (15.99825pt too wide) in paragraph at lines 93--93 @texttt package=RJDBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 94--94 [][]@textbf RMySQL Overfull \hbox (21.74693pt too wide) in paragraph at lines 94--94 @texttt package=RMySQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 95--95 [][]@textbf RNetCDF Overfull \hbox (27.49562pt too wide) in paragraph at lines 95--95 @texttt package=RNetCDF[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 96--96 [][]@textbf RODBC Overfull \hbox (15.99825pt too wide) in paragraph at lines 96--96 @texttt package=RODBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 97--97 [][]@textbf ROracle Overfull \hbox (27.49562pt too wide) in paragraph at lines 97--97 @texttt package=ROracle[]@textrm )[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 98--98 [][]@textbf RPostgreSQL Overfull \hbox (50.49037pt too wide) in paragraph at lines 98--98 @texttt package=RPostgreSQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 101--101 [][]@textbf RSQLite Overfull \hbox (27.49562pt too wide) in paragraph at lines 101--101 @texttt package=RSQLite[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 103--103 [][]@textbf WriteXLS Overfull \hbox (33.24431pt too wide) in paragraph at lines 103--103 @texttt package=WriteXLS[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 104--104 [][]@textbf XLConnect Overfull \hbox (38.993pt too wide) in paragraph at lines 104--104 @texttt package=XLConnect[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 105--105 [][]@textbf XML Overfull \hbox (4.50087pt too wide) in paragraph at lines 105--105 @texttt package=XML[]@textrm )[][]| [1] [2] Chapter 1 [3] Writing index file R-data.cp [4] [5] [6] Chapter 2 [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] Chapter 4 [15] [16] [17] [18] [19] [20] Chapter 5 [21] Chapter 6 [22] Chapter 7 [23] [24] [25] [26] Chapter 8 [27] Chapter 9 [28] Appendix A [29] (Function and variable index) [30] [31] (Concept index) [32] [33] ) (see the transcript file for additional information) Output written on R-data.pdf (37 pages, 309694 bytes). Transcript written on R-data.log. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-FAQ.texi @setfilename R-FAQ.info This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf-dist/tex/texinfo/txi-en.tex) [1{/usr/share/texmf-dist/fonts/m ap/pdftex/updmap/pdftex.map}] [-1] Chapter 1 Cross reference values unknown; you must run TeX again. [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] Writing index file R-FAQ.fn [39] [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 3271--3279 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (50 pages, 358694 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf-dist/tex/texinfo/txi-en.tex) [1{/usr/share/texmf-dist/fonts/m ap/pdftex/updmap/pdftex.map}] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-FAQ.toc) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-FAQ.toc) Chapter 1 (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-FAQ.aux) [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] Writing index file R-FAQ.fn [39] [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 3271--3279 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (52 pages, 375275 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf-dist/tex/texinfo/txi-en.tex) [1{/usr/share/texmf-dist/fonts/m ap/pdftex/updmap/pdftex.map}] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-FAQ.toc) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-FAQ.toc) Chapter 1 (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-FAQ.aux) [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] Writing index file R-FAQ.fn [39] [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 3271--3279 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (52 pages, 375276 bytes). Transcript written on R-FAQ.log. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi @setfilename R-admin.info This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] Cross reference values unknown; you must run TeX again. [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] Underfull \hbox (badness 7685) in paragraph at lines 1368--1372 []@textrm or per-haps bet-ter, set the en-vi-ron-ment vari-able @texttt TAR_OP TIONS[] @textrm to the value [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1585--1589 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make [17] [18] Chapter 4 [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 1963--1975 @texttt capitan.fw.pkg[]@textrm , @texttt org.r-project.R.el-capitan.GUI.pkg[]@ textrm , @texttt org.r-project.x86_ [21] Chapter 5 [22] Chapter 6 [23] [24] [25] [26] [27] [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] Chapter 9 [36] [37] Appendix A [38] [39] [40] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3437--3437 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [41] [42] [43] [44] [45] [46] [47] [48] [49] Appendix B [50] [51] [52] [53] [54] Appendix C [55] [56] [57] [58] [59] [60] [61] Overfull \hbox (14.99889pt too wide) in paragraph at lines 5171--5171 []@texttt curl -OL https://mac.r-project.org/libs/pcre-8.40-darwin.15-x86_64.t ar.gz[] Overfull \hbox (106.97789pt too wide) in paragraph at lines 5216--5216 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [62] Overfull \hbox (45.05586pt too wide) in paragraph at lines 5248--5248 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 5317--5317 []@texttt /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_m acOS_10.14.pkg \[] Overfull \hbox (114.04012pt too wide) in paragraph at lines 5326--5326 []@texttt CC="/usr/local/clang7/bin/clang -isysroot /Library/Developer/Command LineTools/SDKs/MacOSX.sdk"[] Overfull \hbox (131.28618pt too wide) in paragraph at lines 5327--5327 []@texttt CXX="/usr/local/clang7/bin/clang++ -isysroot /Library/Developer/Comm andLineTools/SDKs/MacOSX.sdk"[] [63] [64] [65] [66] [67] Overfull \hbox (119.7888pt too wide) in paragraph at lines 5763--5763 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc onfig:/usr/lib/64/pkgconfig[] [68] [69] Appendix D [70] [71] [72] (Function and variable index) [73] No file R-admin.vrs. (Concept index) [74] No file R-admin.cps. (Environment variable index) [75] No file R-admin.ens. [76] ) (see the transcript file for additional information) Output written on R-admin.pdf (79 pages, 478128 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-admin.toc [-1] [-2]) [-3] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-admin.toc) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-admin.toc) Chapter 1 (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] Underfull \hbox (badness 7685) in paragraph at lines 1368--1372 []@textrm or per-haps bet-ter, set the en-vi-ron-ment vari-able @texttt TAR_OP TIONS[] @textrm to the value [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1585--1589 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make [17] [18] Chapter 4 [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 1963--1975 @texttt capitan.fw.pkg[]@textrm , @texttt org.r-project.R.el-capitan.GUI.pkg[]@ textrm , @texttt org.r-project.x86_ [21] Chapter 5 [22] Chapter 6 [23] [24] [25] [26] [27] [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] Chapter 9 [36] [37] Appendix A [38] [39] [40] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3437--3437 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [41] [42] [43] [44] [45] [46] [47] [48] [49] Appendix B [50] [51] [52] [53] [54] Appendix C [55] [56] [57] [58] [59] [60] [61] Overfull \hbox (14.99889pt too wide) in paragraph at lines 5171--5171 []@texttt curl -OL https://mac.r-project.org/libs/pcre-8.40-darwin.15-x86_64.t ar.gz[] Overfull \hbox (106.97789pt too wide) in paragraph at lines 5216--5216 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [62] Overfull \hbox (45.05586pt too wide) in paragraph at lines 5248--5248 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 5317--5317 []@texttt /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_m acOS_10.14.pkg \[] Overfull \hbox (114.04012pt too wide) in paragraph at lines 5326--5326 []@texttt CC="/usr/local/clang7/bin/clang -isysroot /Library/Developer/Command LineTools/SDKs/MacOSX.sdk"[] Overfull \hbox (131.28618pt too wide) in paragraph at lines 5327--5327 []@texttt CXX="/usr/local/clang7/bin/clang++ -isysroot /Library/Developer/Comm andLineTools/SDKs/MacOSX.sdk"[] [63] [64] [65] [66] [67] Overfull \hbox (119.7888pt too wide) in paragraph at lines 5763--5763 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc onfig:/usr/lib/64/pkgconfig[] [68] [69] Appendix D [70] [71] [72] (Function and variable index) [73] (Concept index) [74] (Environment variable index) [75] [76] ) (see the transcript file for additional information)< /usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb> Output written on R-admin.pdf (81 pages, 524156 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-admin.toc [-1] [-2]) [-3] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-admin.toc) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-admin.toc) Chapter 1 (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] Underfull \hbox (badness 7685) in paragraph at lines 1368--1372 []@textrm or per-haps bet-ter, set the en-vi-ron-ment vari-able @texttt TAR_OP TIONS[] @textrm to the value [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1585--1589 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make [17] [18] Chapter 4 [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 1963--1975 @texttt capitan.fw.pkg[]@textrm , @texttt org.r-project.R.el-capitan.GUI.pkg[]@ textrm , @texttt org.r-project.x86_ [21] Chapter 5 [22] Chapter 6 [23] [24] [25] [26] [27] [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] Chapter 9 [36] [37] Appendix A [38] [39] [40] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3437--3437 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [41] [42] [43] [44] [45] [46] [47] [48] [49] Appendix B [50] [51] [52] [53] [54] Appendix C [55] [56] [57] [58] [59] [60] [61] Overfull \hbox (14.99889pt too wide) in paragraph at lines 5171--5171 []@texttt curl -OL https://mac.r-project.org/libs/pcre-8.40-darwin.15-x86_64.t ar.gz[] Overfull \hbox (106.97789pt too wide) in paragraph at lines 5216--5216 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [62] Overfull \hbox (45.05586pt too wide) in paragraph at lines 5248--5248 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 5317--5317 []@texttt /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_m acOS_10.14.pkg \[] Overfull \hbox (114.04012pt too wide) in paragraph at lines 5326--5326 []@texttt CC="/usr/local/clang7/bin/clang -isysroot /Library/Developer/Command LineTools/SDKs/MacOSX.sdk"[] Overfull \hbox (131.28618pt too wide) in paragraph at lines 5327--5327 []@texttt CXX="/usr/local/clang7/bin/clang++ -isysroot /Library/Developer/Comm andLineTools/SDKs/MacOSX.sdk"[] [63] [64] [65] [66] [67] Overfull \hbox (119.7888pt too wide) in paragraph at lines 5763--5763 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc onfig:/usr/lib/64/pkgconfig[] [68] [69] Appendix D [70] [71] [72] (Function and variable index) [73] (Concept index) [74] (Environment variable index) [75] [76] ) (see the transcript file for additional information)< /usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb> Output written on R-admin.pdf (81 pages, 524156 bytes). Transcript written on R-admin.log. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' collecting LaTeX docs for package 'mgcv' ... Converting parsed Rd's to LaTeX .............. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi @setfilename R-ints.info This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1455--1455 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1456--1456 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1457--1457 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1458--1458 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [16] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Chapter 7 [43] Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [44] Chapter 8 [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 3852--3857 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [47] [48] [49] [50] [51] [52] Underfull \hbox (badness 7326) in paragraph at lines 4257--4263 []@textrm Optionally check if ei-ther ar-gu-ment of the bi-nary op-er-a-tors @ texttt &&[] @textrm and [53] [54] Chapter 9 [55] [56] Chapter 10 [57] Chapter 11 [58] Chapter 12 [59] [60] (Function and variable index) [61] No file R-ints.vrs. (Concept index) [62] No file R-ints.cps. [63] ) (see the transcript file for additional information)< /usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb> Output written on R-ints.pdf (66 pages, 398658 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-ints.toc [-1]) [-2] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-ints.toc) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-ints.toc) Chapter 1 (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1455--1455 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1456--1456 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1457--1457 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1458--1458 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [16] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Chapter 7 [43] Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [44] Chapter 8 [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 3852--3857 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [47] [48] [49] [50] [51] [52] Underfull \hbox (badness 7326) in paragraph at lines 4257--4263 []@textrm Optionally check if ei-ther ar-gu-ment of the bi-nary op-er-a-tors @ texttt &&[] @textrm and [53] [54] Chapter 9 [55] [56] Chapter 10 [57] Chapter 11 [58] Chapter 12 [59] [60] (Function and variable index) [61] [62] (Concept index) [63] [64] ) (see the transcript file for additional information) Output written on R-ints.pdf (68 pages, 449074 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-ints.toc [-1]) [-2] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-ints.toc) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-ints.toc) Chapter 1 Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1455--1455 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1456--1456 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1457--1457 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1458--1458 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [16] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Chapter 7 [43] Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [44] Chapter 8 [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 3852--3857 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [47] [48] [49] [50] [51] [52] Underfull \hbox (badness 7326) in paragraph at lines 4257--4263 []@textrm Optionally check if ei-ther ar-gu-ment of the bi-nary op-er-a-tors @ texttt &&[] @textrm and [53] [54] Chapter 9 [55] [56] Chapter 10 [57] Chapter 11 [58] Chapter 12 [59] [60] (Function and variable index) [61] [62] (Concept index) [63] [64] ) (see the transcript file for additional information) Output written on R-ints.pdf (68 pages, 449074 bytes). Transcript written on R-ints.log. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi @setfilename R-lang.info This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-lang.cp Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again. Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4342--4344 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] No file R-lang.vrs. (Concept Index) [52] No file R-lang.cps. Appendix A [53] [54] ) (see the transcript file for additional information) Output written on R-lang.pdf (57 pages, 326412 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-lang.toc [-1] [-2]) [-3] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-lang.toc) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-lang.toc) Chapter 1 (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4342--4344 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] [52] (Concept Index) [53] Appendix A [54] [55] ) (see the transcript file for additional information) Output written on R-lang.pdf (60 pages, 374808 bytes). Transcript written on R-lang.log. tar: R-lang.aux: Cannot stat: No such file or directory tar: Exiting with failure status due to previous errors This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-lang.toc [-1] [-2]) [-3] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-lang.toc) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-lang.toc) Chapter 1 Writing index file R-lang.cp Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again. Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4342--4344 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] [52] (Concept Index) [53] Appendix A [54] [55] ) (see the transcript file for additional information) Output written on R-lang.pdf (60 pages, 383489 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-lang.toc [-1] [-2]) [-3] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-lang.toc) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-lang.toc) Chapter 1 (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4342--4344 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] [52] (Concept Index) [53] Appendix A [54] [55] ) (see the transcript file for additional information) Output written on R-lang.pdf (60 pages, 374820 bytes). Transcript written on R-lang.log. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi @setfilename R-intro.info This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface) Cross reference values unknown; you must run TeX again. Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6647--6652 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6647--6652 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] No file R-intro.vrs. Appendix E [94] No file R-intro.cps. Appendix F [95] [96] ) (see the transcript file for additional information) Output written on R-intro.pdf (99 pages, 571447 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-intro.toc) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-intro.toc) (Preface) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6647--6652 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6647--6652 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] [94] [95] Appendix E [96] [97] Appendix F [98] [99] ) (see the transcript file for additional information)< /usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb> Output written on R-intro.pdf (105 pages, 621003 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-intro.toc) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-intro.toc) (Preface) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6647--6652 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6647--6652 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] [94] [95] Appendix E [96] [97] Appendix F [98] [99] ) (see the transcript file for additional information)< /usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb> Output written on R-intro.pdf (105 pages, 621012 bytes). Transcript written on R-intro.log. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi @setfilename R-exts.info This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-exts.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 493--496 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2391--2391 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2393--2393 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [28] [29] [30] [31] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2764--2764 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4795--4795 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4797--4797 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4798--4798 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4813--4813 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [55] [56] [57] [58] [59] [60] [61] [62] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5452--5452 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [63] [64] [65] [66] [67] [68] Chapter 2 [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] Underfull \hbox (badness 10000) in paragraph at lines 7023--7030 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7202--7208 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [83] [84] [85] [86] Chapter 3 [87] [88] [89] [90] [91] [92] [93] [94] Chapter 4 [95] [96] [97] [98] [99] Underfull \hbox (badness 10000) in paragraph at lines 8498--8507 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [100] [101] [102] [103] [104] Overfull \hbox (56.55324pt too wide) in paragraph at lines 8914--8914 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Underfull \hbox (badness 10000) in paragraph at lines 8942--8944 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [105] Overfull \hbox (50.80455pt too wide) in paragraph at lines 9074--9074 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [106] [107] [108] [109] Overfull \hbox (102.54274pt too wide) in paragraph at lines 9406--9406 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] [110] Overfull \hbox (125.53749pt too wide) in paragraph at lines 9423--9423 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 9434--9434 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9464--9464 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] Overfull \hbox (30.03963pt too wide) in paragraph at lines 10297--10297 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [121] [122] [123] [124] [125] [126] [127] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10876--10876 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [128] [129] [130] [131] [132] [133] [134] [135] [136] Underfull \hbox (badness 10000) in paragraph at lines 11718--11720 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12756--12756 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [150] Overfull \hbox (50.80455pt too wide) in paragraph at lines 12856--12856 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [151] Chapter 6 [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] Warning: unbalanced parentheses in @def... [167] [168] [169] [170] [171] [172] Underfull \hbox (badness 10000) in paragraph at lines 14762--14768 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [173] [174] Chapter 8 [175] [176] [177] Overfull \hbox (22.06111pt too wide) in paragraph at lines 15174--15174 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [178] Overfull \hbox (33.55849pt too wide) in paragraph at lines 15233--15233 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [179] [180] [181] [182] [183] [184] Underfull \hbox (badness 10000) in paragraph at lines 15736--15743 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [185] [186] Underfull \hbox (badness 10000) in paragraph at lines 15859--15863 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [187] No file R-exts.vrs. (Concept index) [188] No file R-exts.cps. [189] ) (see the transcript file for additional information)pdfTeX warning (\pdffontatt r): fonts @textsl and @defsl have conflicting attributes; I will ignore the att ributes assigned to @textsl Output written on R-exts.pdf (192 pages, 909905 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.toc [-1] [-2] [-3]) [-4] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.toc) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.toc) (Acknowledgements) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 493--496 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2391--2391 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2393--2393 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [27] [28] [29] [30] [31] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2764--2764 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4795--4795 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4797--4797 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4798--4798 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4813--4813 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [55] [56] [57] [58] [59] [60] [61] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5452--5452 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [62] [63] [64] [65] [66] [67] Chapter 2 [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] Underfull \hbox (badness 10000) in paragraph at lines 7023--7030 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7202--7208 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [83] [84] [85] [86] Chapter 3 [87] [88] [89] [90] [91] [92] [93] [94] Chapter 4 [95] [96] [97] [98] [99] Underfull \hbox (badness 10000) in paragraph at lines 8498--8507 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [100] [101] [102] [103] [104] Overfull \hbox (56.55324pt too wide) in paragraph at lines 8914--8914 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Underfull \hbox (badness 10000) in paragraph at lines 8942--8944 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [105] Overfull \hbox (50.80455pt too wide) in paragraph at lines 9074--9074 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [106] [107] [108] [109] Overfull \hbox (102.54274pt too wide) in paragraph at lines 9406--9406 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] [110] Overfull \hbox (125.53749pt too wide) in paragraph at lines 9423--9423 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 9434--9434 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9464--9464 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] Overfull \hbox (30.03963pt too wide) in paragraph at lines 10297--10297 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [121] [122] [123] [124] [125] [126] [127] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10876--10876 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [128] [129] [130] [131] [132] [133] [134] [135] [136] Underfull \hbox (badness 10000) in paragraph at lines 11718--11720 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12756--12756 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [150] Overfull \hbox (50.80455pt too wide) in paragraph at lines 12856--12856 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [151] Chapter 6 [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] Warning: unbalanced parentheses in @def... [167] [168] [169] [170] [171] [172] Underfull \hbox (badness 10000) in paragraph at lines 14762--14768 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [173] [174] Chapter 8 [175] [176] [177] Overfull \hbox (22.06111pt too wide) in paragraph at lines 15174--15174 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [178] Overfull \hbox (33.55849pt too wide) in paragraph at lines 15233--15233 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [179] [180] [181] [182] [183] [184] Underfull \hbox (badness 10000) in paragraph at lines 15736--15743 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [185] [186] Underfull \hbox (badness 10000) in paragraph at lines 15859--15863 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [187] [188] [189] [190] Overfull \vbox (1.73251pt too high) has occurred while \output is active Overfull \vbox (1.73251pt too high) has occurred while \output is active (Concept index) [191] [192] [193] ) (see the transcript file for additional information)pdfTeX warning (\pdffontatt r): fonts @textsl and @defsl have conflicting attributes; I will ignore the att ributes assigned to @textsl Output written on R-exts.pdf (199 pages, 973295 bytes). Transcript written on R-exts.log. tar: R-exts.aux: Cannot stat: No such file or directory tar: Exiting with failure status due to previous errors This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.toc [-1] [-2] [-3]) [-4] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.toc) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.toc) (Acknowledgements) Chapter 1 [1] Writing index file R-exts.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 493--496 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2391--2391 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2393--2393 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [28] [29] [30] [31] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2764--2764 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4795--4795 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4797--4797 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4798--4798 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4813--4813 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [55] [56] [57] [58] [59] [60] [61] [62] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5452--5452 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [63] [64] [65] [66] [67] [68] Chapter 2 [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] Underfull \hbox (badness 10000) in paragraph at lines 7023--7030 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7202--7208 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [83] [84] [85] [86] Chapter 3 [87] [88] [89] [90] [91] [92] [93] [94] Chapter 4 [95] [96] [97] [98] [99] Underfull \hbox (badness 10000) in paragraph at lines 8498--8507 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [100] [101] [102] [103] [104] Overfull \hbox (56.55324pt too wide) in paragraph at lines 8914--8914 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Underfull \hbox (badness 10000) in paragraph at lines 8942--8944 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [105] Overfull \hbox (50.80455pt too wide) in paragraph at lines 9074--9074 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [106] [107] [108] [109] Overfull \hbox (102.54274pt too wide) in paragraph at lines 9406--9406 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] [110] Overfull \hbox (125.53749pt too wide) in paragraph at lines 9423--9423 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 9434--9434 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9464--9464 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] Overfull \hbox (30.03963pt too wide) in paragraph at lines 10297--10297 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [121] [122] [123] [124] [125] [126] [127] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10876--10876 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [128] [129] [130] [131] [132] [133] [134] [135] [136] Underfull \hbox (badness 10000) in paragraph at lines 11718--11720 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12756--12756 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [150] Overfull \hbox (50.80455pt too wide) in paragraph at lines 12856--12856 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [151] Chapter 6 [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] Warning: unbalanced parentheses in @def... [167] [168] [169] [170] [171] [172] Underfull \hbox (badness 10000) in paragraph at lines 14762--14768 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [173] [174] Chapter 8 [175] [176] [177] Overfull \hbox (22.06111pt too wide) in paragraph at lines 15174--15174 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [178] Overfull \hbox (33.55849pt too wide) in paragraph at lines 15233--15233 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [179] [180] [181] [182] [183] [184] Underfull \hbox (badness 10000) in paragraph at lines 15736--15743 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [185] [186] Underfull \hbox (badness 10000) in paragraph at lines 15859--15863 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [187] [188] [189] [190] Overfull \vbox (1.73251pt too high) has occurred while \output is active Overfull \vbox (1.73251pt too high) has occurred while \output is active (Concept index) [191] [192] [193] ) (see the transcript file for additional information)pdfTeX warning (\pdffontatt r): fonts @textsl and @defsl have conflicting attributes; I will ignore the att ributes assigned to @textsl Output written on R-exts.pdf (199 pages, 984472 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.toc [-1] [-2] [-3]) [-4] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.toc) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.toc) (Acknowledgements) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 493--496 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2391--2391 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2393--2393 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [27] [28] [29] [30] [31] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2764--2764 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4795--4795 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4797--4797 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4798--4798 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4813--4813 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [55] [56] [57] [58] [59] [60] [61] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5452--5452 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [62] [63] [64] [65] [66] [67] Chapter 2 [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] Underfull \hbox (badness 10000) in paragraph at lines 7023--7030 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7202--7208 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [83] [84] [85] [86] Chapter 3 [87] [88] [89] [90] [91] [92] [93] [94] Chapter 4 [95] [96] [97] [98] [99] Underfull \hbox (badness 10000) in paragraph at lines 8498--8507 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [100] [101] [102] [103] [104] Overfull \hbox (56.55324pt too wide) in paragraph at lines 8914--8914 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Underfull \hbox (badness 10000) in paragraph at lines 8942--8944 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [105] Overfull \hbox (50.80455pt too wide) in paragraph at lines 9074--9074 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [106] [107] [108] [109] Overfull \hbox (102.54274pt too wide) in paragraph at lines 9406--9406 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] [110] Overfull \hbox (125.53749pt too wide) in paragraph at lines 9423--9423 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 9434--9434 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9464--9464 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] Overfull \hbox (30.03963pt too wide) in paragraph at lines 10297--10297 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [121] [122] [123] [124] [125] [126] [127] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10876--10876 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [128] [129] [130] [131] [132] [133] [134] [135] [136] Underfull \hbox (badness 10000) in paragraph at lines 11718--11720 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12756--12756 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [150] Overfull \hbox (50.80455pt too wide) in paragraph at lines 12856--12856 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [151] Chapter 6 [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] Warning: unbalanced parentheses in @def... [167] [168] [169] [170] [171] [172] Underfull \hbox (badness 10000) in paragraph at lines 14762--14768 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [173] [174] Chapter 8 [175] [176] [177] Overfull \hbox (22.06111pt too wide) in paragraph at lines 15174--15174 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [178] Overfull \hbox (33.55849pt too wide) in paragraph at lines 15233--15233 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [179] [180] [181] [182] [183] [184] Underfull \hbox (badness 10000) in paragraph at lines 15736--15743 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [185] [186] Underfull \hbox (badness 10000) in paragraph at lines 15859--15863 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [187] [188] [189] [190] Overfull \vbox (1.73251pt too high) has occurred while \output is active Overfull \vbox (1.73251pt too high) has occurred while \output is active (Concept index) [191] [192] [193] ) (see the transcript file for additional information)pdfTeX warning (\pdffontatt r): fonts @textsl and @defsl have conflicting attributes; I will ignore the att ributes assigned to @textsl Output written on R-exts.pdf (199 pages, 973314 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2019-03-03.15]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.toc [-1] [-2] [-3]) [-4] (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.toc) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.toc) (Acknowledgements) (/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 493--496 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2391--2391 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2393--2393 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [27] [28] [29] [30] [31] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2764--2764 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4795--4795 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4797--4797 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4798--4798 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4813--4813 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [55] [56] [57] [58] [59] [60] [61] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5452--5452 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [62] [63] [64] [65] [66] [67] Chapter 2 [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] Underfull \hbox (badness 10000) in paragraph at lines 7023--7030 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7202--7208 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [83] [84] [85] [86] Chapter 3 [87] [88] [89] [90] [91] [92] [93] [94] Chapter 4 [95] [96] [97] [98] [99] Underfull \hbox (badness 10000) in paragraph at lines 8498--8507 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [100] [101] [102] [103] [104] Overfull \hbox (56.55324pt too wide) in paragraph at lines 8914--8914 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Underfull \hbox (badness 10000) in paragraph at lines 8942--8944 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [105] Overfull \hbox (50.80455pt too wide) in paragraph at lines 9074--9074 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [106] [107] [108] [109] Overfull \hbox (102.54274pt too wide) in paragraph at lines 9406--9406 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] [110] Overfull \hbox (125.53749pt too wide) in paragraph at lines 9423--9423 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 9434--9434 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9464--9464 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] Overfull \hbox (30.03963pt too wide) in paragraph at lines 10297--10297 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [121] [122] [123] [124] [125] [126] [127] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10876--10876 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [128] [129] [130] [131] [132] [133] [134] [135] [136] Underfull \hbox (badness 10000) in paragraph at lines 11718--11720 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12756--12756 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [150] Overfull \hbox (50.80455pt too wide) in paragraph at lines 12856--12856 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [151] Chapter 6 [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] Warning: unbalanced parentheses in @def... [167] [168] [169] [170] [171] [172] Underfull \hbox (badness 10000) in paragraph at lines 14762--14768 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [173] [174] Chapter 8 [175] [176] [177] Overfull \hbox (22.06111pt too wide) in paragraph at lines 15174--15174 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [178] Overfull \hbox (33.55849pt too wide) in paragraph at lines 15233--15233 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [179] [180] [181] [182] [183] [184] Underfull \hbox (badness 10000) in paragraph at lines 15736--15743 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [185] [186] Underfull \hbox (badness 10000) in paragraph at lines 15859--15863 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [187] [188] [189] [190] Overfull \vbox (1.73251pt too high) has occurred while \output is active Overfull \vbox (1.73251pt too high) has occurred while \output is active (Concept index) [191] [192] [193] ) (see the transcript file for additional information)pdfTeX warning (\pdffontatt r): fonts @textsl and @defsl have conflicting attributes; I will ignore the att ributes assigned to @textsl Output written on R-exts.pdf (199 pages, 973301 bytes). Transcript written on R-exts.log. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' PDF/LaTeX documentation: full reference index ... This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2018-12-01> (/usr/share/texmf-dist/tex/latex/base/book.cls Document Class: book 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texmf-dist/tex/latex/url/url.sty) (/usr/share/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texmf-dist/tex/latex/base/t1enc.def)) (/usr/share/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texmf-dist/tex/latex/inconsolata/zi4.sty `inconsolata-zi4' v1.112, 2017/01/04 Text macros for Inconsolata (msharpe) (/usr/share/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/share/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/share/texmf-dist/tex/generic/xkeyval/xkvutils.tex (/usr/share/texmf-dist/tex/generic/xkeyval/keyval.tex))))) (/usr/share/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/share/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 377. 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(/usr/share/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/usr/share/texmf-dist/fon ts/map/pdftex/updmap/pdftex.map}] [1] [2] [1] [2] (./base-pkg.tex Chapter 1. (/usr/share/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [3] [4] Underfull \hbox (badness 6995) in paragraph at lines 141--149 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt m/m/n/10 if \T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth- er-wise, it is \T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m /n/10 1.110223e-16\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 141--149 \T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi 4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 , [5] [6] Underfull \hbox (badness 1178) in paragraph at lines 297--301 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [7] [8] [9] [10] Underfull \hbox (badness 2556) in paragraph at lines 534--540 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [11] [12] (/usr/share/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13] [14] [15] [16] [17] [18] [19] Underfull \hbox (badness 2671) in paragraph at lines 1178--1181 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] Overfull \hbox (26.27782pt too wide) in paragraph at lines 1966--1966 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [31] [32] [33] [34] [35] [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 2402--2404 []\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci ently) by Underfull \hbox (badness 10000) in paragraph at lines 2405--2410 [][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le ngth re-sults, so at-tempt-ing to split via Underfull \hbox (badness 1102) in paragraph at lines 2405--2410 \T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim -ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Underfull \vbox (badness 10000) has occurred while \output is active [51] [52] [53] [54] [55] [56] [57] Underfull \hbox (badness 10000) in paragraph at lines 3784--3786 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [58] [59] [60] Overfull \hbox (6.42029pt too wide) in paragraph at lines 4025--4025 [] \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...) , recursive=recursive) [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Underfull \hbox (badness 2521) in paragraph at lines 5046--5048 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6202--6202 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [92] [93] [94] [95] [96] [97] Overfull \hbox (46.35893pt too wide) in paragraph at lines 6611--6613 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : [98] [99] Underfull \hbox (badness 10000) in paragraph at lines 6759--6762 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [100] [101] Underfull \hbox (badness 6063) in paragraph at lines 6941--6947 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- Underfull \hbox (badness 2343) in paragraph at lines 6941--6947 \T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files and web-pages gen-er- Underfull \hbox (badness 1708) in paragraph at lines 6941--6947 \T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i s not rec-om-mended) when Underfull \hbox (badness 1831) in paragraph at lines 6941--6947 \T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n /10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or [102] Underfull \hbox (badness 3568) in paragraph at lines 7003--7010 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [103] [104] Underfull \vbox (badness 10000) has occurred while \output is active [105] [106] [107] Underfull \hbox (badness 1077) in paragraph at lines 7330--7336 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7330--7336 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [108] [109] [110] [111] [112] Underfull \hbox (badness 2096) in paragraph at lines 7671--7675 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [113] [114] Underfull \hbox (badness 2351) in paragraph at lines 7789--7792 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [115] [116] [117] [118] [119] Underfull \hbox (badness 4479) in paragraph at lines 8115--8125 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [120] [121] [122] [123] [124] Underfull \hbox (badness 1629) in paragraph at lines 8562--8574 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 1609) in paragraph at lines 8562--8574 \T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/ 10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which Underfull \hbox (badness 2426) in paragraph at lines 8562--8574 \T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that value is on those OSes also used as an er-ror code. [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] Underfull \hbox (badness 1178) in paragraph at lines 9298--9302 []\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][ ]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de- [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] Underfull \hbox (badness 1735) in paragraph at lines 10446--10450 \T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ zi4/m/n/10 https : / / en . wikipedia . [152] [153] [154] [155] [156] [157] [158] Underfull \hbox (badness 6396) in paragraph at lines 10885--10893 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 1946) in paragraph at lines 10885--10893 \T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al- ized'' short-cut for [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] Underfull \hbox (badness 4569) in paragraph at lines 12002--12006 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 12002--12006 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] Underfull \hbox (badness 2253) in paragraph at lines 13665--13667 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [197] Underfull \hbox (badness 1565) in paragraph at lines 13738--13742 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [198] Underfull \hbox (badness 4927) in paragraph at lines 13782--13784 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4 /m/n/10 fsep = [199] Underfull \hbox (badness 3148) in paragraph at lines 13875--13880 [][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4 /m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m /n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider [200] Underfull \hbox (badness 1466) in paragraph at lines 13922--13925 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [201] Underfull \hbox (badness 10000) in paragraph at lines 14049--14053 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14060--14063 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [202] [203] [204] [205] [206] Underfull \hbox (badness 3965) in paragraph at lines 14352--14356 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] Underfull \hbox (badness 4429) in paragraph at lines 15128--15131 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [218] Underfull \hbox (badness 10000) in paragraph at lines 15234--15236 []\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic h calls Underfull \hbox (badness 1215) in paragraph at lines 15234--15236 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times in this case, see [219] Underfull \hbox (badness 10000) in paragraph at lines 15256--15261 []\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T 1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls Underfull \hbox (badness 1558) in paragraph at lines 15256--15261 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m /it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m /n/10 is not Underfull \hbox (badness 10000) in paragraph at lines 15268--15272 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 2426) in paragraph at lines 15268--15272 \T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want Underfull \hbox (badness 2035) in paragraph at lines 15307--15311 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use within [220] [221] [222] [223] [224] [225] [226] [227] [228] Underfull \hbox (badness 2452) in paragraph at lines 15906--15910 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 15906--15910 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [229] [230] [231] Underfull \hbox (badness 1092) in paragraph at lines 16079--16084 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [232] [233] [234] Underfull \hbox (badness 6741) in paragraph at lines 16329--16333 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [235] [236] [237] [238] [239] [240] [241] [242] [243] Underfull \vbox (badness 10000) has occurred while \output is active [244] [245] [246] [247] [248] [249] [250] [251] [252] Underfull \hbox (badness 1478) in paragraph at lines 17622--17625 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [253] [254] [255] [256] Underfull \hbox (badness 10000) in paragraph at lines 17877--17879 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [257] [258] [259] [260] [261] [262] [263] [264] Underfull \hbox (badness 1442) in paragraph at lines 18477--18479 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [265] Underfull \hbox (badness 2452) in paragraph at lines 18569--18585 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [266] [267] [268] [269] [270] [271] Underfull \hbox (badness 1248) in paragraph at lines 18988--18991 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [272] [273] [274] [275] Underfull \hbox (badness 4739) in paragraph at lines 19246--19248 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [276] [277] [278] [279] [280] [281] [282] Underfull \hbox (badness 1596) in paragraph at lines 19665--19670 \T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm /m/n/10 . [283] [284] [285] [286] [287] [288] [289] [290] [291] Underfull \hbox (badness 2469) in paragraph at lines 20269--20274 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and [292] Underfull \hbox (badness 10000) in paragraph at lines 20283--20290 [][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / Underfull \hbox (badness 10000) in paragraph at lines 20357--20361 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 20357--20361 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [293] [294] [295] Underfull \hbox (badness 1014) in paragraph at lines 20527--20532 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [296] [297] [298] [299] [300] [301] [302] [303] [304] [305] [306] Underfull \hbox (badness 1264) in paragraph at lines 21317--21322 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [307] Underfull \hbox (badness 4441) in paragraph at lines 21346--21349 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [308] [309] [310] [311] [312] [313] [314] [315] [316] [317] Underfull \hbox (badness 6047) in paragraph at lines 22093--22095 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) == [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] Underfull \hbox (badness 1077) in paragraph at lines 23134--23140 \T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][ ]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T 1/zi4/m/n/10 https : / / en . wikipedia . [334] [335] [336] [337] [338] [339] [340] [341] Underfull \hbox (badness 2790) in paragraph at lines 23630--23633 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 23630--23633 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [342] [343] [344] [345] Underfull \hbox (badness 1194) in paragraph at lines 23912--23915 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [346] [347] Underfull \hbox (badness 2368) in paragraph at lines 24118--24124 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing list, i.e., Underfull \hbox (badness 4981) in paragraph at lines 24118--24124 \T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names = [348] [349] [350] [351] [352] [353] Underfull \hbox (badness 10000) in paragraph at lines 24500--24503 []\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even- tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by [354] [355] [356] [357] [358] [359] [360] [361] [362] Underfull \hbox (badness 10000) in paragraph at lines 25105--25107 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in% [363] [364] [365] [366] [367] [368] [369] [370] [371] [372] [373] [374] Underfull \hbox (badness 1038) in paragraph at lines 25945--25953 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1735) in paragraph at lines 25945--25953 \T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_ DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un- Underfull \hbox (badness 1292) in paragraph at lines 25945--25953 \T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics ","stats","methods")\T1/ptm/m/n/10 . (Set Underfull \hbox (badness 1881) in paragraph at lines 25954--25957 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 25973--25975 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [375] Underfull \hbox (badness 2142) in paragraph at lines 26114--26118 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [376] Underfull \hbox (badness 1968) in paragraph at lines 26164--26169 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [377] [378] [379] Underfull \hbox (badness 10000) in paragraph at lines 26452--26458 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 26452--26458 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 26452--26458 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 26465--26468 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 26491--26493 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [380] Underfull \hbox (badness 10000) in paragraph at lines 26526--26531 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 26532--26543 \T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n /10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 26532--26543 \T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m /n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and Underfull \hbox (badness 7203) in paragraph at lines 26544--26547 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 10000) in paragraph at lines 26568--26573 []\T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (the de-fault ex-cept un-der a CRAN ma -cOS build), Underfull \hbox (badness 2057) in paragraph at lines 26568--26573 \T1/zi4/m/n/10 "mac.binary.el-capitan" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS builds). [381] [382] [383] [384] [385] [386] [387] Underfull \hbox (badness 10000) in paragraph at lines 27086--27089 []\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s ) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of [388] Underfull \hbox (badness 7925) in paragraph at lines 27165--27169 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n /10 cor-re-sponds to Underfull \hbox (badness 1622) in paragraph at lines 27165--27169 [][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\ T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 6125) in paragraph at lines 27170--27179 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor -re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text = [389] [390] [391] [392] [393] [394] [395] [396] [397] [398] [399] Underfull \hbox (badness 2726) in paragraph at lines 27891--27894 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [400] [401] [402] [403] [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] [416] [417] [418] [419] [420] [421] [422] [423] [424] Underfull \hbox (badness 1533) in paragraph at lines 29582--29585 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [425] [426] Underfull \hbox (badness 1163) in paragraph at lines 29745--29756 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [427] [428] [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] Underfull \hbox (badness 10000) in paragraph at lines 31291--31295 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 31291--31295 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. [449] Underfull \hbox (badness 6188) in paragraph at lines 31313--31315 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [450] [451] [452] [453] [454] [455] [456] [457] Underfull \hbox (badness 1655) in paragraph at lines 31869--31871 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [458] [459] [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] Underfull \hbox (badness 2261) in paragraph at lines 32988--32993 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if [474] Underfull \hbox (badness 10000) in paragraph at lines 33015--33021 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters Underfull \hbox (badness 1484) in paragraph at lines 33015--33021 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal and hex-adec-i-mal rep-re-sen-ta-tions like [475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] Underfull \hbox (badness 1072) in paragraph at lines 36157--36161 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 36162--36166 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', [519] Underfull \hbox (badness 10000) in paragraph at lines 36190--36196 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 36190--36196 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 36190--36196 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 36202--36209 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 36202--36209 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 36202--36209 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 36202--36209 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [520] [521] [522] [523] [524] Underfull \hbox (badness 1142) in paragraph at lines 36556--36562 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d [525] [526] [527] [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] Underfull \hbox (badness 1565) in paragraph at lines 37829--37831 []\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t ype) \T1/ptm/m/n/10 for the de-fault [544] [545] [546] [547] [548] [549] [550] [551] [552] Underfull \hbox (badness 4967) in paragraph at lines 38428--38433 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [553] [554] Underfull \hbox (badness 1616) in paragraph at lines 38541--38546 \T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes , pro-vided only the POSIX op-tions [555] [556] [557] [558] [559] [560] [561] [562] Underfull \hbox (badness 1472) in paragraph at lines 39067--39070 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] Underfull \hbox (badness 10000) in paragraph at lines 39981--39985 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10 length(bin) > [576] [577] [578] [579] Underfull \hbox (badness 10000) in paragraph at lines 40232--40235 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [580] [581] [582] Underfull \hbox (badness 10000) in paragraph at lines 40416--40420 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [583] [584] [585] [586] [587] [588] [589] [590] Underfull \hbox (badness 10000) in paragraph at lines 41029--41032 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [591] [592] [593] [594] [595] Underfull \vbox (badness 10000) has occurred while \output is active [596] [597] [598] [599] [600] [601] [602] [603] Underfull \hbox (badness 1990) in paragraph at lines 41933--41941 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 41933--41941 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [604] [605] [606] [607] [608] [609] [610] Underfull \hbox (badness 1917) in paragraph at lines 42439--42446 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [611] [612] [613] [614] [615] [616] [617] [618] [619] [620] Underfull \hbox (badness 3668) in paragraph at lines 43168--43170 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [621] [622] Underfull \hbox (badness 2401) in paragraph at lines 43296--43300 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [623] [624] [625] Underfull \hbox (badness 2111) in paragraph at lines 43485--43490 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 10000) in paragraph at lines 43506--43511 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [626] [627] [628] [629] [630] [631] [632] [633] Underfull \hbox (badness 5417) in paragraph at lines 44088--44092 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [634] Underfull \hbox (badness 10000) in paragraph at lines 44149--44153 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [635] [636]) (./compiler-pkg.tex Chapter 2. [637] [638] [639] [640]) (./datasets-pkg.tex Chapter 3. [641] [642] [643] [644] [645] [646] Underfull \vbox (badness 1472) has occurred while \output is active [647] [648] [649] [650] [651] [652] [653] [654] [655] Underfull \hbox (badness 1097) in paragraph at lines 1031--1035 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] Overfull \vbox (4.26088pt too high) has occurred while \output is active [678] [679] [680] [681] [682] [683] Overfull \vbox (13.87083pt too high) has occurred while \output is active [684] Underfull \vbox (badness 2376) has occurred while \output is active [685] [686] Overfull \vbox (12.25539pt too high) has occurred while \output is active [687] [688] Overfull \vbox (17.12102pt too high) has occurred while \output is active [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] Overfull \vbox (10.49593pt too high) has occurred while \output is active [700] Overfull \vbox (15.49593pt too high) has occurred while \output is active [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715]) (./grDevices-pkg.tex [716] Chapter 4. [717] [718] [719] [720] Underfull \hbox (badness 3158) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm /m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/ m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1 0 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [721] [722] [723] [724] [725] [726] [727] [728] Underfull \hbox (badness 1424) in paragraph at lines 830--832 [][][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) and \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i -fied as [729] [730] [731] [732] [733] Underfull \hbox (badness 5175) in paragraph at lines 1124--1126 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [734] [735] [736] Underfull \hbox (badness 1852) in paragraph at lines 1326--1329 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [737] [738] [739] Underfull \hbox (badness 1490) in paragraph at lines 1532--1537 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [740] [741] [742] [743] [744] [745] Underfull \hbox (badness 1325) in paragraph at lines 1938--1948 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [746] Underfull \hbox (badness 10000) in paragraph at lines 2050--2052 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [747] [748] [749] Underfull \hbox (badness 6758) in paragraph at lines 2228--2231 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [750] [751] [752] [753] [754] [755] [756] [757] [758] Underfull \hbox (badness 10000) in paragraph at lines 2832--2833 Underfull \vbox (badness 10000) has occurred while \output is active [759] [760] [761] [762] [763] [764] [765] [766] Underfull \hbox (badness 10000) in paragraph at lines 3388--3393 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [767] [768] [769] [770] [771] [772] Underfull \hbox (badness 10000) in paragraph at lines 3789--3792 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] Underfull \hbox (badness 10000) in paragraph at lines 4518--4523 [][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en / devnet / actionscript / articles / PLRM . pdf$[][] Underfull \hbox (badness 4181) in paragraph at lines 4518--4523 \T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / devne t / acrobat / pdfs / pdf _ reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in [783] [784] Underfull \hbox (badness 1067) in paragraph at lines 4672--4679 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [785] [786] [787] [788] Underfull \hbox (badness 1377) in paragraph at lines 4975--4980 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [789] Underfull \hbox (badness 1418) in paragraph at lines 5051--5058 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , [790] Underfull \hbox (badness 1755) in paragraph at lines 5069--5071 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [791] Underfull \hbox (badness 1377) in paragraph at lines 5180--5185 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and [792] Underfull \hbox (badness 7344) in paragraph at lines 5249--5251 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [793] [794] Underfull \hbox (badness 2035) in paragraph at lines 5384--5393 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5384--5393 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5384--5393 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [795] Underfull \hbox (badness 10000) in paragraph at lines 5452--5459 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5452--5459 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . [796] [797] Underfull \hbox (badness 1546) in paragraph at lines 5594--5602 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [798] [799] [800] [801] [802] [803] [804] [805] Underfull \hbox (badness 10000) in paragraph at lines 6129--6132 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [806] [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] [817] Underfull \hbox (badness 1189) in paragraph at lines 6951--6953 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [818] Underfull \hbox (badness 10000) in paragraph at lines 7049--7051 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [819] [820] [821] [822] [823] Underfull \hbox (badness 3780) in paragraph at lines 7349--7355 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [824] [825] Underfull \hbox (badness 2680) in paragraph at lines 7550--7552 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [826] [827] [828]) (./graphics-pkg.tex Chapter 5. [829] [830] [831] [832] [833] [834] [835] [836] [837] [838] [839] [840] [841] [842] [843] Underfull \vbox (badness 10000) has occurred while \output is active [844] [845] [846] [847] [848] [849] Underfull \hbox (badness 4634) in paragraph at lines 1351--1354 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [850] [851] [852] [853] [854] [855] [856] [857] [858] [859] [860] [861] [862] [863] Underfull \hbox (badness 1728) in paragraph at lines 2308--2310 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use \T1/zi4/m/n/10 "n " \T1/ptm/m/n/10 to sup-press and see also [864] [865] Underfull \hbox (badness 1009) in paragraph at lines 2399--2406 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] [878] [879] [880] [881] [882] [883] [884] [885] Underfull \vbox (badness 10000) has occurred while \output is active [886] Underfull \vbox (badness 10000) has occurred while \output is active [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] Underfull \hbox (badness 3229) in paragraph at lines 4544--4549 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [898] [899] [900] [901] [902] Underfull \hbox (badness 10000) in paragraph at lines 4901--4907 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4901--4907 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [903] [904] Underfull \hbox (badness 10000) in paragraph at lines 5032--5035 [905 ] Underfull \hbox (badness 10000) in paragraph at lines 5093--5095 [906 ] [907] Underfull \hbox (badness 10000) in paragraph at lines 5283--5285 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [908] Underfull \vbox (badness 10000) has occurred while \output is active [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] [919] [920] [921] [922] [923] [924] [925] [926] [927] [928] [929] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6761--6762 [][] [930 ] [931] Underfull \vbox (badness 10000) has occurred while \output is active [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] Underfull \hbox (badness 2012) in paragraph at lines 7586--7589 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi nt [943] [944] [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] [957] [958] [959] [960] [961] Underfull \hbox (badness 10000) in paragraph at lines 8846--8848 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8848--8850 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [962]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8928 \HeaderA{units}{Graphical Units}{units} [963] [964] [965] [966]) (./grid-pkg.tex Chapter 6. [967] [968] [969] [970] [971] [972] [973] [974] Underfull \hbox (badness 2680) in paragraph at lines 483--486 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [975] [976] [977] [978] [979] [980] [981] [982] [983] Underfull \hbox (badness 4279) in paragraph at lines 1064--1073 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [984] [985] [986] [987] [988] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] Underfull \vbox (badness 10000) has occurred while \output is active [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] Underfull \hbox (badness 1067) in paragraph at lines 4486--4489 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1037] [1038] [1039] [1040] Underfull \hbox (badness 7256) in paragraph at lines 4731--4733 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] Underfull \hbox (badness 1824) in paragraph at lines 6535--6538 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like \T1/zi4/m/n/10 depth [1069] [1070] [1071] [1072]) (./methods-pkg.tex Chapter 7. [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] Underfull \vbox (badness 10000) has occurred while \output is active [1081] Underfull \vbox (badness 10000) has occurred while \output is active [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] [1090] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] Underfull \hbox (badness 2181) in paragraph at lines 1932--1939 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1099] [1100] [1101] Underfull \hbox (badness 2213) in paragraph at lines 2214--2219 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1102] [1103] [1104] [1105] [1106] Underfull \hbox (badness 10000) in paragraph at lines 2574--2577 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1107] [1108] Underfull \hbox (badness 1132) in paragraph at lines 2714--2718 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2746--2751 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1109] [1110] [1111] [1112] [1113] [1114] [1115] Underfull \hbox (badness 1102) in paragraph at lines 3303--3305 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1116] [1117] [1118] [1119] [1120] Underfull \hbox (badness 10000) in paragraph at lines 3634--3639 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3642--3651 []\T1/ptm/m/n/10 The [1121] [1122] Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude = "numeric",altitude [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] [1131] Underfull \hbox (badness 1769) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4472--4478 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] Underfull \vbox (badness 10000) has occurred while \output is active [1141] Underfull \vbox (badness 10000) has occurred while \output is active [1142] [1143] [1144] Underfull \hbox (badness 4036) in paragraph at lines 5437--5440 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1145] Underfull \hbox (badness 3803) in paragraph at lines 5512--5514 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1146] [1147] [1148] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1157] [1158] [1159] [1160] Underfull \vbox (badness 10000) has occurred while \output is active [1161] [1162] [1163]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6973 \aliasA{S4}{S3Part}{S4} [1164] [1165] [1166]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7229 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7231 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7232 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7234 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7235 \aliasA{Summary}{S4groupGeneric}{Summary} [1167] Underfull \hbox (badness 2050) in paragraph at lines 7296--7300 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1168] [1169] Underfull \hbox (badness 1286) in paragraph at lines 7484--7486 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1170] [1171] [1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] Underfull \hbox (badness 1137) in paragraph at lines 10011--10019 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne w("signature",functionDef,...)\T1/ptm/m/n/10 . The [1203] [1204] [1205] [1206] [1207] [1208] [1209] Underfull \hbox (badness 1852) in paragraph at lines 10564--10568 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1210] [1211] [1212]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] Underfull \hbox (badness 3386) in paragraph at lines 1365--1368 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1233] [1234]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248]) (./stats-pkg.tex Chapter 10. [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] Underfull \hbox (badness 1412) in paragraph at lines 875--877 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1262] [1263] [1264] [1265] [1266] [1267] [1268] Underfull \hbox (badness 2503) in paragraph at lines 1356--1359 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1269] [1270] Underfull \hbox (badness 10000) in paragraph at lines 1536--1540 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1 0 or for mul-ti-ple re-sponses of class [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] [1289] [1290] [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] Underfull \hbox (badness 2503) in paragraph at lines 3437--3440 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312] Underfull \hbox (badness 1127) in paragraph at lines 4351--4354 []\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) / sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the [1313] [1314] [1315] [1316] [1317] Underfull \hbox (badness 3989) in paragraph at lines 4681--4688 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1318] [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] Underfull \hbox (badness 2556) in paragraph at lines 5317--5320 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5334--5336 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1327] [1328] [1329] [1330] [1331] [1332] Underfull \hbox (badness 2503) in paragraph at lines 5726--5730 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345] Underfull \hbox (badness 7081) in paragraph at lines 6520--6523 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6524--6526 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] Underfull \hbox (badness 10000) in paragraph at lines 7369--7372 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] Underfull \vbox (badness 10000) has occurred while \output is active [1379] [1380] [1381] [1382] Underfull \hbox (badness 2626) in paragraph at lines 9048--9051 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1383] [1384] Underfull \hbox (badness 2503) in paragraph at lines 9155--9159 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] Underfull \hbox (badness 4518) in paragraph at lines 10469--10474 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1404] [1405] [1406] [1407] [1408] Underfull \hbox (badness 2142) in paragraph at lines 10830--10833 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10849--10852 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1409] Underfull \hbox (badness 1708) in paragraph at lines 10911--10915 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1410] [1411] [1412] [1413] [1414] Underfull \hbox (badness 1694) in paragraph at lines 11307--11310 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11791 \aliasA{hat}{influence.measures}{hat} [1423] [1424] Underfull \hbox (badness 1484) in paragraph at lines 11926--11928 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433] Underfull \hbox (badness 10000) in paragraph at lines 12519--12521 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit = [1434] [1435] [1436] [1437] [1438] Underfull \hbox (badness 2894) in paragraph at lines 12855--12859 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] Underfull \hbox (badness 4518) in paragraph at lines 13605--13610 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1451] [1452] [1453] [1454] [1455] [1456] [1457] [1458] [1459] Underfull \hbox (badness 4518) in paragraph at lines 14257--14262 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1460] [1461] Underfull \hbox (badness 8151) in paragraph at lines 14395--14399 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp olate",statistics = Underfull \hbox (badness 1199) in paragraph at lines 14402--14404 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] Underfull \hbox (badness 2503) in paragraph at lines 15473--15477 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1479] [1480] [1481] [1482] [1483] [1484] [1485] Underfull \hbox (badness 4621) in paragraph at lines 15985--15991 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(,"offset") \T1/ ptm/m/n/10 and [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] Underfull \vbox (badness 10000) has occurred while \output is active [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] [1525] Underfull \hbox (badness 1377) in paragraph at lines 18588--18593 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18593--18596 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 18606--18610 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 18606--18610 \T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re ltol) \T1/ptm/m/n/10 at a step. De-faults to [1526] Underfull \hbox (badness 2662) in paragraph at lines 18614--18618 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1527] [1528] Underfull \vbox (badness 10000) has occurred while \output is active [1529] Overfull \hbox (15.73795pt too wide) in paragraph at lines 18839--18839 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 18842--18842 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1530] [1531] [1532] [1533] [1534] [1535] Underfull \hbox (badness 1337) in paragraph at lines 19264--19267 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] Underfull \hbox (badness 3049) in paragraph at lines 19760--19764 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1545] [1546] [1547] [1548] Underfull \hbox (badness 1194) in paragraph at lines 20018--20021 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1549] [1550] [1551] [1552] [1553] [1554] Underfull \hbox (badness 2503) in paragraph at lines 20397--20400 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 20424--20426 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] Underfull \hbox (badness 10000) in paragraph at lines 21501--21507 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] Underfull \hbox (badness 1337) in paragraph at lines 22855--22861 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] Overfull \hbox (27.74408pt too wide) in paragraph at lines 23420--23420 [] \T1/zi4/m/n/9 t(vapply(1:9, function(typ) quantile(x, prob=prob, type = ty p, ...), quantile(x, prob, type=1)))[] [1601] [1602] [1603] Underfull \hbox (badness 10000) in paragraph at lines 23671--23674 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by Underfull \hbox (badness 4205) in paragraph at lines 23671--23674 \T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for ef-fi-ciency if al-ready [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] Underfull \hbox (badness 1824) in paragraph at lines 24257--24263 []\T1/ptm/m/n/10 Here, all the NAs in \T1/zi4/m/n/10 x \T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24257--24263 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where Underfull \hbox (badness 10000) in paragraph at lines 24278--24281 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] = [1613] Underfull \hbox (badness 3690) in paragraph at lines 24347--24351 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] Underfull \hbox (badness 2165) in paragraph at lines 24856--24861 []\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm /m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1 0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [1622] [1623] [1624] [1625] Underfull \hbox (badness 1867) in paragraph at lines 25061--25063 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25074--25078 \T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = u se.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP [1626] [1627] [1628] [1629] [1630] [1631] [1632] [1633] [1634] [1635] Underfull \vbox (badness 10000) has occurred while \output is active [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] Underfull \vbox (badness 10000) has occurred while \output is active [1647] [1648] Underfull \hbox (badness 3514) in paragraph at lines 26634--26639 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1649] [1650] [1651] Overfull \hbox (2.23795pt too wide) in paragraph at lines 26868--26868 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1652] Underfull \hbox (badness 3514) in paragraph at lines 26904--26910 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1653] [1654] [1655] Underfull \hbox (badness 3514) in paragraph at lines 27118--27123 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1656] [1657] Underfull \hbox (badness 3514) in paragraph at lines 27205--27210 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1658] Underfull \hbox (badness 3514) in paragraph at lines 27270--27275 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1659] Underfull \hbox (badness 3514) in paragraph at lines 27364--27369 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1660] [1661] Underfull \hbox (badness 6691) in paragraph at lines 27456--27461 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] Underfull \hbox (badness 4024) in paragraph at lines 27984--27987 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] Underfull \hbox (badness 5431) in paragraph at lines 28590--28592 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1680] [1681] [1682] Underfull \hbox (badness 5431) in paragraph at lines 28800--28803 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1683] [1684] [1685] [1686] [1687] Underfull \hbox (badness 1337) in paragraph at lines 29114--29118 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1688] [1689] [1690] [1691] [1692] Underfull \hbox (badness 1616) in paragraph at lines 29416--29419 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] Underfull \hbox (badness 3557) in paragraph at lines 30546--30550 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4 /m/n/10 interval = [1710] [1711] [1712] [1713] [1714] [1715] Underfull \hbox (badness 1337) in paragraph at lines 30910--30914 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] Underfull \hbox (badness 1337) in paragraph at lines 31437--31441 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732]) (./stats4-pkg.tex Chapter 11. [1733] [1734] [1735] [1736] [1737] [1738]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1739] [1740] [1741]) (./tcltk-pkg.tex [1742] Chapter 12. [1743] [1744] [1745] [1746] [1747] [1748] [1749] Underfull \vbox (badness 10000) has occurred while \output is active [1750] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1751] [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762]) (./tools-pkg.tex Chapter 13. [1763] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1764] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1765] [1766] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1767] Underfull \hbox (badness 3039) in paragraph at lines 389--391 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1768] [1769] [1770] [1771] [1772] [1773] [1774] Overfull \vbox (7.18602pt too high) has occurred while \output is active [1775] [1776] [1777] [1778] [1779] Underfull \hbox (badness 4441) in paragraph at lines 1139--1149 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1780] Underfull \hbox (badness 1014) in paragraph at lines 1163--1165 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1169--1171 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1206--1209 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1206--1209 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1781] [1782] [1783] [1784] [1785] Underfull \hbox (badness 2293) in paragraph at lines 1558--1560 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1786] [1787] Underfull \hbox (badness 7981) in paragraph at lines 1696--1701 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1788] Underfull \hbox (badness 1082) in paragraph at lines 1703--1705 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1789] [1790] [1791]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1900 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1792] [1793] [1794] [1795] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2202--2202 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1796] [1797] [1798] Underfull \hbox (badness 7981) in paragraph at lines 2371--2377 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1799] [1800] [1801] [1802] [1803] [1804] [1805] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2846. [1806] [1807] [1808] [1809] Underfull \hbox (badness 1424) in paragraph at lines 3128--3130 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1810] [1811] [1812] [1813] [1814] [1815] [1816] [1817] [1818] [1819] [1820] Underfull \hbox (badness 10000) in paragraph at lines 3832--3834 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1821] [1822] Underfull \hbox (badness 10000) in paragraph at lines 3971--3974 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/sl/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/sl/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1823] Underfull \hbox (badness 1137) in paragraph at lines 4073--4075 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1824] [1825] [1826] [1827] [1828] Underfull \hbox (badness 1796) in paragraph at lines 4381--4386 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T 1/zi4/m/sl/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/sl/10 type == [1829] Underfull \hbox (badness 1838) in paragraph at lines 4455--4461 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4455--4461 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1830] [1831] [1832] Underfull \hbox (badness 2197) in paragraph at lines 4671--4681 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/sl/10 available.packages[][][]\T1/ptm/m/n/10 : [1833] Underfull \hbox (badness 1571) in paragraph at lines 4734--4738 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1834] [1835] [1836]) (./utils-pkg.tex Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1837] [1838] [1839] [1840] [1841] Underfull \hbox (badness 10000) in paragraph at lines 376--381 \T1/zi4/m/sl/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p tm/m/n/10 with [1842] [1843] [1844] [1845] [1846] Underfull \hbox (badness 10000) in paragraph at lines 717--723 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 717--723 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1847] [1848] Underfull \hbox (badness 5847) in paragraph at lines 850--856 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 850--856 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1849] Underfull \hbox (badness 3861) in paragraph at lines 918--923 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1850] [1851] [1852] Underfull \hbox (badness 3323) in paragraph at lines 1089--1097 []\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/sl/1 0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1 /ptm/m/n/10 , in-di-cat- Underfull \hbox (badness 2961) in paragraph at lines 1089--1097 \T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f or-mat- Underfull \hbox (badness 3919) in paragraph at lines 1089--1097 \T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 3735) in paragraph at lines 1089--1097 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/sl/10 getOption[][][]("citation.bibtex.ma x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/sl/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 1089--1097 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1101--1103 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1853] [1854] [1855] [1856] [1857] [1858] [1859] Underfull \hbox (badness 1371) in paragraph at lines 1606--1608 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] [1868] Underfull \hbox (badness 2057) in paragraph at lines 2215--2217 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1869] [1870] [1871] [1872] [1873]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.clipboard}) has been already used, duplicate ignored \relax l.2566 ... the Clipboard in MS Windows}{clipboard} [1874] [1875] Underfull \hbox (badness 1748) in paragraph at lines 2733--2736 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1876] [1877] [1878] [1879] [1880] [1881] Underfull \hbox (badness 5388) in paragraph at lines 3142--3146 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/sl/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/sl/10 .TXT\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[][][](...,header = Underfull \hbox (badness 2285) in paragraph at lines 3147--3150 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[] [][](...,header = TRUE,sep = [1882] [1883] [1884] [1885] [1886] [1887] [1888] [1889] [1890] [1891] [1892] Underfull \hbox (badness 1430) in paragraph at lines 3906--3914 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the [1893] Underfull \hbox (badness 1231) in paragraph at lines 3983--3995 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1894] [1895] Underfull \hbox (badness 10000) in paragraph at lines 4141--4143 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/sl/10 dow nload.file[][][] \T1/ptm/m/n/10 and [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905]pdfTeX war ning (ext4): destination with the same identifier (name{Rfn.format}) has been a lready used, duplicate ignored \relax l.4839 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4839 ...mat Unordered and Ordered Lists}{format} [1906] [1907] [1908] [1909] [1910] [1911] [1912] [1913] Underfull \hbox (badness 1622) in paragraph at lines 5358--5362 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] Underfull \hbox (badness 1371) in paragraph at lines 5994--5996 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1923] Underfull \hbox (badness 1502) in paragraph at lines 6083--6088 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6083--6088 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1924] [1925] [1926] Underfull \hbox (badness 10000) in paragraph at lines 6256--6265 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1927] Underfull \hbox (badness 2150) in paragraph at lines 6320--6323 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [1928] [1929] Underfull \hbox (badness 3118) in paragraph at lines 6458--6460 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [1930] [1931] Underfull \hbox (badness 1325) in paragraph at lines 6630--6634 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able Underfull \hbox (badness 4726) in paragraph at lines 6642--6648 \T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of [1932] Underfull \hbox (badness 10000) in paragraph at lines 6714--6717 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be Underfull \hbox (badness 10000) in paragraph at lines 6714--6717 \T1/ptm/m/n/10 passed to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou rce pack-age in-stall. E.g., [1933] Underfull \hbox (badness 3219) in paragraph at lines 6790--6797 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 6790--6797 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 6790--6797 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 6790--6797 [][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")\T1/ ptm/m/n/10 . \T1/zi4/m/sl/10 type = "both" \T1/ptm/m/n/10 will be silently Underfull \hbox (badness 2932) in paragraph at lines 6798--6801 []\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/sl/10 type = "source" \T1/ptm/m /n/10 al-ways works pro-vided the pack-age con-tains no [1934] Underfull \hbox (badness 10000) in paragraph at lines 6934--6939 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942] [1943] [1944] [1945] [1946] [1947] [1948] [1949] [1950] [1951] [1952] [1953] [1954] [1955] [1956] [1957] Underfull \hbox (badness 10000) in paragraph at lines 8434--8436 []\T1/ptm/m/n/10 for \T1/zi4/m/sl/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi 4/m/sl/10 character[][][] \T1/ptm/m/n/10 string as from [1958] Underfull \hbox (badness 2310) in paragraph at lines 8456--8461 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1959] [1960] [1961] [1962] [1963] [1964] [1965] Underfull \hbox (badness 1248) in paragraph at lines 8980--8984 []\T1/zi4/m/sl/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/ n/10 source tar-balls. The name(s) of the pack-ages are taken from the [1966] Underfull \hbox (badness 1789) in paragraph at lines 9058--9060 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1967] [1968] [1969] [1970] [1971] [1972] [1973] [1974] [1975] Underfull \vbox (badness 5533) has occurred while \output is active [1976] [1977] [1978] Underfull \hbox (badness 1097) in paragraph at lines 9895--9898 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [1979] [1980] Underfull \hbox (badness 3000) in paragraph at lines 10031--10036 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [1981] [1982] [1983] [1984] [1985] [1986] [1987] [1988] Underfull \hbox (badness 2134) in paragraph at lines 10614--10619 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [1989] Underfull \hbox (badness 10000) in paragraph at lines 10670--10675 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 10670--10675 \T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 HKEY_CLASSES _ROOT\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 , [1990] [1991] [1992] [1993] [1994] [1995] [1996] Underfull \hbox (badness 2469) in paragraph at lines 11163--11167 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11163--11167 [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [1997] [1998] [1999] [2000] [2001] Underfull \hbox (badness 4060) in paragraph at lines 11494--11497 []\T1/ptm/m/n/10 If `\T1/zi4/m/sl/10 --default-packages\T1/ptm/m/n/10 ' is not used, then \T1/zi4/m/sl/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var i-able [2002] Overfull \hbox (18.77168pt too wide) in paragraph at lines 11517--11517 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2003] [2004] [2005] Underfull \hbox (badness 2150) in paragraph at lines 11756--11758 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2006] [2007] [2008] [2009] Underfull \hbox (badness 10000) in paragraph at lines 11975--11979 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12006--12012 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2010] [2011] Underfull \hbox (badness 1009) in paragraph at lines 12200--12212 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2012] Underfull \hbox (badness 4779) in paragraph at lines 12237--12239 []\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI (\T1/zi4/m/sl/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a nd Underfull \hbox (badness 1077) in paragraph at lines 12267--12274 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2013] [2014] [2015] [2016] [2017] [2018] Underfull \hbox (badness 3780) in paragraph at lines 12668--12672 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 12684--12687 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2019] [2020] [2021] Underfull \hbox (badness 2302) in paragraph at lines 12889--12891 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2022] [2023] [2024] [2025] [2026] Underfull \hbox (badness 10000) in paragraph at lines 13185--13190 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/sl/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 13194--13197 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2027] Underfull \vbox (badness 10000) has occurred while \output is active [2028] [2029] [2030] [2031] [2032] Underfull \hbox (badness 2932) in paragraph at lines 13614--13621 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 13614--13621 \T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/sl/10 extension \T1/ptm/m/n/10 com-po-nent matches (as a reg-exp) the file name. Ob- [2033] [2034] [2035] [2036] Underfull \hbox (badness 6510) in paragraph at lines 13923--13927 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 13930--13933 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 13930--13933 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2037] [2038] [2039] [2040] [2041] [2042] [2043] [2044] [2045] Underfull \hbox (badness 10000) in paragraph at lines 14594--14599 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 14594--14599 [][]\T1/zi4/m/sl/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 i gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 max_repo_cache_age \T1/ptm/m/n /10 and [2046] Underfull \hbox (badness 1052) in paragraph at lines 14600--14602 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See Underfull \hbox (badness 10000) in paragraph at lines 14659--14662 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] [2056] [2057] [2058] Underfull \hbox (badness 10000) in paragraph at lines 15432--15434 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. \T1/zi4/m/sl/10 file = [2059] [2060] [2061]) [2062] [2063] [2064] (./KernSmooth-pkg.tex Chapter 15. [2065] [2066] [2067] [2068] [2069] [2070] [2071] [2072] [2073] [2074]) (./MASS-pkg.tex Chapter 16. [2075] [2076] [2077] [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087] [2088] [2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] [2108] [2109] [2110] [2111] Underfull \hbox (badness 7944) in paragraph at lines 2698--2701 []\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/sl/10 plot \T1/ptm/m/n/10 an d graph-i-cal pa-ram-e-ters. Note that [2112] [2113] [2114] Underfull \hbox (badness 10000) in paragraph at lines 2868--2873 \T1/zi4/m/sl/10 "geometric"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "log-normal"\T1/ptm /m/n/10 , \T1/zi4/m/sl/10 "lognormal"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "logistic "\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "negative [2115] [2116] Underfull \hbox (badness 4686) in paragraph at lines 3036--3038 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] [2132] [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] Underfull \hbox (badness 1117) in paragraph at lines 4797--4800 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/sl/10 response ~ [2142] Underfull \hbox (badness 1117) in paragraph at lines 4875--4878 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/sl/10 response ~ [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] [2159]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.npk}) has been already used, duplicate ignored \relax l.6123 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6123 ...sical N, P, K Factorial Experiment}{npk} [2160] [2161] [2162] [2163] [2164] Underfull \vbox (badness 10000) has occurred while \output is active [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] Underfull \hbox (badness 1117) in paragraph at lines 7094--7101 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/sl/10 response ~ [2173] Underfull \hbox (badness 3138) in paragraph at lines 7165--7171 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2174] [2175] [2176] Underfull \hbox (badness 6775) in paragraph at lines 7344--7347 \T1/ptm/m/n/10 only the first \T1/zi4/m/sl/10 dimen \T1/ptm/m/n/10 dis-crim-i-n ant com-po-nents are used (ex-cept for [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] Underfull \hbox (badness 4686) in paragraph at lines 7977--7979 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2186] [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206] [2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] [2219] [2220] [2221] [2222]) (./Matrix-pkg.tex Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 41--44 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 41--44 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2223] Underfull \hbox (badness 1769) in paragraph at lines 95--98 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2224] [2225] [2226] [2227] Underfull \hbox (badness 5119) in paragraph at lines 508--512 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2228] [2229] Underfull \hbox (badness 2418) in paragraph at lines 597--600 []\T1/ptm/m/n/10 The value of \T1/zi4/m/sl/10 bdiag() \T1/ptm/m/n/10 in-heris f rom class [][]\T1/zi4/m/sl/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1/z i4/m/sl/10 .bdiag() \T1/ptm/m/n/10 re-turns a [2230] [2231] [2232] [2233] [2234] Underfull \hbox (badness 10000) in paragraph at lines 1022--1024 []\T1/zi4/m/sl/10 signature(from = "CHMfactor",to = "sparseMatrix") \T1/ptm/m/n /10 (or equiv-a-lently, \T1/zi4/m/sl/10 to = [2235] [2236]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol}) has been already used, duplicate ignored \relax l.1134 ...- 'Matrix' S4 Generic and Methods}{chol} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic ate ignored \relax l.1134 ...- 'Matrix' S4 Generic and Methods}{chol} Underfull \hbox (badness 1117) in paragraph at lines 1189--1195 \T1/ptm/m/n/10 sider [][]\T1/zi4/m/sl/10 Cholesky[][][]() \T1/ptm/m/n/10 in suc h sit-u-a-tions, since \T1/zi4/m/sl/10 chol(x,pivot=TRUE) \T1/ptm/m/n/10 uses t he same al-go-rithm [2237pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol ,dsCMatrix.Rdash.method}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,lsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,nsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works via] [2238] [2239] Underfull \hbox (badness 2277) in paragraph at lines 1388--1391 []\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer -ent types of ma-tri-ces. Use [2240] [2241] Underfull \hbox (badness 1097) in paragraph at lines 1560--1563 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "MatrixFactorization" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/sl/10 " dgeMatrix"\T1/ptm/m/n/10 , by class Underfull \hbox (badness 1783) in paragraph at lines 1566--1570 []\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1 /ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend [2242]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Sums}) has been already used, duplicate ignored \relax l.1623 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup licate ignored \relax l.1623 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl icate ignored \relax l.1624 \aliasA{colMeans}{colSums}{colMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i gnored \relax l.1645 \aliasA{rowMeans}{colSums}{rowMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig nored \relax l.1656 \aliasA{rowSums}{colSums}{rowSums} [2243] [2244] [2245] Underfull \hbox (badness 3547) in paragraph at lines 1875--1878 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2246] [2247] [2248] [2249] [2250] Underfull \hbox (badness 1360) in paragraph at lines 2298--2302 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("dgCMatrix",...)\T1/ptm/m/n/10 , more typ-i-cally via [2251] [2252] [2253] [2254] Underfull \hbox (badness 2368) in paragraph at lines 2614--2618 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can tbe stored i n more than one pos-si-ble [2255] [2256] Underfull \hbox (badness 6842) in paragraph at lines 2704--2707 []\T1/zi4/m/sl/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T 1/zi4/m/sl/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/sl/10 ldiMatrix[] [][] \T1/ptm/m/n/10 (with ``su-per-class'' [2257] Underfull \hbox (badness 10000) in paragraph at lines 2991--2995 []\T1/zi4/m/sl/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro up meth-ods re-turn a [2258] [2259] [2260] Underfull \hbox (badness 1173) in paragraph at lines 3201--3203 []\T1/zi4/m/sl/10 signature(x = "dMatrix",digits = "numeric")\T1/ptm/m/n/10 : t his group con-tains [][]\T1/zi4/m/sl/10 round[][][]() \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 3248--3250 [][][]\T1/zi4/m/sl/10 drop0[][][](x,tol=1e-10) \T1/ptm/m/n/10 is some-times pre fer-able to (and more ef-fi-cient than) [2261] [2262] Underfull \hbox (badness 1354) in paragraph at lines 3447--3450 []\T1/ptm/m/n/10 a Ma-trix like \T1/zi4/m/sl/10 x \T1/ptm/m/n/10 but with no ex -plicit ze-ros, i.e., \T1/zi4/m/sl/10 !any(x@x == 0)\T1/ptm/m/n/10 , al-ways in -her-it-ing from [2263] [2264] [2265] [2266] [2267] Underfull \hbox (badness 6188) in paragraph at lines 3857--3860 []\T1/zi4/m/sl/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/sl/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 type = Underfull \hbox (badness 5147) in paragraph at lines 3860--3863 []\T1/zi4/m/sl/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/sl/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 type = [2268] [2269] Underfull \hbox (badness 2318) in paragraph at lines 3974--3978 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C lass \T1/zi4/m/sl/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi 4/m/sl/10 "dMatrix"\T1/ptm/m/n/10 , [2270] [2271] Underfull \hbox (badness 5245) in paragraph at lines 4110--4114 []\T1/zi4/m/sl/10 signature(x = "dtpMatrix",logarithm = "logical")\T1/ptm/m/n/1 0 : the [][]\T1/zi4/m/sl/10 determinant[][][](x) [2272] [2273] [2274] [2275] [2276] [2277] Overfull \hbox (3.77782pt too wide) in paragraph at lines 4532--4532 [] \T1/zi4/m/n/9 readHB(gzcon(url("http://www.cise.ufl.edu/research/sparse/RB/ Boeing/msc00726.tar.gz"))))[] Overfull \hbox (48.77782pt too wide) in paragraph at lines 4535--4535 [] \T1/zi4/m/n/9 readMM(gzcon(url("ftp://math.nist.gov/pub/MatrixMarket2/Harwe ll-Boeing/counterx/jgl009.mtx.gz"))))[] [2278] [2279] Underfull \hbox (badness 1931) in paragraph at lines 4767--4769 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/sl/10 zero.print \T1/ ptm/m/n/10 codes should be aligned, see [2280] [2281] [2282] [2283] [2284] Underfull \hbox (badness 1005) in paragraph at lines 5073--5078 []\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. \T1/zi4/m/sl/10 NA \T1/ptm/m/n/10 means no bor-der is drawn. Underfull \hbox (badness 1655) in paragraph at lines 5073--5078 \T1/ptm/m/n/10 When \T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 as by de-fault, \T1/zi4 /m/sl/10 border.col <-if(lwd < .01) NA else NULL \T1/ptm/m/n/10 is Underfull \hbox (badness 5862) in paragraph at lines 5092--5095 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ]\T1/zi4/m/sl/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use [2285] Overfull \hbox (42.75635pt too wide) in paragraph at lines 5139--5139 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2286] Underfull \hbox (badness 3229) in paragraph at lines 5240--5249 []\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o r \T1/ptm/m/n/10 us-ing \T1/zi4/m/sl/10 drop=FALSE\T1/ptm/m/n/10 ) stays within the Underfull \hbox (badness 10000) in paragraph at lines 5282--5284 []\T1/zi4/m/sl/10 signature(x = "matrix",y = "indMatrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use [2287] Underfull \hbox (badness 4995) in paragraph at lines 5287--5290 []\T1/zi4/m/sl/10 signature(from = "numeric",to = "indMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low Underfull \hbox (badness 10000) in paragraph at lines 5297--5300 []\T1/zi4/m/sl/10 signature(from = "indMatrix",to = "matrix")\T1/ptm/m/n/10 : c o-er-cion to a tra-di-tional [2288] [2289] [2290] [2291] [2292] Underfull \hbox (badness 1014) in paragraph at lines 5674--5677 []\T1/zi4/m/sl/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/sl/10 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/sl/10 M \T1/ptm/m/n/10 is a tri-an-gu-lar ma-trix. Anal-o-gously, [2293] [2294] [2295] [2296] Underfull \hbox (badness 10000) in paragraph at lines 5989--5992 []\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2297] Underfull \hbox (badness 2478) in paragraph at lines 6101--6106 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "lde nseMatrix"\T1/ptm/m/n/10 . Class [2298] Underfull \hbox (badness 10000) in paragraph at lines 6109--6112 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2299] Underfull \hbox (badness 10000) in paragraph at lines 6301--6304 []\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2300] Underfull \hbox (badness 10000) in paragraph at lines 6399--6402 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2301] Underfull \hbox (badness 10000) in paragraph at lines 6474--6477 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2302] Underfull \hbox (badness 2050) in paragraph at lines 6550--6553 []\T1/zi4/m/sl/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth -ods for dif-fer-ent types of ma-tri-ces. Use [2303] [2304] [2305] Underfull \hbox (badness 6268) in paragraph at lines 6756--6759 []\T1/ptm/m/n/10 Note that when the re-sult-ing ma-trix is di-ag-o-nal (``math- e-mat-i-cally''), [2306] Underfull \hbox (badness 6268) in paragraph at lines 6780--6784 []\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1 /ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/sl/10 matrix[][][]\T1/ptm/m/n/1 0 . How-ever, [2307]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det }) has been already used, duplicate ignored \relax l.6873 \aliasA{det}{Matrix-class}{det} Underfull \hbox (badness 1527) in paragraph at lines 6966--6968 []\T1/zi4/m/sl/10 signature(x = "Matrix")\T1/ptm/m/n/10 : sim-ply de-fined as \ T1/zi4/m/sl/10 prod(dim(x)) \T1/ptm/m/n/10 (and hence of mode Underfull \hbox (badness 4846) in paragraph at lines 6971--6974 []\T1/zi4/m/sl/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1 /zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 6976--6979 [2308]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.7049 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.7157 ...A{crossprod}{matrix-products}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.7257 ...tcrossprod}{matrix-products}{tcrossprod} [2309pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod.Rdash.methods}) has be en already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7361 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.tc rossprod.Rdash.methods}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7361 ] [2310] Underfull \hbox (badness 10000) in paragraph at lines 7431--7436 []\T1/zi4/m/sl/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use Underfull \hbox (badness 1448) in paragraph at lines 7431--7436 \T1/zi4/m/sl/10 showMethods("%*%",class="dtrMatrix")\T1/ptm/m/n/10 ): ma-trix m ul-ti-pli-ca-tion. Mul-ti-pli-ca-tion of Underfull \hbox (badness 10000) in paragraph at lines 7440--7442 []\T1/zi4/m/sl/10 signature(x = "CsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/sl/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 10000) in paragraph at lines 7442--7444 []\T1/zi4/m/sl/10 signature(x = "TsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/sl/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 1264) in paragraph at lines 7446--7447 []\T1/zi4/m/sl/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures, see [2311] [2312] Underfull \hbox (badness 1430) in paragraph at lines 7590--7595 []\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/sl/10 "MatrixFactorizatio n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/sl/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1 /zi4/m/sl/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 CHMfactor[][][] \T1/ptm/m/n/10 , and [2313] Underfull \hbox (badness 10000) in paragraph at lines 7661--7664 []\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2314] Underfull \hbox (badness 10000) in paragraph at lines 7713--7715 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 X <-(X + t(X))/2 \T1/ ptm/m/n/10 should be done, af-ter \T1/zi4/m/sl/10 X [2315] [2316] Underfull \vbox (badness 10000) has occurred while \output is active [2317] Underfull \hbox (badness 2478) in paragraph at lines 7917--7922 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "nde nseMatrix"\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 7925--7928 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2318] [2319] Underfull \hbox (badness 5924) in paragraph at lines 8119--8121 []\T1/ptm/m/n/10 fast sim-ple meth-ods [2320]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor m}) has been already used, duplicate ignored \relax l.8159 \HeaderA{norm}{Matrix Norms}{norm} pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor ed \relax l.8159 \HeaderA{norm}{Matrix Norms}{norm} [2321] [2322] Underfull \hbox (badness 10000) in paragraph at lines 8432--8435 []\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2323] Underfull \hbox (badness 10000) in paragraph at lines 8522--8525 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2324] Underfull \hbox (badness 10000) in paragraph at lines 8598--8601 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2325] Underfull \vbox (badness 10000) has occurred while \output is active [2326] Underfull \hbox (badness 10000) in paragraph at lines 8724--8726 []\T1/zi4/m/sl/10 signature(x = "matrix",y = "pMatrix") \T1/ptm/m/n/10 and othe r sig-na-tures (use Underfull \hbox (badness 10000) in paragraph at lines 8729--8732 []\T1/zi4/m/sl/10 signature(from = "numeric",to = "pMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low [2327] [2328] [2329] [2330]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.8961 \aliasA{qr}{qr-methods}{qr} [2331] [2332] [2333] [2334]pdfTeX warning (e xt4): destination with the same identifier (name{Rfn.rcond}) has been already u sed, duplicate ignored \relax l.9257 ... the Reciprocal Condition Number}{rcond} [2335] [2336] [2337] [2338] Underfull \hbox (badness 2351) in paragraph at lines 9561--9569 []\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 ( \OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment, via one di-men-sional Underfull \hbox (badness 1852) in paragraph at lines 9561--9569 \T1/ptm/m/n/10 in-dices, if not \T1/zi4/m/sl/10 symmetric [][]sample.int[][][]( nrow*ncol,nnz)\T1/ptm/m/n/10 , then---if \T1/zi4/m/sl/10 rand.x \T1/ptm/m/n/10 is not \T1/zi4/m/sl/10 NULL\T1/ptm/m/n/10 --- Underfull \hbox (badness 2343) in paragraph at lines 9561--9569 \T1/ptm/m/n/10 gets \T1/zi4/m/sl/10 x <-rand.x(nnz) \T1/ptm/m/n/10 and calls [] []\T1/zi4/m/sl/10 sparseMatrix[][][](i=i,j=j,x=x,..)\T1/ptm/m/n/10 . When \T1/z i4/m/sl/10 rand.x=NULL\T1/ptm/m/n/10 , [2339] [2340] [2341] [2342]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.solve}) has been already used, duplicate ignored \relax l.9834 \aliasA{solve}{solve-methods}{solve} [2343] Underfull \hbox (badness 10000) in paragraph at lines 9997--10004 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list \T1/zi4/m/sl/10 ( sparse = [2344] Underfull \hbox (badness 4403) in paragraph at lines 10058--10061 []\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/sl/10 b\T1/ptm/m/n/10 , in-clud-ing \T1/zi4/m/sl/10 "missing"\T1/ptm/m/n/10 , and Underfull \hbox (badness 10000) in paragraph at lines 10128--10131 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, form a for-mu la and data frame [2345] Underfull \hbox (badness 10000) in paragraph at lines 10164--10167 []\T1/ptm/m/n/10 character string or \T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or (co -er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 10175--10179 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2346] [2347] [2348] [2349] [2350] [2351] [2352] [2353] Underfull \hbox (badness 10000) in paragraph at lines 10764--10772 []\T1/zi4/m/sl/10 signature(from = "factor",to = "sparseMatrix")\T1/ptm/m/n/10 : Co-er-cion of a fac-tor to Underfull \hbox (badness 1112) in paragraph at lines 10764--10772 \T1/zi4/m/sl/10 "sparseMatrix" \T1/ptm/m/n/10 pro-duces the ma-trix of in-di-ca -tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class [2354]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr. Q}) has been already used, duplicate ignored \relax l.10830 \aliasA{qr.Q}{sparseQR-class}{qr.Q} [2355] [2356] Underfull \hbox (badness 5036) in paragraph at lines 11016--11018 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2357] [2358] Underfull \hbox (badness 10000) in paragraph at lines 11223--11226 []\T1/zi4/m/sl/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/ m/sl/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list [2359] Underfull \vbox (badness 10000) has occurred while \output is active [2360] [2361] [2362] Underfull \hbox (badness 10000) in paragraph at lines 11492--11497 []\T1/ptm/m/n/10 The va-lid-ity checks do not re-quire a sym-met-ric \T1/zi4/m/ sl/10 Dimnames \T1/ptm/m/n/10 slot, so it can be [2363] Underfull \hbox (badness 2057) in paragraph at lines 11572--11574 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., [2364] [2365] Underfull \hbox (badness 1831) in paragraph at lines 11747--11753 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1 /zi4/m/sl/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 crossprod \T1/ptm/m/n/10 ar e de-fined [2366] Underfull \hbox (badness 1902) in paragraph at lines 11782--11786 []\T1/ptm/m/n/10 Note that \T1/zi4/m/sl/10 new(.)\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 spMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/sl/10 sparseMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/sl/10 "dgTMatrix" \T1/ptm/m/n/10 (a nd other [2367] [2368] [2369] [2370] [2371] [2372] Underfull \hbox (badness 6910) in paragraph at lines 12295--12297 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2373] [2374] [2375]) (./boot-pkg.tex [2376] Chapter 18. [2377] [2378] [2379] [2380] [2381] [2382] [2383] [2384] [2385] [2386] Underfull \hbox (badness 1297) in paragraph at lines 799--809 []\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce sses, the de-fault be-haviour [2387] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2388] Underfull \vbox (badness 10000) has occurred while \output is active [2389] [2390] Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 []\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i n-ter- Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 \T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues Underfull \hbox (badness 1859) in paragraph at lines 1068--1072 \T1/zi4/m/sl/10 c("norm","basic","stud","perc","bca") \T1/ptm/m/n/10 or sim-ply \T1/zi4/m/sl/10 "all" \T1/ptm/m/n/10 which will [2391] Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2392] [2393] [2394] [2395] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2396] [2397] [2398] [2399] [2400] [2401] Underfull \hbox (badness 1005) in paragraph at lines 1800--1807 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/sl/10 " ordinary" \T1/ptm/m/n/10 (case re-sam-pling), [2402] [2403] Underfull \vbox (badness 10000) has occurred while \output is active [2404] Underfull \hbox (badness 7379) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2405] [2406] [2407] [2408] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2409] Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2410] [2411] Underfull \hbox (badness 2970) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/s l/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/sl/10 n \T1/ptm/m/n/10 is t he sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if \T1/zi4/m/sl/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/sl /10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/sl/10 1/n \T1/ptm/m/n /10 is used. This is mul-ti-plied by [2412] [2413] [2414] [2415] [2416] [2417] [2418] [2419] [2420] [2421] [2422] [2423] [2424] [2425] [2426] [2427] [2428] [2429] [2430] [2431] [2432] [2433] [2434] Underfull \hbox (badness 10000) in paragraph at lines 4190--4192 []\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault is [2435] [2436] [2437] [2438] [2439] [2440] [2441] [2442] [2443] [2444] [2445] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2446] [2447] [2448] [2449] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2450] [2451] [2452] [2453] [2454] [2455] [2456] [2457] [2458] [2459] [2460] Underfull \hbox (badness 4954) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/sl/10 "sa ddle.distn"\T1/ptm/m/n/10 . See the help file for [2461] [2462] [2463] [2464] [2465] [2466] [2467] [2468] [2469] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2470] [2471] [2472] [2473] [2474] [2475] [2476] [2477] [2478] [2479]) (./class-pkg.tex [2480] Chapter 19. [2481] [2482] [2483] [2484] [2485] [2486] [2487] [2488] [2489] [2490] [2491] [2492] [2493] [2494] [2495] [2496]) (./cluster-pkg.tex Chapter 20. [2497] [2498] [2499] [2500] [2501] Underfull \vbox (badness 7777) has occurred while \output is active [2502] [2503] [2504] [2505] [2506] Underfull \hbox (badness 4144) in paragraph at lines 688--691 []\T1/ptm/m/n/10 Setting this to \T1/zi4/m/sl/10 FALSE \T1/ptm/m/n/10 saves mem -ory (and hence time), but dis-ables [2507] Underfull \hbox (badness 1412) in paragraph at lines 771--776 []\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][]\T1/zi4/m/sl/10 agnes[][][]\T1/ ptm/m/n/10 ), orig-i-nally. Met-ric \T1/zi4/m/sl/10 "jaccard"\T1/ptm/m/n/10 : K amil Ko-zlowski [2508] [2509] Underfull \hbox (badness 10000) in paragraph at lines 864--866 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2510] [2511] Underfull \hbox (badness 10000) in paragraph at lines 975--977 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 989--993 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2512] [2513] [2514] Underfull \hbox (badness 6110) in paragraph at lines 1190--1194 []\T1/ptm/m/n/10 when \T1/zi4/m/sl/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/ m/sl/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/sl/10 data \T1/ptm/m/n/10 com-po-ne nt, e.g., for [2515] [2516] [2517] Underfull \hbox (badness 10000) in paragraph at lines 1459--1462 [2518] [2519] Underfull \hbox (badness 2503) in paragraph at lines 1571--1574 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "hclust" \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2520] [2521] [2522] [2523] [2524] [2525] [2526] [2527] Underfull \hbox (badness 10000) in paragraph at lines 2162--2165 Underfull \hbox (badness 10000) in paragraph at lines 2176--2182 [][][]\T1/zi4/m/sl/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the [][]\T1/zi4/m/sl/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/sl/10 ell ipsoid \T1/ptm/m/n/10 ob-jects. [2528] [2529] [2530] [2531] Underfull \hbox (badness 6675) in paragraph at lines 2411--2413 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2532] [2533] [2534] [2535] [2536] [2537] [2538] Underfull \hbox (badness 2980) in paragraph at lines 2902--2906 [][][]\T1/zi4/m/sl/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc es; [][]\T1/zi4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cl ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 daisy[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [2539] [2540] [2541] [2542] [2543] Underfull \hbox (badness 1142) in paragraph at lines 3243--3246 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2544] [2545] Underfull \hbox (badness 1142) in paragraph at lines 3362--3365 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2546] [2547] [2548] [2549] Underfull \hbox (badness 2582) in paragraph at lines 3585--3590 [][][]\T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clusplot.default [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi 4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clara[][][]\T1/p tm/m/n/10 , [2550] Underfull \hbox (badness 3209) in paragraph at lines 3647--3652 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi 4/m/sl/10 plot([][]as.hclust[][][](x),...)\T1/ptm/m/n/10 , which Underfull \hbox (badness 8019) in paragraph at lines 3647--3652 \T1/ptm/m/n/10 dis-patches to [][]\T1/zi4/m/sl/10 plot.hclust[][][](..)\T1/ptm/ m/n/10 . If more flex-i-ble plots are needed, con-sider \T1/zi4/m/sl/10 xx [2551] [2552] [2553] [2554] Underfull \hbox (badness 10000) in paragraph at lines 3939--3941 []\T1/ptm/m/n/10 a \T1/zi4/m/sl/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T 1/zi4/m/sl/10 summary.dissimilarity \T1/ptm/m/n/10 one for [2555] [2556] [2557] [2558] Underfull \hbox (badness 2626) in paragraph at lines 4163--4168 []\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/sl/10 barplot[][][]()\T1/ptm/m/ n/10 ; note that the de-fault used to be \T1/zi4/m/sl/10 col = [2559] Underfull \hbox (badness 1383) in paragraph at lines 4241--4246 []\T1/ptm/m/n/10 While \T1/zi4/m/sl/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m /it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/sl/10 partition[][][] \T 1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2560] [2561] [2562] [2563] [2564] [2565] [2566] Underfull \hbox (badness 10000) in paragraph at lines 4684--4686 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/sl/10 xclara.dat\T1/ptm/m/n/10 ' in side [2567] [2568]) (./codetools-pkg.tex Chapter 21. [2569] [2570] [2571] [2572] [2573]) (./foreign-pkg.tex [2574] Chapter 22. [2575] [2576] [2577] [2578] [2579] [2580] [2581] [2582] Underfull \hbox (badness 10000) in paragraph at lines 506--515 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer- Underfull \hbox (badness 10000) in paragraph at lines 506--515 \T1/ptm/m/n/10 ent lev-els. For \T1/zi4/m/sl/10 "append" \T1/ptm/m/n/10 (the de -fault), the first orig-i-nal value Underfull \hbox (badness 10000) in paragraph at lines 506--515 \T1/ptm/m/n/10 la-bel is kept while fur-ther du-pli-cated la-bels are re-named to [2583] Overfull \hbox (6.73795pt too wide) in paragraph at lines 625--625 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2584] [2585] [2586] Underfull \hbox (badness 10000) in paragraph at lines 813--814 [2587] [2588] [2589] [2590] [2591] [2592] [2593] Underfull \hbox (badness 10000) in paragraph at lines 1269--1275 []\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/sl/10 foreign :::writeForeignStata\T1/ptm/m/n/10 , [2594] [2595]) (./lattice-pkg.tex [2596] Chapter 23. [2597] [2598] [2599] [2600] [2601] [2602] [2603] [2604] [2605] [2606] [2607] [2608] [2609] [2610] [2611] [2612] Underfull \hbox (badness 1062) in paragraph at lines 1398--1402 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2613] Underfull \vbox (badness 4416) has occurred while \output is active [2614] Underfull \hbox (badness 1803) in paragraph at lines 1566--1583 [][][]\T1/zi4/m/sl/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack- age, as well as [][]\T1/zi4/m/sl/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 print.trellis[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1583 [][]\T1/zi4/m/sl/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 p anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.loess[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/sl/10 strip.default[][][]\T1/ptm/m/n/10 , [2615] [2616] [2617] Underfull \hbox (badness 3009) in paragraph at lines 1725--1727 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/sl/10 xyplot[][ ][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1755--1759 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2618] [2619] [2620] [2621] [2622] Underfull \hbox (badness 10000) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 When \T1/zi4/m/sl/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, the value of [2623] [2624] [2625] [2626] [2627] [2628] [2629] [2630] [2631] [2632] Underfull \hbox (badness 2781) in paragraph at lines 2848--2850 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/sl/10 col. regions \T1/ptm/m/n/10 ar-gu-ment in [2633] Underfull \hbox (badness 2486) in paragraph at lines 2959--2963 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2634] [2635] [2636] [2637] [2638] [2639] [2640]pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.parallel}) has been already used, duplic ate ignored \relax l.3431 \aliasA{parallel}{B\_08\_splom}{parallel} [2641] [2642] [2643] [2644] [2645] [2646] [2647] Underfull \hbox (badness 5696) in paragraph at lines 3922--3926 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 10000) in paragraph at lines 3922--3926 \T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/sl/10 lattice.options(default.theme = "col.whitebg")\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3922--3926 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2648] [2649] Underfull \hbox (badness 1173) in paragraph at lines 4061--4065 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4088--4090 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2650] [2651] [2652] Underfull \hbox (badness 3492) in paragraph at lines 4284--4294 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/sl/10 col \T1/ptm/m/n/10 is used for com-po-nents \T1/zi4/m/sl/10 "plot.symbol"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4309--4312 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 plo t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 plot.polygon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4312--4314 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 p lot.polygon \T1/ptm/m/n/10 and [2653] [2654] [2655] [2656] [2657] [2658] [2659] [2660] [2661] [2662] Underfull \hbox (badness 6157) in paragraph at lines 5035--5038 []\T1/zi4/m/sl/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles via rect-an-gles. \T1/zi4/m/sl/10 print.shingle \T1/ptm/m/n/10 and [2663] [2664] [2665] [2666] [2667] [2668] Underfull \hbox (badness 10000) in paragraph at lines 5486--5489 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5486--5489 \T1/zi4/m/sl/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le ft of pan-els us-ing [2669] [2670] [2671] [2672] [2673] Underfull \hbox (badness 4805) in paragraph at lines 5846--5850 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 5857--5864 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t ra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 5857--5864 \T1/zi4/m/sl/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/sl/10 panel.identi fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 5857--5864 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z i4/m/sl/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 5857--5864 \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar e used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 5857--5864 [][]\T1/zi4/m/sl/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th e cho-sen view-port if so re-quested. [2674] [2675] [2676] [2677] Underfull \hbox (badness 4242) in paragraph at lines 6157--6162 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6157--6162 \T1/ptm/m/n/10 ter \T1/zi4/m/sl/10 plot.polygon \T1/ptm/m/n/10 is used if there is no group-ing vari-able, oth-er-wise [2678] [2679] Underfull \hbox (badness 2310) in paragraph at lines 6273--6278 []\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/sl/10 x \T1/ptm/m/n/ 10 for ev-ery level of \T1/zi4/m/sl/10 y \T1/ptm/m/n/10 (or the other way round if [2680] [2681] [2682] [2683] [2684] [2685] [2686] [2687] [2688] [2689] [2690] Underfull \hbox (badness 3168) in paragraph at lines 7055--7059 \T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. U se [2691] [2692] [2693] [2694] Underfull \hbox (badness 2012) in paragraph at lines 7326--7329 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2695] [2696] Underfull \hbox (badness 3333) in paragraph at lines 7498--7500 []\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/sl/10 plot.symbol \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 plot.line \T1/ptm/m/n/10 us-ing [2697] [2698] [2699] Underfull \vbox (badness 10000) has occurred while \output is active [2700] [2701] [2702] Underfull \hbox (badness 1436) in paragraph at lines 7912--7918 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2703] [2704] [2705] [2706] [2707] [2708] [2709] [2710] Underfull \hbox (badness 10000) in paragraph at lines 8470--8473 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/sl/10 panel.superp ose \T1/ptm/m/n/10 from [2711] Underfull \hbox (badness 1092) in paragraph at lines 8516--8518 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/sl/10 \T1/ptm/m/n/10 (\T1/zi4/m/sl/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally con- [2712] [2713] Underfull \hbox (badness 3895) in paragraph at lines 8677--8680 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/sl/10 type \T 1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2714] Underfull \hbox (badness 1515) in paragraph at lines 8753--8757 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2715] [2716] Underfull \hbox (badness 6316) in paragraph at lines 8859--8864 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in Underfull \hbox (badness 5908) in paragraph at lines 8876--8879 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/sl/10 xscale.c omponents.default \T1/ptm/m/n/10 and [2717] [2718] [2719] [2720] Overfull \hbox (1.94879pt too wide) in paragraph at lines 9164--9168 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4 /m/sl/10 left,right,left.name,right.name,condition [2721] [2722] [2723] [2724] [2725] [2726] [2727] Underfull \hbox (badness 2310) in paragraph at lines 9622--9626 []\T1/ptm/m/n/10 Factor with lev-els \T1/zi4/m/sl/10 "Svansota"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "No. 462"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Manchuria"\T1/ptm/m /n/10 , \T1/zi4/m/sl/10 "No. 475"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Velvet"\T1/p tm/m/n/10 , Underfull \hbox (badness 3701) in paragraph at lines 9627--9630 []\T1/ptm/m/n/10 Factor with 6 lev-els: \T1/zi4/m/sl/10 "Grand Rapids"\T1/ptm/m /n/10 , \T1/zi4/m/sl/10 "Duluth"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "University Fa rm"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Morris"\T1/ptm/m/n/10 , [2728] [2729] [2730]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.9853 \aliasA{melanoma}{H\_melanoma}{melanoma} [2731] [2732] [2733] Underfull \hbox (badness 4144) in paragraph at lines 10077--10080 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10077--10080 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/sl /10 https : / / ruralhealth . und . edu / projects / [2734] [2735]) (./mgcv-pkg.tex [2736] Chapter 24. [2737] [2738] [2739] Underfull \hbox (badness 1142) in paragraph at lines 171--175 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 196--201 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2740] [2741] [2742] Underfull \vbox (badness 5345) has occurred while \output is active [2743] Underfull \hbox (badness 10000) in paragraph at lines 365--372 [][][]\T1/zi4/m/sl/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 m gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gamObject[][][]\T1/ptm/m/ n/10 , [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 smooth.terms[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 365--372 [][]\T1/zi4/m/sl/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][] [][]predict.gam[][] []\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z i4/m/sl/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gam.side[][][] \T1/ptm/m/n/10 , [2744] [2745] [2746] [2747] [2748] [2749] Underfull \hbox (badness 2205) in paragraph at lines 677--678 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-i ng evi-ron-ment vari-able [2750] [2751] Underfull \hbox (badness 1158) in paragraph at lines 787--789 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2752] Underfull \hbox (badness 1259) in paragraph at lines 850--851 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2753] Underfull \vbox (badness 10000) has occurred while \output is active [2754] [2755] [2756] [2757] [2758] [2759] [2760] [2761] [2762] [2763] [2764] [2765] [2766] [2767] [2768] [2769] [2770] [2771] [2772] [2773] [2774] [2775] [2776] Underfull \hbox (badness 1142) in paragraph at lines 2273--2277 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2777] Underfull \hbox (badness 1043) in paragraph at lines 2299--2304 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2778] [2779] [2780] [2781] [2782] Underfull \vbox (badness 10000) has occurred while \output is active [2783] Underfull \vbox (badness 10000) has occurred while \output is active [2784] Underfull \vbox (badness 10000) has occurred while \output is active [2785] [2786] [2787] [2788] [2789] [2790] [2791] [2792] [2793] [2794] [2795] [2796] [2797] [2798] Underfull \hbox (badness 10000) in paragraph at lines 3620--3624 []\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/sl/10 gam \T1/ptm/m/ n/10 mod-els us-ing \T1/zi4/m/sl/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see [2799] [2800] Underfull \vbox (badness 10000) has occurred while \output is active [2801] [2802] [2803] Underfull \hbox (badness 1184) in paragraph at lines 3906--3910 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2804] [2805] [2806] [2807] [2808] [2809] [2810] [2811] [2812] [2813] [2814] [2815] Underfull \hbox (badness 1142) in paragraph at lines 4628--4632 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2816] Underfull \hbox (badness 1231) in paragraph at lines 4732--4734 []\T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since it uses PQL. It is bet-ter to use \T1/zi4/m/sl/10 gam \T1/ptm/m/n/10 with [2817] [2818] [2819] Underfull \vbox (badness 10000) has occurred while \output is active [2820] [2821] [2822] [2823] Underfull \hbox (badness 2181) in paragraph at lines 5176--5177 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2824] [2825] [2826] [2827] [2828] [2829] [2830] Underfull \hbox (badness 10000) in paragraph at lines 5565--5566 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by \T1/zi4/m/sl/10 gam(... ,fit=FALSE) \T1/ptm/m/n/10 or [2831] [2832] [2833] [2834] [2835] [2836] [2837] [2838] [2839] Underfull \hbox (badness 1142) in paragraph at lines 6068--6072 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2840] [2841] [2842] [2843] [2844] [2845] [2846] [2847] Underfull \hbox (badness 1087) in paragraph at lines 6438--6439 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 rho \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 thet a \T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this cas e, and if [2848] [2849] Underfull \vbox (badness 10000) has occurred while \output is active [2850] Underfull \vbox (badness 10000) has occurred while \output is active [2851] [2852] [2853] [2854] [2855] [2856] [2857] [2858] [2859] [2860] [2861] [2862] Underfull \hbox (badness 1242) in paragraph at lines 7384--7385 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [2863] [2864] [2865] [2866] Underfull \vbox (badness 10000) has occurred while \output is active [2867] [2868] [2869] [2870] [2871] [2872] [2873] [2874] Underfull \hbox (badness 6001) in paragraph at lines 8024--8026 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/sl/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [2875] [2876] [2877] [2878] [2879] [2880] [2881] [2882] [2883] [2884] Underfull \vbox (badness 10000) has occurred while \output is active [2885] [2886] Underfull \hbox (badness 1038) in paragraph at lines 8773--8776 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/sl/10 Dim. pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ sl/10 corMatrix.pdIdnot\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 8773--8776 \T1/zi4/m/sl/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdConstruct.pdId not\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ sl/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 , [2887] Underfull \hbox (badness 10000) in paragraph at lines 8829--8832 []\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/sl/10 pdTens\T1/ptm/m/n/10 , \T1/z i4/m/sl/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdTens\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdMatrix.pdTens\T1/ptm/m/n/10 , [2888] [2889] [2890] [2891] [2892] [2893] [2894] [2895] [2896] [2897] [2898] Underfull \hbox (badness 1852) in paragraph at lines 9500--9503 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and [2899] [2900] Underfull \hbox (badness 1852) in paragraph at lines 9666--9669 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and [2901] [2902] Underfull \vbox (badness 10000) has occurred while \output is active [2903] Underfull \vbox (badness 10000) has occurred while \output is active [2904] Underfull \hbox (badness 1205) in paragraph at lines 9898--9900 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 9898--9900 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 9904--9909 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2905] [2906] Underfull \hbox (badness 1205) in paragraph at lines 9988--9990 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 9988--9990 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [2907] [2908] [2909] Underfull \hbox (badness 1253) in paragraph at lines 10187--10189 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [2910] [2911] [2912] Underfull \hbox (badness 4792) in paragraph at lines 10373--10376 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/sl/ 10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m /n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 10373--10376 \T1/ptm/m/n/10 see [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [2913] [2914] Underfull \hbox (badness 10000) in paragraph at lines 10480--10483 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/sl/1 0 "deviance"\T1/ptm/m/n/10 , [2915] [2916] [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] Underfull \vbox (badness 10000) has occurred while \output is active [2925] Underfull \hbox (badness 3861) in paragraph at lines 11109--11112 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [2926] [2927] Underfull \hbox (badness 1320) in paragraph at lines 11222--11227 \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 b.orig = D*b.repara \T1/ptm/m/n/10 (where \T 1/zi4/m/sl/10 b.orig \T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec-tor). If ma- [2928] Underfull \hbox (badness 1975) in paragraph at lines 11328--11333 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2929] [2930] Underfull \hbox (badness 1762) in paragraph at lines 11417--11429 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/sl/10 tprs[][][]\T 1/ptm/m/n/10 ); \T1/zi4/m/sl/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr es-sion splines with [2931] [2932] [2933] Underfull \hbox (badness 7667) in paragraph at lines 11629--11635 [][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one or two vari-ables, spec-i-fied via terms like [2934] Underfull \hbox (badness 10000) in paragraph at lines 11670--11671 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2935] [2936] [2937] [2938] Underfull \vbox (badness 10000) has occurred while \output is active [2939] Underfull \hbox (badness 10000) in paragraph at lines 11946--11948 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2940] [2941] Underfull \hbox (badness 10000) in paragraph at lines 12074--12075 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2942] [2943] [2944] Underfull \hbox (badness 1436) in paragraph at lines 12212--12219 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) \T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 only al-lows one [2945] [2946] Underfull \hbox (badness 10000) in paragraph at lines 12306--12307 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2947] [2948] [2949] [2950] [2951] [2952] [2953] [2954] [2955] [2956] Underfull \hbox (badness 10000) in paragraph at lines 12894--12900 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 1292) in paragraph at lines 12894--12900 \T1/zi4/m/sl/10 s(...,bs="so",xt=list(bnd=bnd,...)) \T1/ptm/m/n/10 term in a \T 1/zi4/m/sl/10 gam \T1/ptm/m/n/10 for-mula. Note [2957] [2958] [2959] Underfull \vbox (badness 10000) has occurred while \output is active [2960] Underfull \vbox (badness 10000) has occurred while \output is active [2961] [2962] Underfull \hbox (badness 10000) in paragraph at lines 13237--13238 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2963] [2964] [2965] [2966] Underfull \hbox (badness 3895) in paragraph at lines 13498--13501 [][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any num-ber of vari-ables, spec-i-fied via terms like [2967] Underfull \hbox (badness 10000) in paragraph at lines 13543--13545 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2968] [2969] [2970] [2971] Underfull \hbox (badness 1371) in paragraph at lines 13760--13766 []\T1/zi4/m/sl/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive smooths are avail-able (see Underfull \hbox (badness 10000) in paragraph at lines 13800--13804 [][][]\T1/zi4/m/sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/sl/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/ zi4/m/sl/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cubic.regre ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 p.spline[][][]\T1/ptm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 13800--13804 [][]\T1/zi4/m/sl/10 mrf[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 soap[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Spherical.Spline[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 user.de fined.smooth[][][]\T1/ptm/m/n/10 , Overfull \hbox (46.8009pt too wide) in paragraph at lines 13800--13804 [][]\T1/zi4/m/sl/10 smooth.construct.re.smooth.spec[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/sl/10 smooth.construct.gp.smooth.spec[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4 /m/sl/10 factor.smooth.interaction[][][] [2972] [2973] [2974] [2975] Underfull \hbox (badness 2326) in paragraph at lines 14005--14012 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][]\T1/zi4/m/sl/10 smooth.construct[][][] \T1/ptm/m/n/10 and [2976] Underfull \hbox (badness 2158) in paragraph at lines 14090--14090 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [2977] [2978] [2979] [2980] [2981] [2982] [2983] [2984] [2985] [2986] [2987] Underfull \vbox (badness 10000) has occurred while \output is active [2988] [2989] [2990] [2991] [2992] [2993] [2994] [2995] [2996] [2997] [2998] [2999] [3000] [3001] [3002] [3003] Underfull \hbox (badness 1796) in paragraph at lines 15741--15744 []\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/sl/10 persp[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/ sl/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar [3004] [3005] [3006] [3007] [3008] [3009] [3010] [3011]) (./nlme-pkg.tex [3012] Chapter 25. [3013] [3014] [3015] [3016] [3017] [3018] [3019] [3020] [3021] [3022] [3023] [3024] [3025] [3026] [3027] [3028] [3029] [3030] [3031] [3032] [3033] [3034] [3035] [3036] [3037] [3038] [3039] [3040] [3041] [3042] Underfull \hbox (badness 2875) in paragraph at lines 1994--2000 []\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat- ing a co-vari-ate Underfull \hbox (badness 1466) in paragraph at lines 1994--2000 \T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/sl/10 displayLevel \T1/ptm/m/n/1 0 group-ing fac-tor. If equal to \T1/zi4/m/sl/10 TRUE\T1/ptm/m/n/10 , [3043] [3044] [3045] [3046] Underfull \hbox (badness 10000) in paragraph at lines 2256--2262 [][][]\T1/zi4/m/sl/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corARMA [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/sl/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initi alize.corStruct[][][]\T1/ptm/m/n/10 , [3047] [3048] [3049] [3050] [3051] [3052] [3053] [3054] [3055] [3056] [3057] [3058] [3059] [3060] [3061] [3062] [3063] [3064] [3065] [3066] [3067] [3068] [3069] [3070] [3071] [3072] [3073] [3074] [3075] [3076] [3077] [3078] [3079] Underfull \hbox (badness 1067) in paragraph at lines 4414--4419 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3080] [3081] [3082] [3083] [3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] Underfull \hbox (badness 10000) in paragraph at lines 5160--5164 [][][]\T1/zi4/m/sl/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/ m/sl/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getCo variate.varFunc[][][]\T1/ptm/m/n/10 , [3092] [3093] [3094] [3095] [3096] [3097] [3098] Underfull \hbox (badness 10000) in paragraph at lines 5592--5595 [][][]\T1/zi4/m/sl/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.gls[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.lmList[][][]\T1/ptm/m/n/10 , [3099] [3100] [3101] [3102] [3103] [3104] [3105] Underfull \hbox (badness 10000) in paragraph at lines 5973--5978 [][][]\T1/zi4/m/sl/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ sl/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGrou psFormula.lme[][][]\T1/ptm/m/n/10 , [3106] [3107] [3108] [3109] Underfull \hbox (badness 1490) in paragraph at lines 6243--6254 [][][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsC ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsObject[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot. gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 qqnorm.gls[][][]\T1/ptm/m/n/10 , [3110] Underfull \hbox (badness 10000) in paragraph at lines 6307--6309 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3111] [3112] [3113] [3114] [3115] [3116] Underfull \hbox (badness 10000) in paragraph at lines 6721--6723 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3117] [3118] [3119] [3120] Underfull \hbox (badness 10000) in paragraph at lines 6994--7001 [][][]\T1/zi4/m/sl/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gapply[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nffGroupedData [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nfnGroupedData[][][]\T1/ptm/m/n /10 , [3121] [3122] [3123] [3124] Underfull \hbox (badness 10000) in paragraph at lines 7254--7259 [][][]\T1/zi4/m/sl/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ sl/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initialize .glsStruct[][][]\T1/ptm/m/n/10 , [3125] [3126] [3127] [3128] [3129] [3130] [3131] [3132] [3133] [3134] [3135] [3136] [3137] [3138] [3139] [3140] [3141] [3142] [3143] Underfull \hbox (badness 10000) in paragraph at lines 8521--8523 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3144]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sig ma}) has been already used, duplicate ignored \relax l.8572 \aliasA{sigma}{lmeObject}{sigma} [3145] [3146] [3147] [3148] Underfull \hbox (badness 10000) in paragraph at lines 8802--8809 [][][]\T1/zi4/m/sl/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 lme.lmList[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/sl/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.lmLi st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 residuals.lmList[][][]\T1/ptm/m/n/ 10 , [3149] [3150] [3151] [3152] [3153] [3154] [3155] [3156] Underfull \hbox (badness 10000) in paragraph at lines 9324--9331 [][][]\T1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 gls[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik .lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.lmList[][][]\T1/ptm /m/n/10 , [3157] [3158] [3159] [3160] [3161]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9686 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9686 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3162] [3163] [3164] [3165] [3166] [3167] [3168] [3169] [3170] [3171] [3172] [3173] Underfull \hbox (badness 1596) in paragraph at lines 10459--10485 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3174] [3175] Underfull \hbox (badness 1490) in paragraph at lines 10597--10603 [][][]\T1/zi4/m/sl/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlmeObject[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/sl/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pdClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 reStruct[][][]\T1/ptm/m/n/10 , [3176] [3177] [3178] [3179] Underfull \hbox (badness 10000) in paragraph at lines 10838--10840 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3180] [3181] [3182] [3183] [3184] [3185] [3186] [3187] [3188] [3189] [3190] [3191] [3192] [3193] [3194] [3195] [3196] [3197] [3198] [3199] [3200] [3201] [3202] [3203] [3204] [3205] [3206] [3207] [3208] [3209] [3210] [3211] [3212] [3213] [3214] [3215] [3216] [3217] [3218] [3219] [3220] [3221] Underfull \hbox (badness 1286) in paragraph at lines 13734--13741 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/sl /10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/sl/10 inner \T1/ptm/m/n/10 or [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] Underfull \hbox (badness 1215) in paragraph at lines 14280--14282 []\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis. De-faults to [3230] [3231] [3232] [3233] [3234] [3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.random.effects}) has been already used, duplicate ignored \relax l.15177 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15177 ...Extract Random Effects}{random.effects} [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] [3252] [3253] Underfull \hbox (badness 1067) in paragraph at lines 15888--15893 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3254] [3255] [3256] [3257] Underfull \hbox (badness 1448) in paragraph at lines 16131--16140 \T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/sl/10 "response" \T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3258] [3259] [3260] [3261] [3262] [3263] [3264] [3265] [3266] [3267] Underfull \hbox (badness 1728) in paragraph at lines 16836--16839 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3268] [3269] [3270] [3271] [3272] Underfull \hbox (badness 8056) in paragraph at lines 17171--17180 \T1/zi4/m/sl/10 Symmetry" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdCompSymm\T1/ptm/ m/n/10 , \T1/zi4/m/sl/10 "Diagonal" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdDiag\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Multiple of Underfull \hbox (badness 10000) in paragraph at lines 17171--17180 \T1/zi4/m/sl/10 an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdIdent\T1/ptm/ m/n/10 , \T1/zi4/m/sl/10 "General Positive-Definite,Natural Underfull \hbox (badness 5756) in paragraph at lines 17171--17180 \T1/zi4/m/sl/10 Parametrization" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdNatural\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 "General Positive-Definite" \T1/ptm/m/n/10 for [3273] Underfull \hbox (badness 2913) in paragraph at lines 17235--17243 \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 varComb\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Con stant plus power of covariate" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 varConstPower \T1/ptm/m/n/10 , [3274] [3275] [3276] [3277] [3278] [3279] [3280] [3281] [3282] [3283] [3284] Underfull \hbox (badness 10000) in paragraph at lines 18017--18027 [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corLin[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corRatio[][][]\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 18017--18027 [][]\T1/zi4/m/sl/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl /10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.defa ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.gls[][][]\T1/ptm/m/n/10 , [3285] [3286] [3287] [3288] [3289] Underfull \hbox (badness 5036) in paragraph at lines 18341--18350 [][][]\T1/zi4/m/sl/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Vari ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.default[][][]\T1/ptm/ m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/sl/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [3290] [3291] [3292] [3293] [3294] [3295] [3296] [3297] [3298] [3299] [3300] [3301] [3302]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.multinom.1}) has been already used, du plicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3303] Underfull \hbox (badness 1117) in paragraph at lines 78--87 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/sl/10 response ~ [3304] [3305] [3306] [3307] [3308] [3309] [3310]) (./rpart-pkg.tex Chapter 27. 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Myelogenous Leukemia survival data}{aml} [3365] [3366] [3367] [3368] [3369] Underfull \vbox (badness 10000) has occurred while \output is active [3370] [3371] [3372] [3373] [3374] [3375] Underfull \hbox (badness 1097) in paragraph at lines 975--977 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. [3376] [3377] [3378]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) has been already used, duplicate ignored \relax l.1178 ...erapy for Stage B/C colon cancer}{colon} Underfull \vbox (badness 2698) has occurred while \output is active [3379] [3380] [3381] [3382] [3383] [3384] [3385] [3386] [3387] [3388] [3389] [3390] [3391] [3392] [3393] [3394] [3395] [3396] [3397] [3398] [3399] [3400] [3401] [3402] [3403] [3404] Underfull \hbox (badness 1389) in paragraph at lines 3055--3057 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3405] [3406] [3407] [3408] Overfull \hbox (467.89665pt too wide) in alignment at lines 3334--3334 [] [] [3409] [3410] [3411] [3412] [3413] [3414] [3415] [3416] [3417] [3418] [3419] [3420] Underfull \vbox (badness 10000) has occurred while \output is active [3421] [3422] [3423] [3424] [3425] [3426] [3427] [3428] [3429] [3430] [3431] Underfull \hbox (badness 5274) in paragraph at lines 4839--4841 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "summary.survfit"\T1/ptm/m /n/10 , which is the re-sult of the [3432] [3433] [3434] [3435] [3436] [3437] [3438] [3439] [3440] [3441] [3442] Underfull \vbox (badness 2126) has occurred while \output is active [3443] [3444] [3445] Underfull \hbox (badness 1281) in paragraph at lines 5866--5869 []\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/sl/10 "response "\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "d fbeta"\T1/ptm/m/n/10 , [3446] [3447] [3448] [3449] [3450]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.solder}) has been already used, duplicate ignored \relax l.6172 ...ata from a soldering experiment}{solder} [3451] [3452] [3453] [3454] [3455] [3456] [3457] [3458] [3459] [3460] [3461] [3462] [3463] [3464] [3465] [3466] [3467] Underfull \hbox (badness 10000) in paragraph at lines 7435--7444 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the form [3468] [3469] Underfull \hbox (badness 1038) in paragraph at lines 7591--7597 \T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d icted sur-vival [3470] [3471] [3472] [3473] [3474] Underfull \hbox (badness 10000) in paragraph at lines 7954--7959 [][][]\T1/zi4/m/sl/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 survfit.object[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/sl/10 plot.survfit[][][]\T1/ptm/m/n/10 , [3475] [3476] [3477] [3478] Underfull \hbox (badness 1389) in paragraph at lines 8235--8245 []\T1/ptm/m/n/10 One of \T1/zi4/m/sl/10 "none"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "plain"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "log" \T1/ptm/m/n/10 (the de-fault), \T 1/zi4/m/sl/10 "log-log" \T1/ptm/m/n/10 or [3479] [3480] [3481] [3482] [3483] [3484] [3485] [3486] Underfull \hbox (badness 1354) in paragraph at lines 8817--8821 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th e time range [3487] [3488] [3489] [3490] Overfull \vbox (11.56584pt too high) has occurred while \output is active [3491] [3492] [3493] [3494] [3495] [3496] [3497] [3498] [3499] [3500] [3501] [3502] [3503] [3504] [3505] [3506] [3507] [3508]) No file fullrefman.ind. (./fullrefman.aux) Package rerunfilecheck Warning: File `fullrefman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. 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/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texmf-dist/fonts/enc/dvips/incons olata/i4-t1-0.enc} Output written on fullrefman.pdf (3511 pages, 9042620 bytes). Transcript written on fullrefman.log. This is makeindex, version 2.15 [TeX Live 2019] (kpathsea + Thai support). Scanning input file fullrefman.idx............................done (24259 entries accepted, 76 rejected). Sorting entries..........................................................................................................................................................................................................................................................................done (394361 comparisons). Generating output file fullrefman.ind..........................done (25180 lines written, 108 warnings). Output written in fullrefman.ind. Transcript written in fullrefman.ilg. This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2018-12-01> (/usr/share/texmf-dist/tex/latex/base/book.cls Document Class: book 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texmf-dist/tex/latex/url/url.sty) (/usr/share/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texmf-dist/tex/latex/base/t1enc.def)) (/usr/share/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texmf-dist/tex/latex/inconsolata/zi4.sty `inconsolata-zi4' v1.112, 2017/01/04 Text macros for Inconsolata (msharpe) (/usr/share/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/share/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/share/texmf-dist/tex/generic/xkeyval/xkvutils.tex (/usr/share/texmf-dist/tex/generic/xkeyval/keyval.tex))))) (/usr/share/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/share/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 377. 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[3] [4] Underfull \hbox (badness 6995) in paragraph at lines 141--149 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt m/m/n/10 if \T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth- er-wise, it is \T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m /n/10 1.110223e-16\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 141--149 \T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi 4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 , [5] [6] Underfull \hbox (badness 1178) in paragraph at lines 297--301 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [7] [8] [9] [10] Underfull \hbox (badness 2556) in paragraph at lines 534--540 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [11] [12] (/usr/share/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13] [14] [15] [16] [17] [18] [19] Underfull \hbox (badness 2671) in paragraph at lines 1178--1181 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] Overfull \hbox (26.27782pt too wide) in paragraph at lines 1966--1966 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [31] [32] [33] [34] [35] [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 2402--2404 []\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci ently) by Underfull \hbox (badness 10000) in paragraph at lines 2405--2410 [][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le ngth re-sults, so at-tempt-ing to split via Underfull \hbox (badness 1102) in paragraph at lines 2405--2410 \T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim -ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Underfull \vbox (badness 10000) has occurred while \output is active [51] [52] [53] [54] [55] [56] [57] Underfull \hbox (badness 10000) in paragraph at lines 3784--3786 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [58] [59] [60] Overfull \hbox (6.42029pt too wide) in paragraph at lines 4025--4025 [] \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...) , recursive=recursive) [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Underfull \hbox (badness 2521) in paragraph at lines 5046--5048 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6202--6202 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [92] [93] [94] [95] [96] [97] Overfull \hbox (46.35893pt too wide) in paragraph at lines 6611--6613 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : [98] [99] Underfull \hbox (badness 10000) in paragraph at lines 6759--6762 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [100] [101] Underfull \hbox (badness 6063) in paragraph at lines 6941--6947 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- Underfull \hbox (badness 2343) in paragraph at lines 6941--6947 \T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files and web-pages gen-er- Underfull \hbox (badness 1708) in paragraph at lines 6941--6947 \T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i s not rec-om-mended) when Underfull \hbox (badness 1831) in paragraph at lines 6941--6947 \T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n /10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or [102] Underfull \hbox (badness 3568) in paragraph at lines 7003--7010 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [103] [104] Underfull \vbox (badness 10000) has occurred while \output is active [105] [106] [107] Underfull \hbox (badness 1077) in paragraph at lines 7330--7336 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7330--7336 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [108] [109] [110] [111] [112] Underfull \hbox (badness 2096) in paragraph at lines 7671--7675 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [113] [114] Underfull \hbox (badness 2351) in paragraph at lines 7789--7792 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [115] [116] [117] [118] [119] Underfull \hbox (badness 4479) in paragraph at lines 8115--8125 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [120] [121] [122] [123] [124] Underfull \hbox (badness 1629) in paragraph at lines 8562--8574 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 1609) in paragraph at lines 8562--8574 \T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/ 10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which Underfull \hbox (badness 2426) in paragraph at lines 8562--8574 \T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that value is on those OSes also used as an er-ror code. [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] Underfull \hbox (badness 1178) in paragraph at lines 9298--9302 []\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][ ]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de- [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] Underfull \hbox (badness 1735) in paragraph at lines 10446--10450 \T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ zi4/m/n/10 https : / / en . wikipedia . [152] [153] [154] [155] [156] [157] [158] Underfull \hbox (badness 6396) in paragraph at lines 10885--10893 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 1946) in paragraph at lines 10885--10893 \T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al- ized'' short-cut for [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] Underfull \hbox (badness 4569) in paragraph at lines 12002--12006 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 12002--12006 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] Underfull \hbox (badness 2253) in paragraph at lines 13665--13667 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [197] Underfull \hbox (badness 1565) in paragraph at lines 13738--13742 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [198] Underfull \hbox (badness 4927) in paragraph at lines 13782--13784 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4 /m/n/10 fsep = [199] Underfull \hbox (badness 3148) in paragraph at lines 13875--13880 [][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4 /m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m /n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider [200] Underfull \hbox (badness 1466) in paragraph at lines 13922--13925 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [201] Underfull \hbox (badness 10000) in paragraph at lines 14049--14053 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14060--14063 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [202] [203] [204] [205] [206] Underfull \hbox (badness 3965) in paragraph at lines 14352--14356 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] Underfull \hbox (badness 4429) in paragraph at lines 15128--15131 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [218] Underfull \hbox (badness 10000) in paragraph at lines 15234--15236 []\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic h calls Underfull \hbox (badness 1215) in paragraph at lines 15234--15236 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times in this case, see [219] Underfull \hbox (badness 10000) in paragraph at lines 15256--15261 []\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T 1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls Underfull \hbox (badness 1558) in paragraph at lines 15256--15261 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m /it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m /n/10 is not Underfull \hbox (badness 10000) in paragraph at lines 15268--15272 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 2426) in paragraph at lines 15268--15272 \T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want Underfull \hbox (badness 2035) in paragraph at lines 15307--15311 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use within [220] [221] [222] [223] [224] [225] [226] [227] [228] Underfull \hbox (badness 2452) in paragraph at lines 15906--15910 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 15906--15910 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [229] [230] [231] Underfull \hbox (badness 1092) in paragraph at lines 16079--16084 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [232] [233] [234] Underfull \hbox (badness 6741) in paragraph at lines 16329--16333 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [235] [236] [237] [238] [239] [240] [241] [242] [243] Underfull \vbox (badness 10000) has occurred while \output is active [244] [245] [246] [247] [248] [249] [250] [251] [252] Underfull \hbox (badness 1478) in paragraph at lines 17622--17625 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [253] [254] [255] [256] Underfull \hbox (badness 10000) in paragraph at lines 17877--17879 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [257] [258] [259] [260] [261] [262] [263] [264] Underfull \hbox (badness 1442) in paragraph at lines 18477--18479 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [265] Underfull \hbox (badness 2452) in paragraph at lines 18569--18585 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [266] [267] [268] [269] [270] [271] Underfull \hbox (badness 1248) in paragraph at lines 18988--18991 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [272] [273] [274] [275] Underfull \hbox (badness 4739) in paragraph at lines 19246--19248 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [276] [277] [278] [279] [280] [281] [282] Underfull \hbox (badness 1596) in paragraph at lines 19665--19670 \T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm /m/n/10 . [283] [284] [285] [286] [287] [288] [289] [290] [291] Underfull \hbox (badness 2469) in paragraph at lines 20269--20274 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and [292] Underfull \hbox (badness 10000) in paragraph at lines 20283--20290 [][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / Underfull \hbox (badness 10000) in paragraph at lines 20357--20361 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 20357--20361 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [293] [294] [295] Underfull \hbox (badness 1014) in paragraph at lines 20527--20532 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [296] [297] [298] [299] [300] [301] [302] [303] [304] [305] [306] Underfull \hbox (badness 1264) in paragraph at lines 21317--21322 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [307] Underfull \hbox (badness 4441) in paragraph at lines 21346--21349 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [308] [309] [310] [311] [312] [313] [314] [315] [316] [317] Underfull \hbox (badness 6047) in paragraph at lines 22093--22095 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) == [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] Underfull \hbox (badness 1077) in paragraph at lines 23134--23140 \T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][ ]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T 1/zi4/m/n/10 https : / / en . wikipedia . [334] [335] [336] [337] [338] [339] [340] [341] Underfull \hbox (badness 2790) in paragraph at lines 23630--23633 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 23630--23633 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [342] [343] [344] [345] Underfull \hbox (badness 1194) in paragraph at lines 23912--23915 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [346] [347] Underfull \hbox (badness 2368) in paragraph at lines 24118--24124 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing list, i.e., Underfull \hbox (badness 4981) in paragraph at lines 24118--24124 \T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names = [348] [349] [350] [351] [352] [353] Underfull \hbox (badness 10000) in paragraph at lines 24500--24503 []\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even- tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by [354] [355] [356] [357] [358] [359] [360] [361] [362] Underfull \hbox (badness 10000) in paragraph at lines 25105--25107 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in% [363] [364] [365] [366] [367] [368] [369] [370] [371] [372] [373] [374] Underfull \hbox (badness 1038) in paragraph at lines 25945--25953 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1735) in paragraph at lines 25945--25953 \T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_ DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un- Underfull \hbox (badness 1292) in paragraph at lines 25945--25953 \T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics ","stats","methods")\T1/ptm/m/n/10 . (Set Underfull \hbox (badness 1881) in paragraph at lines 25954--25957 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 25973--25975 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [375] Underfull \hbox (badness 2142) in paragraph at lines 26114--26118 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [376] Underfull \hbox (badness 1968) in paragraph at lines 26164--26169 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [377] [378] [379] Underfull \hbox (badness 10000) in paragraph at lines 26452--26458 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 26452--26458 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 26452--26458 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 26465--26468 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 26491--26493 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [380] Underfull \hbox (badness 10000) in paragraph at lines 26526--26531 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 26532--26543 \T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n /10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 26532--26543 \T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m /n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and Underfull \hbox (badness 7203) in paragraph at lines 26544--26547 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 10000) in paragraph at lines 26568--26573 []\T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (the de-fault ex-cept un-der a CRAN ma -cOS build), Underfull \hbox (badness 2057) in paragraph at lines 26568--26573 \T1/zi4/m/n/10 "mac.binary.el-capitan" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS builds). [381] [382] [383] [384] [385] [386] [387] Underfull \hbox (badness 10000) in paragraph at lines 27086--27089 []\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s ) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of [388] Underfull \hbox (badness 7925) in paragraph at lines 27165--27169 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n /10 cor-re-sponds to Underfull \hbox (badness 1622) in paragraph at lines 27165--27169 [][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\ T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 6125) in paragraph at lines 27170--27179 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor -re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text = [389] [390] [391] [392] [393] [394] [395] [396] [397] [398] [399] Underfull \hbox (badness 2726) in paragraph at lines 27891--27894 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [400] [401] [402] [403] [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] [416] [417] [418] [419] [420] [421] [422] [423] [424] Underfull \hbox (badness 1533) in paragraph at lines 29582--29585 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [425] [426] Underfull \hbox (badness 1163) in paragraph at lines 29745--29756 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [427] [428] [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] Underfull \hbox (badness 10000) in paragraph at lines 31291--31295 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 31291--31295 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. [449] Underfull \hbox (badness 6188) in paragraph at lines 31313--31315 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [450] [451] [452] [453] [454] [455] [456] [457] Underfull \hbox (badness 1655) in paragraph at lines 31869--31871 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [458] [459] [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] Underfull \hbox (badness 2261) in paragraph at lines 32988--32993 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if [474] Underfull \hbox (badness 10000) in paragraph at lines 33015--33021 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters Underfull \hbox (badness 1484) in paragraph at lines 33015--33021 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal and hex-adec-i-mal rep-re-sen-ta-tions like [475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] Underfull \hbox (badness 1072) in paragraph at lines 36157--36161 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 36162--36166 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', [519] Underfull \hbox (badness 10000) in paragraph at lines 36190--36196 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 36190--36196 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 36190--36196 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 36202--36209 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 36202--36209 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 36202--36209 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 36202--36209 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [520] [521] [522] [523] [524] Underfull \hbox (badness 1142) in paragraph at lines 36556--36562 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d [525] [526] [527] [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] Underfull \hbox (badness 1565) in paragraph at lines 37829--37831 []\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t ype) \T1/ptm/m/n/10 for the de-fault [544] [545] [546] [547] [548] [549] [550] [551] [552] Underfull \hbox (badness 4967) in paragraph at lines 38428--38433 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [553] [554] Underfull \hbox (badness 1616) in paragraph at lines 38541--38546 \T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes , pro-vided only the POSIX op-tions [555] [556] [557] [558] [559] [560] [561] [562] Underfull \hbox (badness 1472) in paragraph at lines 39067--39070 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] Underfull \hbox (badness 10000) in paragraph at lines 39981--39985 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10 length(bin) > [576] [577] [578] [579] Underfull \hbox (badness 10000) in paragraph at lines 40232--40235 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [580] [581] [582] Underfull \hbox (badness 10000) in paragraph at lines 40416--40420 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [583] [584] [585] [586] [587] [588] [589] [590] Underfull \hbox (badness 10000) in paragraph at lines 41029--41032 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [591] [592] [593] [594] [595] Underfull \vbox (badness 10000) has occurred while \output is active [596] [597] [598] [599] [600] [601] [602] [603] Underfull \hbox (badness 1990) in paragraph at lines 41933--41941 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 41933--41941 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [604] [605] [606] [607] [608] [609] [610] Underfull \hbox (badness 1917) in paragraph at lines 42439--42446 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [611] [612] [613] [614] [615] [616] [617] [618] [619] [620] Underfull \hbox (badness 3668) in paragraph at lines 43168--43170 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [621] [622] Underfull \hbox (badness 2401) in paragraph at lines 43296--43300 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [623] [624] [625] Underfull \hbox (badness 2111) in paragraph at lines 43485--43490 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 10000) in paragraph at lines 43506--43511 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [626] [627] [628] [629] [630] [631] [632] [633] Underfull \hbox (badness 5417) in paragraph at lines 44088--44092 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [634] Underfull \hbox (badness 10000) in paragraph at lines 44149--44153 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [635] [636]) (./compiler-pkg.tex Chapter 2. [637] [638] [639] [640]) (./datasets-pkg.tex Chapter 3. [641] [642] [643] [644] [645] [646] Underfull \vbox (badness 1472) has occurred while \output is active [647] [648] [649] [650] [651] [652] [653] [654] [655] Underfull \hbox (badness 1097) in paragraph at lines 1031--1035 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] Overfull \vbox (4.26088pt too high) has occurred while \output is active [678] [679] [680] [681] [682] [683] Overfull \vbox (13.87083pt too high) has occurred while \output is active [684] Underfull \vbox (badness 2376) has occurred while \output is active [685] [686] Overfull \vbox (12.25539pt too high) has occurred while \output is active [687] [688] Overfull \vbox (17.12102pt too high) has occurred while \output is active [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] Overfull \vbox (10.49593pt too high) has occurred while \output is active [700] Overfull \vbox (15.49593pt too high) has occurred while \output is active [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715]) (./grDevices-pkg.tex [716] Chapter 4. [717] [718] [719] [720] Underfull \hbox (badness 3158) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm /m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/ m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1 0 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [721] [722] [723] [724] [725] [726] [727] [728] Underfull \hbox (badness 1424) in paragraph at lines 830--832 [][][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) and \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i -fied as [729] [730] [731] [732] [733] Underfull \hbox (badness 5175) in paragraph at lines 1124--1126 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [734] [735] [736] Underfull \hbox (badness 1852) in paragraph at lines 1326--1329 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [737] [738] [739] Underfull \hbox (badness 1490) in paragraph at lines 1532--1537 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [740] [741] [742] [743] [744] [745] Underfull \hbox (badness 1325) in paragraph at lines 1938--1948 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [746] Underfull \hbox (badness 10000) in paragraph at lines 2050--2052 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [747] [748] [749] Underfull \hbox (badness 6758) in paragraph at lines 2228--2231 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [750] [751] [752] [753] [754] [755] [756] [757] [758] Underfull \hbox (badness 10000) in paragraph at lines 2832--2833 Underfull \vbox (badness 10000) has occurred while \output is active [759] [760] [761] [762] [763] [764] [765] [766] Underfull \hbox (badness 10000) in paragraph at lines 3388--3393 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [767] [768] [769] [770] [771] [772] Underfull \hbox (badness 10000) in paragraph at lines 3789--3792 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] Underfull \hbox (badness 10000) in paragraph at lines 4518--4523 [][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en / devnet / actionscript / articles / PLRM . pdf$[][] Underfull \hbox (badness 4181) in paragraph at lines 4518--4523 \T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / devne t / acrobat / pdfs / pdf _ reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in [783] [784] Underfull \hbox (badness 1067) in paragraph at lines 4672--4679 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [785] [786] [787] [788] Underfull \hbox (badness 1377) in paragraph at lines 4975--4980 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [789] Underfull \hbox (badness 1418) in paragraph at lines 5051--5058 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , [790] Underfull \hbox (badness 1755) in paragraph at lines 5069--5071 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [791] Underfull \hbox (badness 1377) in paragraph at lines 5180--5185 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and [792] Underfull \hbox (badness 7344) in paragraph at lines 5249--5251 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [793] [794] Underfull \hbox (badness 2035) in paragraph at lines 5384--5393 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5384--5393 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5384--5393 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [795] Underfull \hbox (badness 10000) in paragraph at lines 5452--5459 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5452--5459 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . [796] [797] Underfull \hbox (badness 1546) in paragraph at lines 5594--5602 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [798] [799] [800] [801] [802] [803] [804] [805] Underfull \hbox (badness 10000) in paragraph at lines 6129--6132 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [806] [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] [817] Underfull \hbox (badness 1189) in paragraph at lines 6951--6953 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [818] Underfull \hbox (badness 10000) in paragraph at lines 7049--7051 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [819] [820] [821] [822] [823] Underfull \hbox (badness 3780) in paragraph at lines 7349--7355 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [824] [825] Underfull \hbox (badness 2680) in paragraph at lines 7550--7552 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [826] [827] [828]) (./graphics-pkg.tex Chapter 5. [829] [830] [831] [832] [833] [834] [835] [836] [837] [838] [839] [840] [841] [842] [843] Underfull \vbox (badness 10000) has occurred while \output is active [844] [845] [846] [847] [848] [849] Underfull \hbox (badness 4634) in paragraph at lines 1351--1354 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [850] [851] [852] [853] [854] [855] [856] [857] [858] [859] [860] [861] [862] [863] Underfull \hbox (badness 1728) in paragraph at lines 2308--2310 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use \T1/zi4/m/n/10 "n " \T1/ptm/m/n/10 to sup-press and see also [864] [865] Underfull \hbox (badness 1009) in paragraph at lines 2399--2406 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] [878] [879] [880] [881] [882] [883] [884] [885] Underfull \vbox (badness 10000) has occurred while \output is active [886] Underfull \vbox (badness 10000) has occurred while \output is active [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] Underfull \hbox (badness 3229) in paragraph at lines 4544--4549 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [898] [899] [900] [901] [902] Underfull \hbox (badness 10000) in paragraph at lines 4901--4907 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4901--4907 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [903] [904] Underfull \hbox (badness 10000) in paragraph at lines 5032--5035 [905 ] Underfull \hbox (badness 10000) in paragraph at lines 5093--5095 [906 ] [907] Underfull \hbox (badness 10000) in paragraph at lines 5283--5285 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [908] Underfull \vbox (badness 10000) has occurred while \output is active [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] [919] [920] [921] [922] [923] [924] [925] [926] [927] [928] [929] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6761--6762 [][] [930 ] [931] Underfull \vbox (badness 10000) has occurred while \output is active [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] Underfull \hbox (badness 2012) in paragraph at lines 7586--7589 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi nt [943] [944] [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] [957] [958] [959] [960] [961] Underfull \hbox (badness 10000) in paragraph at lines 8846--8848 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8848--8850 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [962]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8928 \HeaderA{units}{Graphical Units}{units} [963] [964] [965] [966]) (./grid-pkg.tex Chapter 6. [967] [968] [969] [970] [971] [972] [973] [974] Underfull \hbox (badness 2680) in paragraph at lines 483--486 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [975] [976] [977] [978] [979] [980] [981] [982] [983] Underfull \hbox (badness 4279) in paragraph at lines 1064--1073 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [984] [985] [986] [987] [988] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] Underfull \vbox (badness 10000) has occurred while \output is active [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] Underfull \hbox (badness 1067) in paragraph at lines 4486--4489 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1037] [1038] [1039] [1040] Underfull \hbox (badness 7256) in paragraph at lines 4731--4733 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] Underfull \hbox (badness 1824) in paragraph at lines 6535--6538 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like \T1/zi4/m/n/10 depth [1069] [1070] [1071] [1072]) (./methods-pkg.tex Chapter 7. [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] Underfull \vbox (badness 10000) has occurred while \output is active [1081] Underfull \vbox (badness 10000) has occurred while \output is active [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] [1090] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] Underfull \hbox (badness 2181) in paragraph at lines 1932--1939 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1099] [1100] [1101] Underfull \hbox (badness 2213) in paragraph at lines 2214--2219 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1102] [1103] [1104] [1105] [1106] Underfull \hbox (badness 10000) in paragraph at lines 2574--2577 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1107] [1108] Underfull \hbox (badness 1132) in paragraph at lines 2714--2718 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2746--2751 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1109] [1110] [1111] [1112] [1113] [1114] [1115] Underfull \hbox (badness 1102) in paragraph at lines 3303--3305 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1116] [1117] [1118] [1119] [1120] Underfull \hbox (badness 10000) in paragraph at lines 3634--3639 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3642--3651 []\T1/ptm/m/n/10 The [1121] [1122] Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude = "numeric",altitude [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] [1131] Underfull \hbox (badness 1769) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4472--4478 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] Underfull \vbox (badness 10000) has occurred while \output is active [1141] Underfull \vbox (badness 10000) has occurred while \output is active [1142] [1143] [1144] Underfull \hbox (badness 4036) in paragraph at lines 5437--5440 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1145] Underfull \hbox (badness 3803) in paragraph at lines 5512--5514 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1146] [1147] [1148] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1157] [1158] [1159] [1160] Underfull \vbox (badness 10000) has occurred while \output is active [1161] [1162] [1163]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6973 \aliasA{S4}{S3Part}{S4} [1164] [1165] [1166]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7229 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7231 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7232 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7234 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7235 \aliasA{Summary}{S4groupGeneric}{Summary} [1167] Underfull \hbox (badness 2050) in paragraph at lines 7296--7300 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1168] [1169] Underfull \hbox (badness 1286) in paragraph at lines 7484--7486 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1170] [1171] [1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] Underfull \hbox (badness 1137) in paragraph at lines 10011--10019 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne w("signature",functionDef,...)\T1/ptm/m/n/10 . The [1203] [1204] [1205] [1206] [1207] [1208] [1209] Underfull \hbox (badness 1852) in paragraph at lines 10564--10568 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1210] [1211] [1212]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] Underfull \hbox (badness 3386) in paragraph at lines 1365--1368 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1233] [1234]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248]) (./stats-pkg.tex Chapter 10. [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] Underfull \hbox (badness 1412) in paragraph at lines 875--877 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1262] [1263] [1264] [1265] [1266] [1267] [1268] Underfull \hbox (badness 2503) in paragraph at lines 1356--1359 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1269] [1270] Underfull \hbox (badness 10000) in paragraph at lines 1536--1540 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1 0 or for mul-ti-ple re-sponses of class [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] [1289] [1290] [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] Underfull \hbox (badness 2503) in paragraph at lines 3437--3440 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312] Underfull \hbox (badness 1127) in paragraph at lines 4351--4354 []\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) / sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the [1313] [1314] [1315] [1316] [1317] Underfull \hbox (badness 3989) in paragraph at lines 4681--4688 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1318] [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] Underfull \hbox (badness 2556) in paragraph at lines 5317--5320 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5334--5336 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1327] [1328] [1329] [1330] [1331] [1332] Underfull \hbox (badness 2503) in paragraph at lines 5726--5730 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345] Underfull \hbox (badness 7081) in paragraph at lines 6520--6523 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6524--6526 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] Underfull \hbox (badness 10000) in paragraph at lines 7369--7372 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] Underfull \vbox (badness 10000) has occurred while \output is active [1379] [1380] [1381] [1382] Underfull \hbox (badness 2626) in paragraph at lines 9048--9051 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1383] [1384] Underfull \hbox (badness 2503) in paragraph at lines 9155--9159 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] Underfull \hbox (badness 4518) in paragraph at lines 10469--10474 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1404] [1405] [1406] [1407] [1408] Underfull \hbox (badness 2142) in paragraph at lines 10830--10833 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10849--10852 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1409] Underfull \hbox (badness 1708) in paragraph at lines 10911--10915 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1410] [1411] [1412] [1413] [1414] Underfull \hbox (badness 1694) in paragraph at lines 11307--11310 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11791 \aliasA{hat}{influence.measures}{hat} [1423] [1424] Underfull \hbox (badness 1484) in paragraph at lines 11926--11928 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433] Underfull \hbox (badness 10000) in paragraph at lines 12519--12521 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit = [1434] [1435] [1436] [1437] [1438] Underfull \hbox (badness 2894) in paragraph at lines 12855--12859 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] Underfull \hbox (badness 4518) in paragraph at lines 13605--13610 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1451] [1452] [1453] [1454] [1455] [1456] [1457] [1458] [1459] Underfull \hbox (badness 4518) in paragraph at lines 14257--14262 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1460] [1461] Underfull \hbox (badness 8151) in paragraph at lines 14395--14399 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp olate",statistics = Underfull \hbox (badness 1199) in paragraph at lines 14402--14404 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] Underfull \hbox (badness 2503) in paragraph at lines 15473--15477 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1479] [1480] [1481] [1482] [1483] [1484] [1485] Underfull \hbox (badness 4621) in paragraph at lines 15985--15991 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(,"offset") \T1/ ptm/m/n/10 and [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] Underfull \vbox (badness 10000) has occurred while \output is active [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] [1525] Underfull \hbox (badness 1377) in paragraph at lines 18588--18593 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18593--18596 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 18606--18610 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 18606--18610 \T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re ltol) \T1/ptm/m/n/10 at a step. De-faults to [1526] Underfull \hbox (badness 2662) in paragraph at lines 18614--18618 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1527] [1528] Underfull \vbox (badness 10000) has occurred while \output is active [1529] Overfull \hbox (15.73795pt too wide) in paragraph at lines 18839--18839 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 18842--18842 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1530] [1531] [1532] [1533] [1534] [1535] Underfull \hbox (badness 1337) in paragraph at lines 19264--19267 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] Underfull \hbox (badness 3049) in paragraph at lines 19760--19764 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1545] [1546] [1547] [1548] Underfull \hbox (badness 1194) in paragraph at lines 20018--20021 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1549] [1550] [1551] [1552] [1553] [1554] Underfull \hbox (badness 2503) in paragraph at lines 20397--20400 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 20424--20426 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] Underfull \hbox (badness 10000) in paragraph at lines 21501--21507 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] Underfull \hbox (badness 1337) in paragraph at lines 22855--22861 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] Overfull \hbox (27.74408pt too wide) in paragraph at lines 23420--23420 [] \T1/zi4/m/n/9 t(vapply(1:9, function(typ) quantile(x, prob=prob, type = ty p, ...), quantile(x, prob, type=1)))[] [1601] [1602] [1603] Underfull \hbox (badness 10000) in paragraph at lines 23671--23674 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by Underfull \hbox (badness 4205) in paragraph at lines 23671--23674 \T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for ef-fi-ciency if al-ready [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] Underfull \hbox (badness 1824) in paragraph at lines 24257--24263 []\T1/ptm/m/n/10 Here, all the NAs in \T1/zi4/m/n/10 x \T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24257--24263 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where Underfull \hbox (badness 10000) in paragraph at lines 24278--24281 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] = [1613] Underfull \hbox (badness 3690) in paragraph at lines 24347--24351 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] Underfull \hbox (badness 2165) in paragraph at lines 24856--24861 []\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm /m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1 0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [1622] [1623] [1624] [1625] Underfull \hbox (badness 1867) in paragraph at lines 25061--25063 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25074--25078 \T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = u se.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP [1626] [1627] [1628] [1629] [1630] [1631] [1632] [1633] [1634] [1635] Underfull \vbox (badness 10000) has occurred while \output is active [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] Underfull \vbox (badness 10000) has occurred while \output is active [1647] [1648] Underfull \hbox (badness 3514) in paragraph at lines 26634--26639 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1649] [1650] [1651] Overfull \hbox (2.23795pt too wide) in paragraph at lines 26868--26868 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1652] Underfull \hbox (badness 3514) in paragraph at lines 26904--26910 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1653] [1654] [1655] Underfull \hbox (badness 3514) in paragraph at lines 27118--27123 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1656] [1657] Underfull \hbox (badness 3514) in paragraph at lines 27205--27210 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1658] Underfull \hbox (badness 3514) in paragraph at lines 27270--27275 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1659] Underfull \hbox (badness 3514) in paragraph at lines 27364--27369 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1660] [1661] Underfull \hbox (badness 6691) in paragraph at lines 27456--27461 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] Underfull \hbox (badness 4024) in paragraph at lines 27984--27987 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] Underfull \hbox (badness 5431) in paragraph at lines 28590--28592 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1680] [1681] [1682] Underfull \hbox (badness 5431) in paragraph at lines 28800--28803 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1683] [1684] [1685] [1686] [1687] Underfull \hbox (badness 1337) in paragraph at lines 29114--29118 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1688] [1689] [1690] [1691] [1692] Underfull \hbox (badness 1616) in paragraph at lines 29416--29419 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] Underfull \hbox (badness 3557) in paragraph at lines 30546--30550 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4 /m/n/10 interval = [1710] [1711] [1712] [1713] [1714] [1715] Underfull \hbox (badness 1337) in paragraph at lines 30910--30914 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] Underfull \hbox (badness 1337) in paragraph at lines 31437--31441 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732]) (./stats4-pkg.tex Chapter 11. [1733] [1734] [1735] [1736] [1737] [1738]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1739] [1740] [1741]) (./tcltk-pkg.tex [1742] Chapter 12. [1743] [1744] [1745] [1746] [1747] [1748] [1749] Underfull \vbox (badness 10000) has occurred while \output is active [1750] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1751] [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762]) (./tools-pkg.tex Chapter 13. [1763] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1764] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1765] [1766] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1767] Underfull \hbox (badness 3039) in paragraph at lines 389--391 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1768] [1769] [1770] [1771] [1772] [1773] [1774] Overfull \vbox (7.18602pt too high) has occurred while \output is active [1775] [1776] [1777] [1778] [1779] Underfull \hbox (badness 4441) in paragraph at lines 1139--1149 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1780] Underfull \hbox (badness 1014) in paragraph at lines 1163--1165 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1169--1171 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1206--1209 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1206--1209 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1781] [1782] [1783] [1784] [1785] Underfull \hbox (badness 2293) in paragraph at lines 1558--1560 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1786] [1787] Underfull \hbox (badness 7981) in paragraph at lines 1696--1701 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1788] Underfull \hbox (badness 1082) in paragraph at lines 1703--1705 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1789] [1790] [1791]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1900 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1792] [1793] [1794] [1795] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2202--2202 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1796] [1797] [1798] Underfull \hbox (badness 7981) in paragraph at lines 2371--2377 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1799] [1800] [1801] [1802] [1803] [1804] [1805] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2846. [1806] [1807] [1808] [1809] Underfull \hbox (badness 1424) in paragraph at lines 3128--3130 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1810] [1811] [1812] [1813] [1814] [1815] [1816] [1817] [1818] [1819] [1820] Underfull \hbox (badness 10000) in paragraph at lines 3832--3834 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1821] [1822] Underfull \hbox (badness 10000) in paragraph at lines 3971--3974 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/sl/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/sl/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1823] Underfull \hbox (badness 1137) in paragraph at lines 4073--4075 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1824] [1825] [1826] [1827] [1828] Underfull \hbox (badness 1796) in paragraph at lines 4381--4386 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T 1/zi4/m/sl/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/sl/10 type == [1829] Underfull \hbox (badness 1838) in paragraph at lines 4455--4461 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4455--4461 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1830] [1831] [1832] Underfull \hbox (badness 2197) in paragraph at lines 4671--4681 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/sl/10 available.packages[][][]\T1/ptm/m/n/10 : [1833] Underfull \hbox (badness 1571) in paragraph at lines 4734--4738 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1834] [1835] [1836]) (./utils-pkg.tex Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1837] [1838] [1839] [1840] [1841] Underfull \hbox (badness 10000) in paragraph at lines 376--381 \T1/zi4/m/sl/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p tm/m/n/10 with [1842] [1843] [1844] [1845] [1846] Underfull \hbox (badness 10000) in paragraph at lines 717--723 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 717--723 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1847] [1848] Underfull \hbox (badness 5847) in paragraph at lines 850--856 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 850--856 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1849] Underfull \hbox (badness 3861) in paragraph at lines 918--923 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1850] [1851] [1852] Underfull \hbox (badness 3323) in paragraph at lines 1089--1097 []\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/sl/1 0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1 /ptm/m/n/10 , in-di-cat- Underfull \hbox (badness 2961) in paragraph at lines 1089--1097 \T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f or-mat- Underfull \hbox (badness 3919) in paragraph at lines 1089--1097 \T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 3735) in paragraph at lines 1089--1097 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/sl/10 getOption[][][]("citation.bibtex.ma x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/sl/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 1089--1097 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1101--1103 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1853] [1854] [1855] [1856] [1857] [1858] [1859] Underfull \hbox (badness 1371) in paragraph at lines 1606--1608 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] [1868] Underfull \hbox (badness 2057) in paragraph at lines 2215--2217 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1869] [1870] [1871] [1872] [1873]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.clipboard}) has been already used, duplicate ignored \relax l.2566 ... the Clipboard in MS Windows}{clipboard} [1874] [1875] Underfull \hbox (badness 1748) in paragraph at lines 2733--2736 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1876] [1877] [1878] [1879] [1880] [1881] Underfull \hbox (badness 5388) in paragraph at lines 3142--3146 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/sl/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/sl/10 .TXT\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[][][](...,header = Underfull \hbox (badness 2285) in paragraph at lines 3147--3150 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[] [][](...,header = TRUE,sep = [1882] [1883] [1884] [1885] [1886] [1887] [1888] [1889] [1890] [1891] [1892] Underfull \hbox (badness 1430) in paragraph at lines 3906--3914 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the [1893] Underfull \hbox (badness 1231) in paragraph at lines 3983--3995 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1894] [1895] Underfull \hbox (badness 10000) in paragraph at lines 4141--4143 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/sl/10 dow nload.file[][][] \T1/ptm/m/n/10 and [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905]pdfTeX war ning (ext4): destination with the same identifier (name{Rfn.format}) has been a lready used, duplicate ignored \relax l.4839 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4839 ...mat Unordered and Ordered Lists}{format} [1906] [1907] [1908] [1909] [1910] [1911] [1912] [1913] Underfull \hbox (badness 1622) in paragraph at lines 5358--5362 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] Underfull \hbox (badness 1371) in paragraph at lines 5994--5996 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1923] Underfull \hbox (badness 1502) in paragraph at lines 6083--6088 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6083--6088 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1924] [1925] [1926] Underfull \hbox (badness 10000) in paragraph at lines 6256--6265 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1927] Underfull \hbox (badness 2150) in paragraph at lines 6320--6323 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [1928] [1929] Underfull \hbox (badness 3118) in paragraph at lines 6458--6460 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [1930] [1931] Underfull \hbox (badness 1325) in paragraph at lines 6630--6634 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able Underfull \hbox (badness 4726) in paragraph at lines 6642--6648 \T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of [1932] Underfull \hbox (badness 10000) in paragraph at lines 6714--6717 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be Underfull \hbox (badness 10000) in paragraph at lines 6714--6717 \T1/ptm/m/n/10 passed to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou rce pack-age in-stall. E.g., [1933] Underfull \hbox (badness 3219) in paragraph at lines 6790--6797 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 6790--6797 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 6790--6797 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 6790--6797 [][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")\T1/ ptm/m/n/10 . \T1/zi4/m/sl/10 type = "both" \T1/ptm/m/n/10 will be silently Underfull \hbox (badness 2932) in paragraph at lines 6798--6801 []\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/sl/10 type = "source" \T1/ptm/m /n/10 al-ways works pro-vided the pack-age con-tains no [1934] Underfull \hbox (badness 10000) in paragraph at lines 6934--6939 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942] [1943] [1944] [1945] [1946] [1947] [1948] [1949] [1950] [1951] [1952] [1953] [1954] [1955] [1956] [1957] Underfull \hbox (badness 10000) in paragraph at lines 8434--8436 []\T1/ptm/m/n/10 for \T1/zi4/m/sl/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi 4/m/sl/10 character[][][] \T1/ptm/m/n/10 string as from [1958] Underfull \hbox (badness 2310) in paragraph at lines 8456--8461 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1959] [1960] [1961] [1962] [1963] [1964] [1965] Underfull \hbox (badness 1248) in paragraph at lines 8980--8984 []\T1/zi4/m/sl/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/ n/10 source tar-balls. The name(s) of the pack-ages are taken from the [1966] Underfull \hbox (badness 1789) in paragraph at lines 9058--9060 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1967] [1968] [1969] [1970] [1971] [1972] [1973] [1974] [1975] Underfull \vbox (badness 5533) has occurred while \output is active [1976] [1977] [1978] Underfull \hbox (badness 1097) in paragraph at lines 9895--9898 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [1979] [1980] Underfull \hbox (badness 3000) in paragraph at lines 10031--10036 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [1981] [1982] [1983] [1984] [1985] [1986] [1987] [1988] Underfull \hbox (badness 2134) in paragraph at lines 10614--10619 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [1989] Underfull \hbox (badness 10000) in paragraph at lines 10670--10675 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 10670--10675 \T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 HKEY_CLASSES _ROOT\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 , [1990] [1991] [1992] [1993] [1994] [1995] [1996] Underfull \hbox (badness 2469) in paragraph at lines 11163--11167 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11163--11167 [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [1997] [1998] [1999] [2000] [2001] Underfull \hbox (badness 4060) in paragraph at lines 11494--11497 []\T1/ptm/m/n/10 If `\T1/zi4/m/sl/10 --default-packages\T1/ptm/m/n/10 ' is not used, then \T1/zi4/m/sl/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var i-able [2002] Overfull \hbox (18.77168pt too wide) in paragraph at lines 11517--11517 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2003] [2004] [2005] Underfull \hbox (badness 2150) in paragraph at lines 11756--11758 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2006] [2007] [2008] [2009] Underfull \hbox (badness 10000) in paragraph at lines 11975--11979 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12006--12012 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2010] [2011] Underfull \hbox (badness 1009) in paragraph at lines 12200--12212 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2012] Underfull \hbox (badness 4779) in paragraph at lines 12237--12239 []\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI (\T1/zi4/m/sl/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a nd Underfull \hbox (badness 1077) in paragraph at lines 12267--12274 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2013] [2014] [2015] [2016] [2017] [2018] Underfull \hbox (badness 3780) in paragraph at lines 12668--12672 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 12684--12687 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2019] [2020] [2021] Underfull \hbox (badness 2302) in paragraph at lines 12889--12891 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2022] [2023] [2024] [2025] [2026] Underfull \hbox (badness 10000) in paragraph at lines 13185--13190 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/sl/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 13194--13197 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2027] Underfull \vbox (badness 10000) has occurred while \output is active [2028] [2029] [2030] [2031] [2032] Underfull \hbox (badness 2932) in paragraph at lines 13614--13621 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 13614--13621 \T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/sl/10 extension \T1/ptm/m/n/10 com-po-nent matches (as a reg-exp) the file name. Ob- [2033] [2034] [2035] [2036] Underfull \hbox (badness 6510) in paragraph at lines 13923--13927 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 13930--13933 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 13930--13933 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2037] [2038] [2039] [2040] [2041] [2042] [2043] [2044] [2045] Underfull \hbox (badness 10000) in paragraph at lines 14594--14599 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 14594--14599 [][]\T1/zi4/m/sl/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 i gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 max_repo_cache_age \T1/ptm/m/n /10 and [2046] Underfull \hbox (badness 1052) in paragraph at lines 14600--14602 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See Underfull \hbox (badness 10000) in paragraph at lines 14659--14662 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] [2056] [2057] [2058] Underfull \hbox (badness 10000) in paragraph at lines 15432--15434 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. \T1/zi4/m/sl/10 file = [2059] [2060] [2061]) [2062] [2063] [2064] (./KernSmooth-pkg.tex Chapter 15. [2065] [2066] [2067] [2068] [2069] [2070] [2071] [2072] [2073] [2074]) (./MASS-pkg.tex Chapter 16. [2075] [2076] [2077] [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087] [2088] [2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] [2108] [2109] [2110] [2111] Underfull \hbox (badness 7944) in paragraph at lines 2698--2701 []\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/sl/10 plot \T1/ptm/m/n/10 an d graph-i-cal pa-ram-e-ters. Note that [2112] [2113] [2114] Underfull \hbox (badness 10000) in paragraph at lines 2868--2873 \T1/zi4/m/sl/10 "geometric"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "log-normal"\T1/ptm /m/n/10 , \T1/zi4/m/sl/10 "lognormal"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "logistic "\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "negative [2115] [2116] Underfull \hbox (badness 4686) in paragraph at lines 3036--3038 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] [2132] [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] Underfull \hbox (badness 1117) in paragraph at lines 4797--4800 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/sl/10 response ~ [2142] Underfull \hbox (badness 1117) in paragraph at lines 4875--4878 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/sl/10 response ~ [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] [2159]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.npk}) has been already used, duplicate ignored \relax l.6123 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6123 ...sical N, P, K Factorial Experiment}{npk} [2160] [2161] [2162] [2163] [2164] Underfull \vbox (badness 10000) has occurred while \output is active [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] Underfull \hbox (badness 1117) in paragraph at lines 7094--7101 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/sl/10 response ~ [2173] Underfull \hbox (badness 3138) in paragraph at lines 7165--7171 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2174] [2175] [2176] Underfull \hbox (badness 6775) in paragraph at lines 7344--7347 \T1/ptm/m/n/10 only the first \T1/zi4/m/sl/10 dimen \T1/ptm/m/n/10 dis-crim-i-n ant com-po-nents are used (ex-cept for [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] Underfull \hbox (badness 4686) in paragraph at lines 7977--7979 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2186] [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206] [2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] [2219] [2220] [2221] [2222]) (./Matrix-pkg.tex Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 41--44 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 41--44 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2223] Underfull \hbox (badness 1769) in paragraph at lines 95--98 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2224] [2225] [2226] [2227] Underfull \hbox (badness 5119) in paragraph at lines 508--512 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2228] [2229] Underfull \hbox (badness 2418) in paragraph at lines 597--600 []\T1/ptm/m/n/10 The value of \T1/zi4/m/sl/10 bdiag() \T1/ptm/m/n/10 in-heris f rom class [][]\T1/zi4/m/sl/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1/z i4/m/sl/10 .bdiag() \T1/ptm/m/n/10 re-turns a [2230] [2231] [2232] [2233] [2234] Underfull \hbox (badness 10000) in paragraph at lines 1022--1024 []\T1/zi4/m/sl/10 signature(from = "CHMfactor",to = "sparseMatrix") \T1/ptm/m/n /10 (or equiv-a-lently, \T1/zi4/m/sl/10 to = [2235] [2236]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol}) has been already used, duplicate ignored \relax l.1134 ...- 'Matrix' S4 Generic and Methods}{chol} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic ate ignored \relax l.1134 ...- 'Matrix' S4 Generic and Methods}{chol} Underfull \hbox (badness 1117) in paragraph at lines 1189--1195 \T1/ptm/m/n/10 sider [][]\T1/zi4/m/sl/10 Cholesky[][][]() \T1/ptm/m/n/10 in suc h sit-u-a-tions, since \T1/zi4/m/sl/10 chol(x,pivot=TRUE) \T1/ptm/m/n/10 uses t he same al-go-rithm [2237pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol ,dsCMatrix.Rdash.method}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,lsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,nsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works via] [2238] [2239] Underfull \hbox (badness 2277) in paragraph at lines 1388--1391 []\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer -ent types of ma-tri-ces. Use [2240] [2241] Underfull \hbox (badness 1097) in paragraph at lines 1560--1563 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "MatrixFactorization" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/sl/10 " dgeMatrix"\T1/ptm/m/n/10 , by class Underfull \hbox (badness 1783) in paragraph at lines 1566--1570 []\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1 /ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend [2242]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Sums}) has been already used, duplicate ignored \relax l.1623 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup licate ignored \relax l.1623 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl icate ignored \relax l.1624 \aliasA{colMeans}{colSums}{colMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i gnored \relax l.1645 \aliasA{rowMeans}{colSums}{rowMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig nored \relax l.1656 \aliasA{rowSums}{colSums}{rowSums} [2243] [2244] [2245] Underfull \hbox (badness 3547) in paragraph at lines 1875--1878 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2246] [2247] [2248] [2249] [2250] Underfull \hbox (badness 1360) in paragraph at lines 2298--2302 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("dgCMatrix",...)\T1/ptm/m/n/10 , more typ-i-cally via [2251] [2252] [2253] [2254] Underfull \hbox (badness 2368) in paragraph at lines 2614--2618 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can tbe stored i n more than one pos-si-ble [2255] [2256] Underfull \hbox (badness 6842) in paragraph at lines 2704--2707 []\T1/zi4/m/sl/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T 1/zi4/m/sl/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/sl/10 ldiMatrix[] [][] \T1/ptm/m/n/10 (with ``su-per-class'' [2257] Underfull \hbox (badness 10000) in paragraph at lines 2991--2995 []\T1/zi4/m/sl/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro up meth-ods re-turn a [2258] [2259] [2260] Underfull \hbox (badness 1173) in paragraph at lines 3201--3203 []\T1/zi4/m/sl/10 signature(x = "dMatrix",digits = "numeric")\T1/ptm/m/n/10 : t his group con-tains [][]\T1/zi4/m/sl/10 round[][][]() \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 3248--3250 [][][]\T1/zi4/m/sl/10 drop0[][][](x,tol=1e-10) \T1/ptm/m/n/10 is some-times pre fer-able to (and more ef-fi-cient than) [2261] [2262] Underfull \hbox (badness 1354) in paragraph at lines 3447--3450 []\T1/ptm/m/n/10 a Ma-trix like \T1/zi4/m/sl/10 x \T1/ptm/m/n/10 but with no ex -plicit ze-ros, i.e., \T1/zi4/m/sl/10 !any(x@x == 0)\T1/ptm/m/n/10 , al-ways in -her-it-ing from [2263] [2264] [2265] [2266] [2267] Underfull \hbox (badness 6188) in paragraph at lines 3857--3860 []\T1/zi4/m/sl/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/sl/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 type = Underfull \hbox (badness 5147) in paragraph at lines 3860--3863 []\T1/zi4/m/sl/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/sl/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 type = [2268] [2269] Underfull \hbox (badness 2318) in paragraph at lines 3974--3978 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C lass \T1/zi4/m/sl/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi 4/m/sl/10 "dMatrix"\T1/ptm/m/n/10 , [2270] [2271] Underfull \hbox (badness 5245) in paragraph at lines 4110--4114 []\T1/zi4/m/sl/10 signature(x = "dtpMatrix",logarithm = "logical")\T1/ptm/m/n/1 0 : the [][]\T1/zi4/m/sl/10 determinant[][][](x) [2272] [2273] [2274] [2275] [2276] [2277] Overfull \hbox (3.77782pt too wide) in paragraph at lines 4532--4532 [] \T1/zi4/m/n/9 readHB(gzcon(url("http://www.cise.ufl.edu/research/sparse/RB/ Boeing/msc00726.tar.gz"))))[] Overfull \hbox (48.77782pt too wide) in paragraph at lines 4535--4535 [] \T1/zi4/m/n/9 readMM(gzcon(url("ftp://math.nist.gov/pub/MatrixMarket2/Harwe ll-Boeing/counterx/jgl009.mtx.gz"))))[] [2278] [2279] Underfull \hbox (badness 1931) in paragraph at lines 4767--4769 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/sl/10 zero.print \T1/ ptm/m/n/10 codes should be aligned, see [2280] [2281] [2282] [2283] [2284] Underfull \hbox (badness 1005) in paragraph at lines 5073--5078 []\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. \T1/zi4/m/sl/10 NA \T1/ptm/m/n/10 means no bor-der is drawn. Underfull \hbox (badness 1655) in paragraph at lines 5073--5078 \T1/ptm/m/n/10 When \T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 as by de-fault, \T1/zi4 /m/sl/10 border.col <-if(lwd < .01) NA else NULL \T1/ptm/m/n/10 is Underfull \hbox (badness 5862) in paragraph at lines 5092--5095 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ]\T1/zi4/m/sl/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use [2285] Overfull \hbox (42.75635pt too wide) in paragraph at lines 5139--5139 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2286] Underfull \hbox (badness 3229) in paragraph at lines 5240--5249 []\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o r \T1/ptm/m/n/10 us-ing \T1/zi4/m/sl/10 drop=FALSE\T1/ptm/m/n/10 ) stays within the Underfull \hbox (badness 10000) in paragraph at lines 5282--5284 []\T1/zi4/m/sl/10 signature(x = "matrix",y = "indMatrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use [2287] Underfull \hbox (badness 4995) in paragraph at lines 5287--5290 []\T1/zi4/m/sl/10 signature(from = "numeric",to = "indMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low Underfull \hbox (badness 10000) in paragraph at lines 5297--5300 []\T1/zi4/m/sl/10 signature(from = "indMatrix",to = "matrix")\T1/ptm/m/n/10 : c o-er-cion to a tra-di-tional [2288] [2289] [2290] [2291] [2292] Underfull \hbox (badness 1014) in paragraph at lines 5674--5677 []\T1/zi4/m/sl/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/sl/10 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/sl/10 M \T1/ptm/m/n/10 is a tri-an-gu-lar ma-trix. Anal-o-gously, [2293] [2294] [2295] [2296] Underfull \hbox (badness 10000) in paragraph at lines 5989--5992 []\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2297] Underfull \hbox (badness 2478) in paragraph at lines 6101--6106 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "lde nseMatrix"\T1/ptm/m/n/10 . Class [2298] Underfull \hbox (badness 10000) in paragraph at lines 6109--6112 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2299] Underfull \hbox (badness 10000) in paragraph at lines 6301--6304 []\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2300] Underfull \hbox (badness 10000) in paragraph at lines 6399--6402 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2301] Underfull \hbox (badness 10000) in paragraph at lines 6474--6477 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2302] Underfull \hbox (badness 2050) in paragraph at lines 6550--6553 []\T1/zi4/m/sl/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth -ods for dif-fer-ent types of ma-tri-ces. Use [2303] [2304] [2305] Underfull \hbox (badness 6268) in paragraph at lines 6756--6759 []\T1/ptm/m/n/10 Note that when the re-sult-ing ma-trix is di-ag-o-nal (``math- e-mat-i-cally''), [2306] Underfull \hbox (badness 6268) in paragraph at lines 6780--6784 []\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1 /ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/sl/10 matrix[][][]\T1/ptm/m/n/1 0 . How-ever, [2307]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det }) has been already used, duplicate ignored \relax l.6873 \aliasA{det}{Matrix-class}{det} Underfull \hbox (badness 1527) in paragraph at lines 6966--6968 []\T1/zi4/m/sl/10 signature(x = "Matrix")\T1/ptm/m/n/10 : sim-ply de-fined as \ T1/zi4/m/sl/10 prod(dim(x)) \T1/ptm/m/n/10 (and hence of mode Underfull \hbox (badness 4846) in paragraph at lines 6971--6974 []\T1/zi4/m/sl/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1 /zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 6976--6979 [2308]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.7049 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.7157 ...A{crossprod}{matrix-products}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.7257 ...tcrossprod}{matrix-products}{tcrossprod} [2309pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod.Rdash.methods}) has be en already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7361 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.tc rossprod.Rdash.methods}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7361 ] [2310] Underfull \hbox (badness 10000) in paragraph at lines 7431--7436 []\T1/zi4/m/sl/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use Underfull \hbox (badness 1448) in paragraph at lines 7431--7436 \T1/zi4/m/sl/10 showMethods("%*%",class="dtrMatrix")\T1/ptm/m/n/10 ): ma-trix m ul-ti-pli-ca-tion. Mul-ti-pli-ca-tion of Underfull \hbox (badness 10000) in paragraph at lines 7440--7442 []\T1/zi4/m/sl/10 signature(x = "CsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/sl/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 10000) in paragraph at lines 7442--7444 []\T1/zi4/m/sl/10 signature(x = "TsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/sl/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 1264) in paragraph at lines 7446--7447 []\T1/zi4/m/sl/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures, see [2311] [2312] Underfull \hbox (badness 1430) in paragraph at lines 7590--7595 []\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/sl/10 "MatrixFactorizatio n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/sl/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1 /zi4/m/sl/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 CHMfactor[][][] \T1/ptm/m/n/10 , and [2313] Underfull \hbox (badness 10000) in paragraph at lines 7661--7664 []\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2314] Underfull \hbox (badness 10000) in paragraph at lines 7713--7715 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 X <-(X + t(X))/2 \T1/ ptm/m/n/10 should be done, af-ter \T1/zi4/m/sl/10 X [2315] [2316] Underfull \vbox (badness 10000) has occurred while \output is active [2317] Underfull \hbox (badness 2478) in paragraph at lines 7917--7922 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "nde nseMatrix"\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 7925--7928 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2318] [2319] Underfull \hbox (badness 5924) in paragraph at lines 8119--8121 []\T1/ptm/m/n/10 fast sim-ple meth-ods [2320]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor m}) has been already used, duplicate ignored \relax l.8159 \HeaderA{norm}{Matrix Norms}{norm} pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor ed \relax l.8159 \HeaderA{norm}{Matrix Norms}{norm} [2321] [2322] Underfull \hbox (badness 10000) in paragraph at lines 8432--8435 []\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2323] Underfull \hbox (badness 10000) in paragraph at lines 8522--8525 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2324] Underfull \hbox (badness 10000) in paragraph at lines 8598--8601 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2325] Underfull \vbox (badness 10000) has occurred while \output is active [2326] Underfull \hbox (badness 10000) in paragraph at lines 8724--8726 []\T1/zi4/m/sl/10 signature(x = "matrix",y = "pMatrix") \T1/ptm/m/n/10 and othe r sig-na-tures (use Underfull \hbox (badness 10000) in paragraph at lines 8729--8732 []\T1/zi4/m/sl/10 signature(from = "numeric",to = "pMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low [2327] [2328] [2329] [2330]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.8961 \aliasA{qr}{qr-methods}{qr} [2331] [2332] [2333] [2334]pdfTeX warning (e xt4): destination with the same identifier (name{Rfn.rcond}) has been already u sed, duplicate ignored \relax l.9257 ... the Reciprocal Condition Number}{rcond} [2335] [2336] [2337] [2338] Underfull \hbox (badness 2351) in paragraph at lines 9561--9569 []\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 ( \OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment, via one di-men-sional Underfull \hbox (badness 1852) in paragraph at lines 9561--9569 \T1/ptm/m/n/10 in-dices, if not \T1/zi4/m/sl/10 symmetric [][]sample.int[][][]( nrow*ncol,nnz)\T1/ptm/m/n/10 , then---if \T1/zi4/m/sl/10 rand.x \T1/ptm/m/n/10 is not \T1/zi4/m/sl/10 NULL\T1/ptm/m/n/10 --- Underfull \hbox (badness 2343) in paragraph at lines 9561--9569 \T1/ptm/m/n/10 gets \T1/zi4/m/sl/10 x <-rand.x(nnz) \T1/ptm/m/n/10 and calls [] []\T1/zi4/m/sl/10 sparseMatrix[][][](i=i,j=j,x=x,..)\T1/ptm/m/n/10 . When \T1/z i4/m/sl/10 rand.x=NULL\T1/ptm/m/n/10 , [2339] [2340] [2341] [2342]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.solve}) has been already used, duplicate ignored \relax l.9834 \aliasA{solve}{solve-methods}{solve} [2343] Underfull \hbox (badness 10000) in paragraph at lines 9997--10004 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list \T1/zi4/m/sl/10 ( sparse = [2344] Underfull \hbox (badness 4403) in paragraph at lines 10058--10061 []\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/sl/10 b\T1/ptm/m/n/10 , in-clud-ing \T1/zi4/m/sl/10 "missing"\T1/ptm/m/n/10 , and Underfull \hbox (badness 10000) in paragraph at lines 10128--10131 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, form a for-mu la and data frame [2345] Underfull \hbox (badness 10000) in paragraph at lines 10164--10167 []\T1/ptm/m/n/10 character string or \T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or (co -er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 10175--10179 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2346] [2347] [2348] [2349] [2350] [2351] [2352] [2353] Underfull \hbox (badness 10000) in paragraph at lines 10764--10772 []\T1/zi4/m/sl/10 signature(from = "factor",to = "sparseMatrix")\T1/ptm/m/n/10 : Co-er-cion of a fac-tor to Underfull \hbox (badness 1112) in paragraph at lines 10764--10772 \T1/zi4/m/sl/10 "sparseMatrix" \T1/ptm/m/n/10 pro-duces the ma-trix of in-di-ca -tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class [2354]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr. Q}) has been already used, duplicate ignored \relax l.10830 \aliasA{qr.Q}{sparseQR-class}{qr.Q} [2355] [2356] Underfull \hbox (badness 5036) in paragraph at lines 11016--11018 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2357] [2358] Underfull \hbox (badness 10000) in paragraph at lines 11223--11226 []\T1/zi4/m/sl/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/ m/sl/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list [2359] Underfull \vbox (badness 10000) has occurred while \output is active [2360] [2361] [2362] Underfull \hbox (badness 10000) in paragraph at lines 11492--11497 []\T1/ptm/m/n/10 The va-lid-ity checks do not re-quire a sym-met-ric \T1/zi4/m/ sl/10 Dimnames \T1/ptm/m/n/10 slot, so it can be [2363] Underfull \hbox (badness 2057) in paragraph at lines 11572--11574 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., [2364] [2365] Underfull \hbox (badness 1831) in paragraph at lines 11747--11753 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1 /zi4/m/sl/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 crossprod \T1/ptm/m/n/10 ar e de-fined [2366] Underfull \hbox (badness 1902) in paragraph at lines 11782--11786 []\T1/ptm/m/n/10 Note that \T1/zi4/m/sl/10 new(.)\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 spMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/sl/10 sparseMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/sl/10 "dgTMatrix" \T1/ptm/m/n/10 (a nd other [2367] [2368] [2369] [2370] [2371] [2372] Underfull \hbox (badness 6910) in paragraph at lines 12295--12297 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2373] [2374] [2375]) (./boot-pkg.tex [2376] Chapter 18. [2377] [2378] [2379] [2380] [2381] [2382] [2383] [2384] [2385] [2386] Underfull \hbox (badness 1297) in paragraph at lines 799--809 []\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce sses, the de-fault be-haviour [2387] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2388] Underfull \vbox (badness 10000) has occurred while \output is active [2389] [2390] Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 []\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i n-ter- Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 \T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues Underfull \hbox (badness 1859) in paragraph at lines 1068--1072 \T1/zi4/m/sl/10 c("norm","basic","stud","perc","bca") \T1/ptm/m/n/10 or sim-ply \T1/zi4/m/sl/10 "all" \T1/ptm/m/n/10 which will [2391] Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2392] [2393] [2394] [2395] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2396] [2397] [2398] [2399] [2400] [2401] Underfull \hbox (badness 1005) in paragraph at lines 1800--1807 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/sl/10 " ordinary" \T1/ptm/m/n/10 (case re-sam-pling), [2402] [2403] Underfull \vbox (badness 10000) has occurred while \output is active [2404] Underfull \hbox (badness 7379) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2405] [2406] [2407] [2408] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2409] Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2410] [2411] Underfull \hbox (badness 2970) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/s l/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/sl/10 n \T1/ptm/m/n/10 is t he sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if \T1/zi4/m/sl/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/sl /10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/sl/10 1/n \T1/ptm/m/n /10 is used. This is mul-ti-plied by [2412] [2413] [2414] [2415] [2416] [2417] [2418] [2419] [2420] [2421] [2422] [2423] [2424] [2425] [2426] [2427] [2428] [2429] [2430] [2431] [2432] [2433] [2434] Underfull \hbox (badness 10000) in paragraph at lines 4190--4192 []\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault is [2435] [2436] [2437] [2438] [2439] [2440] [2441] [2442] [2443] [2444] [2445] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2446] [2447] [2448] [2449] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2450] [2451] [2452] [2453] [2454] [2455] [2456] [2457] [2458] [2459] [2460] Underfull \hbox (badness 4954) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/sl/10 "sa ddle.distn"\T1/ptm/m/n/10 . See the help file for [2461] [2462] [2463] [2464] [2465] [2466] [2467] [2468] [2469] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2470] [2471] [2472] [2473] [2474] [2475] [2476] [2477] [2478] [2479]) (./class-pkg.tex [2480] Chapter 19. [2481] [2482] [2483] [2484] [2485] [2486] [2487] [2488] [2489] [2490] [2491] [2492] [2493] [2494] [2495] [2496]) (./cluster-pkg.tex Chapter 20. [2497] [2498] [2499] [2500] [2501] Underfull \vbox (badness 7777) has occurred while \output is active [2502] [2503] [2504] [2505] [2506] Underfull \hbox (badness 4144) in paragraph at lines 688--691 []\T1/ptm/m/n/10 Setting this to \T1/zi4/m/sl/10 FALSE \T1/ptm/m/n/10 saves mem -ory (and hence time), but dis-ables [2507] Underfull \hbox (badness 1412) in paragraph at lines 771--776 []\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][]\T1/zi4/m/sl/10 agnes[][][]\T1/ ptm/m/n/10 ), orig-i-nally. Met-ric \T1/zi4/m/sl/10 "jaccard"\T1/ptm/m/n/10 : K amil Ko-zlowski [2508] [2509] Underfull \hbox (badness 10000) in paragraph at lines 864--866 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2510] [2511] Underfull \hbox (badness 10000) in paragraph at lines 975--977 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 989--993 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2512] [2513] [2514] Underfull \hbox (badness 6110) in paragraph at lines 1190--1194 []\T1/ptm/m/n/10 when \T1/zi4/m/sl/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/ m/sl/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/sl/10 data \T1/ptm/m/n/10 com-po-ne nt, e.g., for [2515] [2516] [2517] Underfull \hbox (badness 10000) in paragraph at lines 1459--1462 [2518] [2519] Underfull \hbox (badness 2503) in paragraph at lines 1571--1574 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "hclust" \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2520] [2521] [2522] [2523] [2524] [2525] [2526] [2527] Underfull \hbox (badness 10000) in paragraph at lines 2162--2165 Underfull \hbox (badness 10000) in paragraph at lines 2176--2182 [][][]\T1/zi4/m/sl/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the [][]\T1/zi4/m/sl/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/sl/10 ell ipsoid \T1/ptm/m/n/10 ob-jects. [2528] [2529] [2530] [2531] Underfull \hbox (badness 6675) in paragraph at lines 2411--2413 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2532] [2533] [2534] [2535] [2536] [2537] [2538] Underfull \hbox (badness 2980) in paragraph at lines 2902--2906 [][][]\T1/zi4/m/sl/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc es; [][]\T1/zi4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cl ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 daisy[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [2539] [2540] [2541] [2542] [2543] Underfull \hbox (badness 1142) in paragraph at lines 3243--3246 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2544] [2545] Underfull \hbox (badness 1142) in paragraph at lines 3362--3365 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2546] [2547] [2548] [2549] Underfull \hbox (badness 2582) in paragraph at lines 3585--3590 [][][]\T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clusplot.default [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi 4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clara[][][]\T1/p tm/m/n/10 , [2550] Underfull \hbox (badness 3209) in paragraph at lines 3647--3652 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi 4/m/sl/10 plot([][]as.hclust[][][](x),...)\T1/ptm/m/n/10 , which Underfull \hbox (badness 8019) in paragraph at lines 3647--3652 \T1/ptm/m/n/10 dis-patches to [][]\T1/zi4/m/sl/10 plot.hclust[][][](..)\T1/ptm/ m/n/10 . If more flex-i-ble plots are needed, con-sider \T1/zi4/m/sl/10 xx [2551] [2552] [2553] [2554] Underfull \hbox (badness 10000) in paragraph at lines 3939--3941 []\T1/ptm/m/n/10 a \T1/zi4/m/sl/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T 1/zi4/m/sl/10 summary.dissimilarity \T1/ptm/m/n/10 one for [2555] [2556] [2557] [2558] Underfull \hbox (badness 2626) in paragraph at lines 4163--4168 []\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/sl/10 barplot[][][]()\T1/ptm/m/ n/10 ; note that the de-fault used to be \T1/zi4/m/sl/10 col = [2559] Underfull \hbox (badness 1383) in paragraph at lines 4241--4246 []\T1/ptm/m/n/10 While \T1/zi4/m/sl/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m /it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/sl/10 partition[][][] \T 1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2560] [2561] [2562] [2563] [2564] [2565] [2566] Underfull \hbox (badness 10000) in paragraph at lines 4684--4686 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/sl/10 xclara.dat\T1/ptm/m/n/10 ' in side [2567] [2568]) (./codetools-pkg.tex Chapter 21. [2569] [2570] [2571] [2572] [2573]) (./foreign-pkg.tex [2574] Chapter 22. [2575] [2576] [2577] [2578] [2579] [2580] [2581] [2582] Underfull \hbox (badness 10000) in paragraph at lines 506--515 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer- Underfull \hbox (badness 10000) in paragraph at lines 506--515 \T1/ptm/m/n/10 ent lev-els. For \T1/zi4/m/sl/10 "append" \T1/ptm/m/n/10 (the de -fault), the first orig-i-nal value Underfull \hbox (badness 10000) in paragraph at lines 506--515 \T1/ptm/m/n/10 la-bel is kept while fur-ther du-pli-cated la-bels are re-named to [2583] Overfull \hbox (6.73795pt too wide) in paragraph at lines 625--625 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2584] [2585] [2586] Underfull \hbox (badness 10000) in paragraph at lines 813--814 [2587] [2588] [2589] [2590] [2591] [2592] [2593] Underfull \hbox (badness 10000) in paragraph at lines 1269--1275 []\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/sl/10 foreign :::writeForeignStata\T1/ptm/m/n/10 , [2594] [2595]) (./lattice-pkg.tex [2596] Chapter 23. [2597] [2598] [2599] [2600] [2601] [2602] [2603] [2604] [2605] [2606] [2607] [2608] [2609] [2610] [2611] [2612] Underfull \hbox (badness 1062) in paragraph at lines 1398--1402 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2613] Underfull \vbox (badness 4416) has occurred while \output is active [2614] Underfull \hbox (badness 1803) in paragraph at lines 1566--1583 [][][]\T1/zi4/m/sl/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack- age, as well as [][]\T1/zi4/m/sl/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 print.trellis[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1583 [][]\T1/zi4/m/sl/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 p anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.loess[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/sl/10 strip.default[][][]\T1/ptm/m/n/10 , [2615] [2616] [2617] Underfull \hbox (badness 3009) in paragraph at lines 1725--1727 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/sl/10 xyplot[][ ][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1755--1759 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2618] [2619] [2620] [2621] [2622] Underfull \hbox (badness 10000) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 When \T1/zi4/m/sl/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, the value of [2623] [2624] [2625] [2626] [2627] [2628] [2629] [2630] [2631] [2632] Underfull \hbox (badness 2781) in paragraph at lines 2848--2850 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/sl/10 col. regions \T1/ptm/m/n/10 ar-gu-ment in [2633] Underfull \hbox (badness 2486) in paragraph at lines 2959--2963 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2634] [2635] [2636] [2637] [2638] [2639] [2640]pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.parallel}) has been already used, duplic ate ignored \relax l.3431 \aliasA{parallel}{B\_08\_splom}{parallel} [2641] [2642] [2643] [2644] [2645] [2646] [2647] Underfull \hbox (badness 5696) in paragraph at lines 3922--3926 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 10000) in paragraph at lines 3922--3926 \T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/sl/10 lattice.options(default.theme = "col.whitebg")\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3922--3926 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2648] [2649] Underfull \hbox (badness 1173) in paragraph at lines 4061--4065 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4088--4090 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2650] [2651] [2652] Underfull \hbox (badness 3492) in paragraph at lines 4284--4294 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/sl/10 col \T1/ptm/m/n/10 is used for com-po-nents \T1/zi4/m/sl/10 "plot.symbol"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4309--4312 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 plo t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 plot.polygon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4312--4314 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 p lot.polygon \T1/ptm/m/n/10 and [2653] [2654] [2655] [2656] [2657] [2658] [2659] [2660] [2661] [2662] Underfull \hbox (badness 6157) in paragraph at lines 5035--5038 []\T1/zi4/m/sl/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles via rect-an-gles. \T1/zi4/m/sl/10 print.shingle \T1/ptm/m/n/10 and [2663] [2664] [2665] [2666] [2667] [2668] Underfull \hbox (badness 10000) in paragraph at lines 5486--5489 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5486--5489 \T1/zi4/m/sl/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le ft of pan-els us-ing [2669] [2670] [2671] [2672] [2673] Underfull \hbox (badness 4805) in paragraph at lines 5846--5850 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 5857--5864 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t ra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 5857--5864 \T1/zi4/m/sl/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/sl/10 panel.identi fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 5857--5864 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z i4/m/sl/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 5857--5864 \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar e used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 5857--5864 [][]\T1/zi4/m/sl/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th e cho-sen view-port if so re-quested. [2674] [2675] [2676] [2677] Underfull \hbox (badness 4242) in paragraph at lines 6157--6162 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6157--6162 \T1/ptm/m/n/10 ter \T1/zi4/m/sl/10 plot.polygon \T1/ptm/m/n/10 is used if there is no group-ing vari-able, oth-er-wise [2678] [2679] Underfull \hbox (badness 2310) in paragraph at lines 6273--6278 []\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/sl/10 x \T1/ptm/m/n/ 10 for ev-ery level of \T1/zi4/m/sl/10 y \T1/ptm/m/n/10 (or the other way round if [2680] [2681] [2682] [2683] [2684] [2685] [2686] [2687] [2688] [2689] [2690] Underfull \hbox (badness 3168) in paragraph at lines 7055--7059 \T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. U se [2691] [2692] [2693] [2694] Underfull \hbox (badness 2012) in paragraph at lines 7326--7329 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2695] [2696] Underfull \hbox (badness 3333) in paragraph at lines 7498--7500 []\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/sl/10 plot.symbol \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 plot.line \T1/ptm/m/n/10 us-ing [2697] [2698] [2699] Underfull \vbox (badness 10000) has occurred while \output is active [2700] [2701] [2702] Underfull \hbox (badness 1436) in paragraph at lines 7912--7918 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2703] [2704] [2705] [2706] [2707] [2708] [2709] [2710] Underfull \hbox (badness 10000) in paragraph at lines 8470--8473 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/sl/10 panel.superp ose \T1/ptm/m/n/10 from [2711] Underfull \hbox (badness 1092) in paragraph at lines 8516--8518 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/sl/10 \T1/ptm/m/n/10 (\T1/zi4/m/sl/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally con- [2712] [2713] Underfull \hbox (badness 3895) in paragraph at lines 8677--8680 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/sl/10 type \T 1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2714] Underfull \hbox (badness 1515) in paragraph at lines 8753--8757 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2715] [2716] Underfull \hbox (badness 6316) in paragraph at lines 8859--8864 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in Underfull \hbox (badness 5908) in paragraph at lines 8876--8879 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/sl/10 xscale.c omponents.default \T1/ptm/m/n/10 and [2717] [2718] [2719] [2720] Overfull \hbox (1.94879pt too wide) in paragraph at lines 9164--9168 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4 /m/sl/10 left,right,left.name,right.name,condition [2721] [2722] [2723] [2724] [2725] [2726] [2727] Underfull \hbox (badness 2310) in paragraph at lines 9622--9626 []\T1/ptm/m/n/10 Factor with lev-els \T1/zi4/m/sl/10 "Svansota"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "No. 462"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Manchuria"\T1/ptm/m /n/10 , \T1/zi4/m/sl/10 "No. 475"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Velvet"\T1/p tm/m/n/10 , Underfull \hbox (badness 3701) in paragraph at lines 9627--9630 []\T1/ptm/m/n/10 Factor with 6 lev-els: \T1/zi4/m/sl/10 "Grand Rapids"\T1/ptm/m /n/10 , \T1/zi4/m/sl/10 "Duluth"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "University Fa rm"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Morris"\T1/ptm/m/n/10 , [2728] [2729] [2730]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.9853 \aliasA{melanoma}{H\_melanoma}{melanoma} [2731] [2732] [2733] Underfull \hbox (badness 4144) in paragraph at lines 10077--10080 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10077--10080 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/sl /10 https : / / ruralhealth . und . edu / projects / [2734] [2735]) (./mgcv-pkg.tex [2736] Chapter 24. [2737] [2738] [2739] Underfull \hbox (badness 1142) in paragraph at lines 171--175 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 196--201 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2740] [2741] [2742] Underfull \vbox (badness 5345) has occurred while \output is active [2743] Underfull \hbox (badness 10000) in paragraph at lines 365--372 [][][]\T1/zi4/m/sl/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 m gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gamObject[][][]\T1/ptm/m/ n/10 , [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 smooth.terms[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 365--372 [][]\T1/zi4/m/sl/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][] [][]predict.gam[][] []\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z i4/m/sl/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gam.side[][][] \T1/ptm/m/n/10 , [2744] [2745] [2746] [2747] [2748] [2749] Underfull \hbox (badness 2205) in paragraph at lines 677--678 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-i ng evi-ron-ment vari-able [2750] [2751] Underfull \hbox (badness 1158) in paragraph at lines 787--789 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2752] Underfull \hbox (badness 1259) in paragraph at lines 850--851 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2753] Underfull \vbox (badness 10000) has occurred while \output is active [2754] [2755] [2756] [2757] [2758] [2759] [2760] [2761] [2762] [2763] [2764] [2765] [2766] [2767] [2768] [2769] [2770] [2771] [2772] [2773] [2774] [2775] [2776] Underfull \hbox (badness 1142) in paragraph at lines 2273--2277 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2777] Underfull \hbox (badness 1043) in paragraph at lines 2299--2304 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2778] [2779] [2780] [2781] [2782] Underfull \vbox (badness 10000) has occurred while \output is active [2783] Underfull \vbox (badness 10000) has occurred while \output is active [2784] Underfull \vbox (badness 10000) has occurred while \output is active [2785] [2786] [2787] [2788] [2789] [2790] [2791] [2792] [2793] [2794] [2795] [2796] [2797] [2798] Underfull \hbox (badness 10000) in paragraph at lines 3620--3624 []\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/sl/10 gam \T1/ptm/m/ n/10 mod-els us-ing \T1/zi4/m/sl/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see [2799] [2800] Underfull \vbox (badness 10000) has occurred while \output is active [2801] [2802] [2803] Underfull \hbox (badness 1184) in paragraph at lines 3906--3910 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2804] [2805] [2806] [2807] [2808] [2809] [2810] [2811] [2812] [2813] [2814] [2815] Underfull \hbox (badness 1142) in paragraph at lines 4628--4632 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2816] Underfull \hbox (badness 1231) in paragraph at lines 4732--4734 []\T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since it uses PQL. It is bet-ter to use \T1/zi4/m/sl/10 gam \T1/ptm/m/n/10 with [2817] [2818] [2819] Underfull \vbox (badness 10000) has occurred while \output is active [2820] [2821] [2822] [2823] Underfull \hbox (badness 2181) in paragraph at lines 5176--5177 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2824] [2825] [2826] [2827] [2828] [2829] [2830] Underfull \hbox (badness 10000) in paragraph at lines 5565--5566 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by \T1/zi4/m/sl/10 gam(... ,fit=FALSE) \T1/ptm/m/n/10 or [2831] [2832] [2833] [2834] [2835] [2836] [2837] [2838] [2839] Underfull \hbox (badness 1142) in paragraph at lines 6068--6072 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2840] [2841] [2842] [2843] [2844] [2845] [2846] [2847] Underfull \hbox (badness 1087) in paragraph at lines 6438--6439 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 rho \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 thet a \T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this cas e, and if [2848] [2849] Underfull \vbox (badness 10000) has occurred while \output is active [2850] Underfull \vbox (badness 10000) has occurred while \output is active [2851] [2852] [2853] [2854] [2855] [2856] [2857] [2858] [2859] [2860] [2861] [2862] Underfull \hbox (badness 1242) in paragraph at lines 7384--7385 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [2863] [2864] [2865] [2866] Underfull \vbox (badness 10000) has occurred while \output is active [2867] [2868] [2869] [2870] [2871] [2872] [2873] [2874] Underfull \hbox (badness 6001) in paragraph at lines 8024--8026 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/sl/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [2875] [2876] [2877] [2878] [2879] [2880] [2881] [2882] [2883] [2884] Underfull \vbox (badness 10000) has occurred while \output is active [2885] [2886] Underfull \hbox (badness 1038) in paragraph at lines 8773--8776 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/sl/10 Dim. pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ sl/10 corMatrix.pdIdnot\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 8773--8776 \T1/zi4/m/sl/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdConstruct.pdId not\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ sl/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 , [2887] Underfull \hbox (badness 10000) in paragraph at lines 8829--8832 []\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/sl/10 pdTens\T1/ptm/m/n/10 , \T1/z i4/m/sl/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdTens\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdMatrix.pdTens\T1/ptm/m/n/10 , [2888] [2889] [2890] [2891] [2892] [2893] [2894] [2895] [2896] [2897] [2898] Underfull \hbox (badness 1852) in paragraph at lines 9500--9503 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and [2899] [2900] Underfull \hbox (badness 1852) in paragraph at lines 9666--9669 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and [2901] [2902] Underfull \vbox (badness 10000) has occurred while \output is active [2903] Underfull \vbox (badness 10000) has occurred while \output is active [2904] Underfull \hbox (badness 1205) in paragraph at lines 9898--9900 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 9898--9900 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 9904--9909 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2905] [2906] Underfull \hbox (badness 1205) in paragraph at lines 9988--9990 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 9988--9990 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [2907] [2908] [2909] Underfull \hbox (badness 1253) in paragraph at lines 10187--10189 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [2910] [2911] [2912] Underfull \hbox (badness 4792) in paragraph at lines 10373--10376 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/sl/ 10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m /n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 10373--10376 \T1/ptm/m/n/10 see [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [2913] [2914] Underfull \hbox (badness 10000) in paragraph at lines 10480--10483 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/sl/1 0 "deviance"\T1/ptm/m/n/10 , [2915] [2916] [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] Underfull \vbox (badness 10000) has occurred while \output is active [2925] Underfull \hbox (badness 3861) in paragraph at lines 11109--11112 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [2926] [2927] Underfull \hbox (badness 1320) in paragraph at lines 11222--11227 \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 b.orig = D*b.repara \T1/ptm/m/n/10 (where \T 1/zi4/m/sl/10 b.orig \T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec-tor). If ma- [2928] Underfull \hbox (badness 1975) in paragraph at lines 11328--11333 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2929] [2930] Underfull \hbox (badness 1762) in paragraph at lines 11417--11429 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/sl/10 tprs[][][]\T 1/ptm/m/n/10 ); \T1/zi4/m/sl/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr es-sion splines with [2931] [2932] [2933] Underfull \hbox (badness 7667) in paragraph at lines 11629--11635 [][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one or two vari-ables, spec-i-fied via terms like [2934] Underfull \hbox (badness 10000) in paragraph at lines 11670--11671 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2935] [2936] [2937] [2938] Underfull \vbox (badness 10000) has occurred while \output is active [2939] Underfull \hbox (badness 10000) in paragraph at lines 11946--11948 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2940] [2941] Underfull \hbox (badness 10000) in paragraph at lines 12074--12075 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2942] [2943] [2944] Underfull \hbox (badness 1436) in paragraph at lines 12212--12219 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) \T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 only al-lows one [2945] [2946] Underfull \hbox (badness 10000) in paragraph at lines 12306--12307 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2947] [2948] [2949] [2950] [2951] [2952] [2953] [2954] [2955] [2956] Underfull \hbox (badness 10000) in paragraph at lines 12894--12900 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 1292) in paragraph at lines 12894--12900 \T1/zi4/m/sl/10 s(...,bs="so",xt=list(bnd=bnd,...)) \T1/ptm/m/n/10 term in a \T 1/zi4/m/sl/10 gam \T1/ptm/m/n/10 for-mula. Note [2957] [2958] [2959] Underfull \vbox (badness 10000) has occurred while \output is active [2960] Underfull \vbox (badness 10000) has occurred while \output is active [2961] [2962] Underfull \hbox (badness 10000) in paragraph at lines 13237--13238 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2963] [2964] [2965] [2966] Underfull \hbox (badness 3895) in paragraph at lines 13498--13501 [][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any num-ber of vari-ables, spec-i-fied via terms like [2967] Underfull \hbox (badness 10000) in paragraph at lines 13543--13545 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2968] [2969] [2970] [2971] Underfull \hbox (badness 1371) in paragraph at lines 13760--13766 []\T1/zi4/m/sl/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive smooths are avail-able (see Underfull \hbox (badness 10000) in paragraph at lines 13800--13804 [][][]\T1/zi4/m/sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/sl/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/ zi4/m/sl/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cubic.regre ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 p.spline[][][]\T1/ptm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 13800--13804 [][]\T1/zi4/m/sl/10 mrf[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 soap[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Spherical.Spline[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 user.de fined.smooth[][][]\T1/ptm/m/n/10 , Overfull \hbox (46.8009pt too wide) in paragraph at lines 13800--13804 [][]\T1/zi4/m/sl/10 smooth.construct.re.smooth.spec[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/sl/10 smooth.construct.gp.smooth.spec[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4 /m/sl/10 factor.smooth.interaction[][][] [2972] [2973] [2974] [2975] Underfull \hbox (badness 2326) in paragraph at lines 14005--14012 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][]\T1/zi4/m/sl/10 smooth.construct[][][] \T1/ptm/m/n/10 and [2976] Underfull \hbox (badness 2158) in paragraph at lines 14090--14090 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [2977] [2978] [2979] [2980] [2981] [2982] [2983] [2984] [2985] [2986] [2987] Underfull \vbox (badness 10000) has occurred while \output is active [2988] [2989] [2990] [2991] [2992] [2993] [2994] [2995] [2996] [2997] [2998] [2999] [3000] [3001] [3002] [3003] Underfull \hbox (badness 1796) in paragraph at lines 15741--15744 []\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/sl/10 persp[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/ sl/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar [3004] [3005] [3006] [3007] [3008] [3009] [3010] [3011]) (./nlme-pkg.tex [3012] Chapter 25. [3013] [3014] [3015] [3016] [3017] [3018] [3019] [3020] [3021] [3022] [3023] [3024] [3025] [3026] [3027] [3028] [3029] [3030] [3031] [3032] [3033] [3034] [3035] [3036] [3037] [3038] [3039] [3040] [3041] [3042] Underfull \hbox (badness 2875) in paragraph at lines 1994--2000 []\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat- ing a co-vari-ate Underfull \hbox (badness 1466) in paragraph at lines 1994--2000 \T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/sl/10 displayLevel \T1/ptm/m/n/1 0 group-ing fac-tor. If equal to \T1/zi4/m/sl/10 TRUE\T1/ptm/m/n/10 , [3043] [3044] [3045] [3046] Underfull \hbox (badness 10000) in paragraph at lines 2256--2262 [][][]\T1/zi4/m/sl/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corARMA [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/sl/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initi alize.corStruct[][][]\T1/ptm/m/n/10 , [3047] [3048] [3049] [3050] [3051] [3052] [3053] [3054] [3055] [3056] [3057] [3058] [3059] [3060] [3061] [3062] [3063] [3064] [3065] [3066] [3067] [3068] [3069] [3070] [3071] [3072] [3073] [3074] [3075] [3076] [3077] [3078] [3079] Underfull \hbox (badness 1067) in paragraph at lines 4414--4419 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3080] [3081] [3082] [3083] [3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] Underfull \hbox (badness 10000) in paragraph at lines 5160--5164 [][][]\T1/zi4/m/sl/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/ m/sl/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getCo variate.varFunc[][][]\T1/ptm/m/n/10 , [3092] [3093] [3094] [3095] [3096] [3097] [3098] Underfull \hbox (badness 10000) in paragraph at lines 5592--5595 [][][]\T1/zi4/m/sl/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.gls[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.lmList[][][]\T1/ptm/m/n/10 , [3099] [3100] [3101] [3102] [3103] [3104] [3105] Underfull \hbox (badness 10000) in paragraph at lines 5973--5978 [][][]\T1/zi4/m/sl/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ sl/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGrou psFormula.lme[][][]\T1/ptm/m/n/10 , [3106] [3107] [3108] [3109] Underfull \hbox (badness 1490) in paragraph at lines 6243--6254 [][][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsC ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsObject[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot. gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 qqnorm.gls[][][]\T1/ptm/m/n/10 , [3110] Underfull \hbox (badness 10000) in paragraph at lines 6307--6309 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3111] [3112] [3113] [3114] [3115] [3116] Underfull \hbox (badness 10000) in paragraph at lines 6721--6723 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3117] [3118] [3119] [3120] Underfull \hbox (badness 10000) in paragraph at lines 6994--7001 [][][]\T1/zi4/m/sl/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gapply[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nffGroupedData [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nfnGroupedData[][][]\T1/ptm/m/n /10 , [3121] [3122] [3123] [3124] Underfull \hbox (badness 10000) in paragraph at lines 7254--7259 [][][]\T1/zi4/m/sl/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ sl/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initialize .glsStruct[][][]\T1/ptm/m/n/10 , [3125] [3126] [3127] [3128] [3129] [3130] [3131] [3132] [3133] [3134] [3135] [3136] [3137] [3138] [3139] [3140] [3141] [3142] [3143] Underfull \hbox (badness 10000) in paragraph at lines 8521--8523 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3144]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sig ma}) has been already used, duplicate ignored \relax l.8572 \aliasA{sigma}{lmeObject}{sigma} [3145] [3146] [3147] [3148] Underfull \hbox (badness 10000) in paragraph at lines 8802--8809 [][][]\T1/zi4/m/sl/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 lme.lmList[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/sl/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.lmLi st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 residuals.lmList[][][]\T1/ptm/m/n/ 10 , [3149] [3150] [3151] [3152] [3153] [3154] [3155] [3156] Underfull \hbox (badness 10000) in paragraph at lines 9324--9331 [][][]\T1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 gls[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik .lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.lmList[][][]\T1/ptm /m/n/10 , [3157] [3158] [3159] [3160] [3161]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9686 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9686 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3162] [3163] [3164] [3165] [3166] [3167] [3168] [3169] [3170] [3171] [3172] [3173] Underfull \hbox (badness 1596) in paragraph at lines 10459--10485 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3174] [3175] Underfull \hbox (badness 1490) in paragraph at lines 10597--10603 [][][]\T1/zi4/m/sl/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlmeObject[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/sl/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pdClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 reStruct[][][]\T1/ptm/m/n/10 , [3176] [3177] [3178] [3179] Underfull \hbox (badness 10000) in paragraph at lines 10838--10840 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3180] [3181] [3182] [3183] [3184] [3185] [3186] [3187] [3188] [3189] [3190] [3191] [3192] [3193] [3194] [3195] [3196] [3197] [3198] [3199] [3200] [3201] [3202] [3203] [3204] [3205] [3206] [3207] [3208] [3209] [3210] [3211] [3212] [3213] [3214] [3215] [3216] [3217] [3218] [3219] [3220] [3221] Underfull \hbox (badness 1286) in paragraph at lines 13734--13741 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/sl /10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/sl/10 inner \T1/ptm/m/n/10 or [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] Underfull \hbox (badness 1215) in paragraph at lines 14280--14282 []\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis. De-faults to [3230] [3231] [3232] [3233] [3234] [3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.random.effects}) has been already used, duplicate ignored \relax l.15177 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15177 ...Extract Random Effects}{random.effects} [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] [3252] [3253] Underfull \hbox (badness 1067) in paragraph at lines 15888--15893 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3254] [3255] [3256] [3257] Underfull \hbox (badness 1448) in paragraph at lines 16131--16140 \T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/sl/10 "response" \T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3258] [3259] [3260] [3261] [3262] [3263] [3264] [3265] [3266] [3267] Underfull \hbox (badness 1728) in paragraph at lines 16836--16839 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3268] [3269] [3270] [3271] [3272] Underfull \hbox (badness 8056) in paragraph at lines 17171--17180 \T1/zi4/m/sl/10 Symmetry" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdCompSymm\T1/ptm/ m/n/10 , \T1/zi4/m/sl/10 "Diagonal" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdDiag\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Multiple of Underfull \hbox (badness 10000) in paragraph at lines 17171--17180 \T1/zi4/m/sl/10 an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdIdent\T1/ptm/ m/n/10 , \T1/zi4/m/sl/10 "General Positive-Definite,Natural Underfull \hbox (badness 5756) in paragraph at lines 17171--17180 \T1/zi4/m/sl/10 Parametrization" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdNatural\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 "General Positive-Definite" \T1/ptm/m/n/10 for [3273] Underfull \hbox (badness 2913) in paragraph at lines 17235--17243 \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 varComb\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Con stant plus power of covariate" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 varConstPower \T1/ptm/m/n/10 , [3274] [3275] [3276] [3277] [3278] [3279] [3280] [3281] [3282] [3283] [3284] Underfull \hbox (badness 10000) in paragraph at lines 18017--18027 [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corLin[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corRatio[][][]\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 18017--18027 [][]\T1/zi4/m/sl/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl /10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.defa ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.gls[][][]\T1/ptm/m/n/10 , [3285] [3286] [3287] [3288] [3289] Underfull \hbox (badness 5036) in paragraph at lines 18341--18350 [][][]\T1/zi4/m/sl/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Vari ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.default[][][]\T1/ptm/ m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/sl/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [3290] [3291] [3292] [3293] [3294] [3295] [3296] [3297] [3298] [3299] [3300] [3301] [3302]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.multinom.1}) has been already used, du plicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3303] Underfull \hbox (badness 1117) in paragraph at lines 78--87 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/sl/10 response ~ [3304] [3305] [3306] [3307] [3308] [3309] [3310]) (./rpart-pkg.tex Chapter 27. [3311] [3312] [3313] [3314] [3315] [3316] [3317] [3318] [3319] [3320] [3321] [3322] [3323] [3324] [3325] [3326] [3327] [3328] [3329] [3330] [3331] [3332] [3333] [3334] [3335] [3336] [3337] [3338] [3339]) (./spatial-pkg.tex [3340] Chapter 28. [3341] [3342] [3343] [3344] [3345] [3346] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3347] [3348] [3349] [3350] [3351] [3352] [3353] [3354] [3355] [3356] [3357] [3358] [3359]) (./survival-pkg.tex [3360] Chapter 29. [3361] [3362] [3363] [3364]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.aml}) has been already used, duplicate ignored \relax l.326 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica te ignored \relax l.326 ... Myelogenous Leukemia survival data}{aml} [3365] [3366] [3367] [3368] [3369] Underfull \vbox (badness 10000) has occurred while \output is active [3370] [3371] [3372] [3373] [3374] [3375] Underfull \hbox (badness 1097) in paragraph at lines 975--977 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. [3376] [3377] [3378]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) has been already used, duplicate ignored \relax l.1178 ...erapy for Stage B/C colon cancer}{colon} Underfull \vbox (badness 2698) has occurred while \output is active [3379] [3380] [3381] [3382] [3383] [3384] [3385] [3386] [3387] [3388] [3389] [3390] [3391] [3392] [3393] [3394] [3395] [3396] [3397] [3398] [3399] [3400] [3401] [3402] [3403] [3404] Underfull \hbox (badness 1389) in paragraph at lines 3055--3057 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3405] [3406] [3407] [3408] Overfull \hbox (467.89665pt too wide) in alignment at lines 3334--3334 [] [] [3409] [3410] [3411] [3412] [3413] [3414] [3415] [3416] [3417] [3418] [3419] [3420] Underfull \vbox (badness 10000) has occurred while \output is active [3421] [3422] [3423] [3424] [3425] [3426] [3427] [3428] [3429] [3430] [3431] Underfull \hbox (badness 5274) in paragraph at lines 4839--4841 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "summary.survfit"\T1/ptm/m /n/10 , which is the re-sult of the [3432] [3433] [3434] [3435] [3436] [3437] [3438] [3439] [3440] [3441] [3442] Underfull \vbox (badness 2126) has occurred while \output is active [3443] [3444] [3445] Underfull \hbox (badness 1281) in paragraph at lines 5866--5869 []\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/sl/10 "response "\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "d fbeta"\T1/ptm/m/n/10 , [3446] [3447] [3448] [3449] [3450]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.solder}) has been already used, duplicate ignored \relax l.6172 ...ata from a soldering experiment}{solder} [3451] [3452] [3453] [3454] [3455] [3456] [3457] [3458] [3459] [3460] [3461] [3462] [3463] [3464] [3465] [3466] [3467] Underfull \hbox (badness 10000) in paragraph at lines 7435--7444 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the form [3468] [3469] Underfull \hbox (badness 1038) in paragraph at lines 7591--7597 \T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d icted sur-vival [3470] [3471] [3472] [3473] [3474] Underfull \hbox (badness 10000) in paragraph at lines 7954--7959 [][][]\T1/zi4/m/sl/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 survfit.object[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/sl/10 plot.survfit[][][]\T1/ptm/m/n/10 , [3475] [3476] [3477] [3478] Underfull \hbox (badness 1389) in paragraph at lines 8235--8245 []\T1/ptm/m/n/10 One of \T1/zi4/m/sl/10 "none"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "plain"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "log" \T1/ptm/m/n/10 (the de-fault), \T 1/zi4/m/sl/10 "log-log" \T1/ptm/m/n/10 or [3479] [3480] [3481] [3482] [3483] [3484] [3485] [3486] Underfull \hbox (badness 1354) in paragraph at lines 8817--8821 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. 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[3557] [3558] [3559] Overfull \hbox (0.8567pt too wide) in paragraph at lines 6634--6636 []\T1/zi4/m/it/10 cbind2,denseMatrix,sparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 6636--6638 []\T1/zi4/m/it/10 cbind2,diagonalMatrix,sparseMatrix-method [3560] Overfull \hbox (0.8567pt too wide) in paragraph at lines 6666--6668 []\T1/zi4/m/it/10 cbind2,sparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 6668--6670 []\T1/zi4/m/it/10 cbind2,sparseMatrix,diagonalMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 6674--6676 []\T1/zi4/m/it/10 cbind2,sparseMatrix,sparseMatrix-method [3561] [3562] [3563] Overfull \hbox (10.8567pt too wide) in paragraph at lines 7398--7400 []\T1/zi4/m/it/10 coerce,atomicVector,dsparseVector-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7400--7402 []\T1/zi4/m/it/10 coerce,atomicVector,sparseVector-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 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coerce,diagonalMatrix,nsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7538--7540 []\T1/zi4/m/it/10 coerce,diagonalMatrix,sparseVector-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 7586--7588 []\T1/zi4/m/it/10 coerce,dsparseMatrix,matrix.csr-method [3566] [3567] Overfull \hbox (5.8567pt too wide) in paragraph at lines 7738--7740 []\T1/zi4/m/it/10 coerce,ldiMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7740--7742 []\T1/zi4/m/it/10 coerce,ldiMatrix,triangularMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7772--7774 []\T1/zi4/m/it/10 coerce,lgeMatrix,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7786--7788 []\T1/zi4/m/it/10 coerce,lgTMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7788--7790 []\T1/zi4/m/it/10 coerce,lgTMatrix,triangularMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at 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This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Mageia) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2018-12-01> (/usr/share/texmf-dist/tex/latex/base/book.cls Document Class: book 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texmf-dist/tex/latex/url/url.sty) (/usr/share/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texmf-dist/tex/latex/base/t1enc.def)) (/usr/share/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texmf-dist/tex/latex/inconsolata/zi4.sty `inconsolata-zi4' v1.112, 2017/01/04 Text macros for Inconsolata (msharpe) (/usr/share/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/share/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/share/texmf-dist/tex/generic/xkeyval/xkvutils.tex (/usr/share/texmf-dist/tex/generic/xkeyval/keyval.tex))))) (/usr/share/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/share/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 377. Package hyperref Warning: Option `pagebackref' has already been used, (hyperref) setting the option has no effect on input line 377. ) (/usr/share/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texmf-dist/tex/latex/base/makeidx.sty) Writing index file fullrefman.idx (./fullrefman.aux) (/usr/share/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./fullrefman.out) (./fullrefman.out) (/usr/share/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/usr/share/texmf-dist/fon ts/map/pdftex/updmap/pdftex.map}] (./fullrefman.toc (/usr/share/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49]) [50] [1] [2] (./base-pkg.tex Chapter 1. [3] [4] Underfull \hbox (badness 6995) in paragraph at lines 141--149 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt m/m/n/10 if \T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth- er-wise, it is \T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m /n/10 1.110223e-16\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 141--149 \T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi 4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 , [5] [6] Underfull \hbox (badness 1178) in paragraph at lines 297--301 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [7] [8] [9] [10] Underfull \hbox (badness 2556) in paragraph at lines 534--540 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [11] [12] (/usr/share/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13] [14] [15] [16] [17] [18] [19] Underfull \hbox (badness 2671) in paragraph at lines 1178--1181 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] Overfull \hbox (26.27782pt too wide) in paragraph at lines 1966--1966 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [31] [32] [33] [34] [35] [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 2402--2404 []\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci ently) by Underfull \hbox (badness 10000) in paragraph at lines 2405--2410 [][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le ngth re-sults, so at-tempt-ing to split via Underfull \hbox (badness 1102) in paragraph at lines 2405--2410 \T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim -ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Underfull \vbox (badness 10000) has occurred while \output is active [51] [52] [53] [54] [55] [56] [57] Underfull \hbox (badness 10000) in paragraph at lines 3784--3786 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [58] [59] [60] Overfull \hbox (6.42029pt too wide) in paragraph at lines 4025--4025 [] \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...) , recursive=recursive) [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Underfull \hbox (badness 2521) in paragraph at lines 5046--5048 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6202--6202 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [92] [93] [94] [95] [96] [97] Overfull \hbox (46.35893pt too wide) in paragraph at lines 6611--6613 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : [98] [99] Underfull \hbox (badness 10000) in paragraph at lines 6759--6762 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [100] [101] Underfull \hbox (badness 6063) in paragraph at lines 6941--6947 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- Underfull \hbox (badness 2343) in paragraph at lines 6941--6947 \T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files and web-pages gen-er- Underfull \hbox (badness 1708) in paragraph at lines 6941--6947 \T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i s not rec-om-mended) when Underfull \hbox (badness 1831) in paragraph at lines 6941--6947 \T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n /10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or [102] Underfull \hbox (badness 3568) in paragraph at lines 7003--7010 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [103] [104] Underfull \vbox (badness 10000) has occurred while \output is active [105] [106] [107] Underfull \hbox (badness 1077) in paragraph at lines 7330--7336 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7330--7336 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [108] [109] [110] [111] [112] Underfull \hbox (badness 2096) in paragraph at lines 7671--7675 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [113] [114] Underfull \hbox (badness 2351) in paragraph at lines 7789--7792 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [115] [116] [117] [118] [119] Underfull \hbox (badness 4479) in paragraph at lines 8115--8125 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [120] [121] [122] [123] [124] Underfull \hbox (badness 1629) in paragraph at lines 8562--8574 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 1609) in paragraph at lines 8562--8574 \T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/ 10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which Underfull \hbox (badness 2426) in paragraph at lines 8562--8574 \T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that value is on those OSes also used as an er-ror code. [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] Underfull \hbox (badness 1178) in paragraph at lines 9298--9302 []\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][ ]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de- [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] Underfull \hbox (badness 1735) in paragraph at lines 10446--10450 \T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ zi4/m/n/10 https : / / en . wikipedia . [152] [153] [154] [155] [156] [157] [158] Underfull \hbox (badness 6396) in paragraph at lines 10885--10893 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 1946) in paragraph at lines 10885--10893 \T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al- ized'' short-cut for [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] Underfull \hbox (badness 4569) in paragraph at lines 12002--12006 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 12002--12006 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] Underfull \hbox (badness 2253) in paragraph at lines 13665--13667 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [197] Underfull \hbox (badness 1565) in paragraph at lines 13738--13742 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [198] Underfull \hbox (badness 4927) in paragraph at lines 13782--13784 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4 /m/n/10 fsep = [199] Underfull \hbox (badness 3148) in paragraph at lines 13875--13880 [][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4 /m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m /n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider [200] Underfull \hbox (badness 1466) in paragraph at lines 13922--13925 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [201] Underfull \hbox (badness 10000) in paragraph at lines 14049--14053 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14060--14063 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [202] [203] [204] [205] [206] Underfull \hbox (badness 3965) in paragraph at lines 14352--14356 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] Underfull \hbox (badness 4429) in paragraph at lines 15128--15131 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [218] Underfull \hbox (badness 10000) in paragraph at lines 15234--15236 []\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic h calls Underfull \hbox (badness 1215) in paragraph at lines 15234--15236 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times in this case, see [219] Underfull \hbox (badness 10000) in paragraph at lines 15256--15261 []\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T 1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls Underfull \hbox (badness 1558) in paragraph at lines 15256--15261 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m /it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m /n/10 is not Underfull \hbox (badness 10000) in paragraph at lines 15268--15272 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 2426) in paragraph at lines 15268--15272 \T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want Underfull \hbox (badness 2035) in paragraph at lines 15307--15311 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use within [220] [221] [222] [223] [224] [225] [226] [227] [228] Underfull \hbox (badness 2452) in paragraph at lines 15906--15910 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 15906--15910 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [229] [230] [231] Underfull \hbox (badness 1092) in paragraph at lines 16079--16084 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [232] [233] [234] Underfull \hbox (badness 6741) in paragraph at lines 16329--16333 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [235] [236] [237] [238] [239] [240] [241] [242] [243] Underfull \vbox (badness 10000) has occurred while \output is active [244] [245] [246] [247] [248] [249] [250] [251] [252] Underfull \hbox (badness 1478) in paragraph at lines 17622--17625 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [253] [254] [255] [256] Underfull \hbox (badness 10000) in paragraph at lines 17877--17879 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [257] [258] [259] [260] [261] [262] [263] [264] Underfull \hbox (badness 1442) in paragraph at lines 18477--18479 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [265] Underfull \hbox (badness 2452) in paragraph at lines 18569--18585 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [266] [267] [268] [269] [270] [271] Underfull \hbox (badness 1248) in paragraph at lines 18988--18991 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [272] [273] [274] [275] Underfull \hbox (badness 4739) in paragraph at lines 19246--19248 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [276] [277] [278] [279] [280] [281] [282] Underfull \hbox (badness 1596) in paragraph at lines 19665--19670 \T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm /m/n/10 . [283] [284] [285] [286] [287] [288] [289] [290] [291] Underfull \hbox (badness 2469) in paragraph at lines 20269--20274 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and [292] Underfull \hbox (badness 10000) in paragraph at lines 20283--20290 [][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / Underfull \hbox (badness 10000) in paragraph at lines 20357--20361 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 20357--20361 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [293] [294] [295] Underfull \hbox (badness 1014) in paragraph at lines 20527--20532 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [296] [297] [298] [299] [300] [301] [302] [303] [304] [305] [306] Underfull \hbox (badness 1264) in paragraph at lines 21317--21322 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [307] Underfull \hbox (badness 4441) in paragraph at lines 21346--21349 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [308] [309] [310] [311] [312] [313] [314] [315] [316] [317] Underfull \hbox (badness 6047) in paragraph at lines 22093--22095 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) == [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] Underfull \hbox (badness 1077) in paragraph at lines 23134--23140 \T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][ ]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T 1/zi4/m/n/10 https : / / en . wikipedia . [334] [335] [336] [337] [338] [339] [340] [341] Underfull \hbox (badness 2790) in paragraph at lines 23630--23633 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 23630--23633 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [342] [343] [344] [345] Underfull \hbox (badness 1194) in paragraph at lines 23912--23915 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [346] [347] Underfull \hbox (badness 2368) in paragraph at lines 24118--24124 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing list, i.e., Underfull \hbox (badness 4981) in paragraph at lines 24118--24124 \T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names = [348] [349] [350] [351] [352] [353] Underfull \hbox (badness 10000) in paragraph at lines 24500--24503 []\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even- tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by [354] [355] [356] [357] [358] [359] [360] [361] [362] Underfull \hbox (badness 10000) in paragraph at lines 25105--25107 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in% [363] [364] [365] [366] [367] [368] [369] [370] [371] [372] [373] [374] Underfull \hbox (badness 1038) in paragraph at lines 25945--25953 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1735) in paragraph at lines 25945--25953 \T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_ DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un- Underfull \hbox (badness 1292) in paragraph at lines 25945--25953 \T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics ","stats","methods")\T1/ptm/m/n/10 . (Set Underfull \hbox (badness 1881) in paragraph at lines 25954--25957 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 25973--25975 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [375] Underfull \hbox (badness 2142) in paragraph at lines 26114--26118 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [376] Underfull \hbox (badness 1968) in paragraph at lines 26164--26169 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [377] [378] [379] Underfull \hbox (badness 10000) in paragraph at lines 26452--26458 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 26452--26458 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 26452--26458 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 26465--26468 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 26491--26493 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [380] Underfull \hbox (badness 10000) in paragraph at lines 26526--26531 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 26532--26543 \T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n /10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 26532--26543 \T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m /n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and Underfull \hbox (badness 7203) in paragraph at lines 26544--26547 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 10000) in paragraph at lines 26568--26573 []\T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (the de-fault ex-cept un-der a CRAN ma -cOS build), Underfull \hbox (badness 2057) in paragraph at lines 26568--26573 \T1/zi4/m/n/10 "mac.binary.el-capitan" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS builds). [381] [382] [383] [384] [385] [386] [387] Underfull \hbox (badness 10000) in paragraph at lines 27086--27089 []\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s ) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of [388] Underfull \hbox (badness 7925) in paragraph at lines 27165--27169 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n /10 cor-re-sponds to Underfull \hbox (badness 1622) in paragraph at lines 27165--27169 [][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\ T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 6125) in paragraph at lines 27170--27179 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor -re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text = [389] [390] [391] [392] [393] [394] [395] [396] [397] [398] [399] Underfull \hbox (badness 2726) in paragraph at lines 27891--27894 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [400] [401] [402] [403] [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] [416] [417] [418] [419] [420] [421] [422] [423] [424] Underfull \hbox (badness 1533) in paragraph at lines 29582--29585 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [425] [426] Underfull \hbox (badness 1163) in paragraph at lines 29745--29756 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [427] [428] [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] Underfull \hbox (badness 10000) in paragraph at lines 31291--31295 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 31291--31295 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. [449] Underfull \hbox (badness 6188) in paragraph at lines 31313--31315 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [450] [451] [452] [453] [454] [455] [456] [457] Underfull \hbox (badness 1655) in paragraph at lines 31869--31871 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [458] [459] [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] Underfull \hbox (badness 2261) in paragraph at lines 32988--32993 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if [474] Underfull \hbox (badness 10000) in paragraph at lines 33015--33021 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters Underfull \hbox (badness 1484) in paragraph at lines 33015--33021 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal and hex-adec-i-mal rep-re-sen-ta-tions like [475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] Underfull \hbox (badness 1072) in paragraph at lines 36157--36161 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 36162--36166 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', [519] Underfull \hbox (badness 10000) in paragraph at lines 36190--36196 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 36190--36196 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 36190--36196 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 36202--36209 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 36202--36209 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 36202--36209 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 36202--36209 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [520] [521] [522] [523] [524] Underfull \hbox (badness 1142) in paragraph at lines 36556--36562 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d [525] [526] [527] [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] Underfull \hbox (badness 1565) in paragraph at lines 37829--37831 []\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t ype) \T1/ptm/m/n/10 for the de-fault [544] [545] [546] [547] [548] [549] [550] [551] [552] Underfull \hbox (badness 4967) in paragraph at lines 38428--38433 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [553] [554] Underfull \hbox (badness 1616) in paragraph at lines 38541--38546 \T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes , pro-vided only the POSIX op-tions [555] [556] [557] [558] [559] [560] [561] [562] Underfull \hbox (badness 1472) in paragraph at lines 39067--39070 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] Underfull \hbox (badness 10000) in paragraph at lines 39981--39985 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10 length(bin) > [576] [577] [578] [579] Underfull \hbox (badness 10000) in paragraph at lines 40232--40235 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [580] [581] [582] Underfull \hbox (badness 10000) in paragraph at lines 40416--40420 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [583] [584] [585] [586] [587] [588] [589] [590] Underfull \hbox (badness 10000) in paragraph at lines 41029--41032 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [591] [592] [593] [594] [595] Underfull \vbox (badness 10000) has occurred while \output is active [596] [597] [598] [599] [600] [601] [602] [603] Underfull \hbox (badness 1990) in paragraph at lines 41933--41941 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 41933--41941 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [604] [605] [606] [607] [608] [609] [610] Underfull \hbox (badness 1917) in paragraph at lines 42439--42446 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [611] [612] [613] [614] [615] [616] [617] [618] [619] [620] Underfull \hbox (badness 3668) in paragraph at lines 43168--43170 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [621] [622] Underfull \hbox (badness 2401) in paragraph at lines 43296--43300 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [623] [624] [625] Underfull \hbox (badness 2111) in paragraph at lines 43485--43490 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 10000) in paragraph at lines 43506--43511 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [626] [627] [628] [629] [630] [631] [632] [633] Underfull \hbox (badness 5417) in paragraph at lines 44088--44092 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [634] Underfull \hbox (badness 10000) in paragraph at lines 44149--44153 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [635] [636]) (./compiler-pkg.tex Chapter 2. [637] [638] [639] [640]) (./datasets-pkg.tex Chapter 3. [641] [642] [643] [644] [645] [646] Underfull \vbox (badness 1472) has occurred while \output is active [647] [648] [649] [650] [651] [652] [653] [654] [655] Underfull \hbox (badness 1097) in paragraph at lines 1031--1035 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] Overfull \vbox (4.26088pt too high) has occurred while \output is active [678] [679] [680] [681] [682] [683] Overfull \vbox (13.87083pt too high) has occurred while \output is active [684] Underfull \vbox (badness 2376) has occurred while \output is active [685] [686] Overfull \vbox (12.25539pt too high) has occurred while \output is active [687] [688] Overfull \vbox (17.12102pt too high) has occurred while \output is active [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] Overfull \vbox (10.49593pt too high) has occurred while \output is active [700] Overfull \vbox (15.49593pt too high) has occurred while \output is active [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715]) (./grDevices-pkg.tex [716] Chapter 4. [717] [718] [719] [720] Underfull \hbox (badness 3158) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm /m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/ m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1 0 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [721] [722] [723] [724] [725] [726] [727] [728] Underfull \hbox (badness 1424) in paragraph at lines 830--832 [][][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) and \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i -fied as [729] [730] [731] [732] [733] Underfull \hbox (badness 5175) in paragraph at lines 1124--1126 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [734] [735] [736] Underfull \hbox (badness 1852) in paragraph at lines 1326--1329 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [737] [738] [739] Underfull \hbox (badness 1490) in paragraph at lines 1532--1537 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [740] [741] [742] [743] [744] [745] Underfull \hbox (badness 1325) in paragraph at lines 1938--1948 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [746] Underfull \hbox (badness 10000) in paragraph at lines 2050--2052 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [747] [748] [749] Underfull \hbox (badness 6758) in paragraph at lines 2228--2231 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [750] [751] [752] [753] [754] [755] [756] [757] [758] Underfull \hbox (badness 10000) in paragraph at lines 2832--2833 Underfull \vbox (badness 10000) has occurred while \output is active [759] [760] [761] [762] [763] [764] [765] [766] Underfull \hbox (badness 10000) in paragraph at lines 3388--3393 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [767] [768] [769] [770] [771] [772] Underfull \hbox (badness 10000) in paragraph at lines 3789--3792 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] Underfull \hbox (badness 10000) in paragraph at lines 4518--4523 [][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en / devnet / actionscript / articles / PLRM . pdf$[][] Underfull \hbox (badness 4181) in paragraph at lines 4518--4523 \T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / devne t / acrobat / pdfs / pdf _ reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in [783] [784] Underfull \hbox (badness 1067) in paragraph at lines 4672--4679 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [785] [786] [787] [788] Underfull \hbox (badness 1377) in paragraph at lines 4975--4980 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [789] Underfull \hbox (badness 1418) in paragraph at lines 5051--5058 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , [790] Underfull \hbox (badness 1755) in paragraph at lines 5069--5071 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [791] Underfull \hbox (badness 1377) in paragraph at lines 5180--5185 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and [792] Underfull \hbox (badness 7344) in paragraph at lines 5249--5251 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [793] [794] Underfull \hbox (badness 2035) in paragraph at lines 5384--5393 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5384--5393 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5384--5393 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [795] Underfull \hbox (badness 10000) in paragraph at lines 5452--5459 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5452--5459 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . [796] [797] Underfull \hbox (badness 1546) in paragraph at lines 5594--5602 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [798] [799] [800] [801] [802] [803] [804] [805] Underfull \hbox (badness 10000) in paragraph at lines 6129--6132 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [806] [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] [817] Underfull \hbox (badness 1189) in paragraph at lines 6951--6953 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [818] Underfull \hbox (badness 10000) in paragraph at lines 7049--7051 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [819] [820] [821] [822] [823] Underfull \hbox (badness 3780) in paragraph at lines 7349--7355 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [824] [825] Underfull \hbox (badness 2680) in paragraph at lines 7550--7552 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [826] [827] [828]) (./graphics-pkg.tex Chapter 5. [829] [830] [831] [832] [833] [834] [835] [836] [837] [838] [839] [840] [841] [842] [843] Underfull \vbox (badness 10000) has occurred while \output is active [844] [845] [846] [847] [848] [849] Underfull \hbox (badness 4634) in paragraph at lines 1351--1354 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [850] [851] [852] [853] [854] [855] [856] [857] [858] [859] [860] [861] [862] [863] Underfull \hbox (badness 1728) in paragraph at lines 2308--2310 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use \T1/zi4/m/n/10 "n " \T1/ptm/m/n/10 to sup-press and see also [864] [865] Underfull \hbox (badness 1009) in paragraph at lines 2399--2406 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] [878] [879] [880] [881] [882] [883] [884] [885] Underfull \vbox (badness 10000) has occurred while \output is active [886] Underfull \vbox (badness 10000) has occurred while \output is active [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] Underfull \hbox (badness 3229) in paragraph at lines 4544--4549 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [898] [899] [900] [901] [902] Underfull \hbox (badness 10000) in paragraph at lines 4901--4907 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4901--4907 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [903] [904] Underfull \hbox (badness 10000) in paragraph at lines 5032--5035 [905 ] Underfull \hbox (badness 10000) in paragraph at lines 5093--5095 [906 ] [907] Underfull \hbox (badness 10000) in paragraph at lines 5283--5285 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [908] Underfull \vbox (badness 10000) has occurred while \output is active [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] [919] [920] [921] [922] [923] [924] [925] [926] [927] [928] [929] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6761--6762 [][] [930 ] [931] Underfull \vbox (badness 10000) has occurred while \output is active [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] Underfull \hbox (badness 2012) in paragraph at lines 7586--7589 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi nt [943] [944] [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] [957] [958] [959] [960] [961] Underfull \hbox (badness 10000) in paragraph at lines 8846--8848 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8848--8850 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [962]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8928 \HeaderA{units}{Graphical Units}{units} [963] [964] [965] [966]) (./grid-pkg.tex Chapter 6. [967] [968] [969] [970] [971] [972] [973] [974] Underfull \hbox (badness 2680) in paragraph at lines 483--486 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [975] [976] [977] [978] [979] [980] [981] [982] [983] Underfull \hbox (badness 4279) in paragraph at lines 1064--1073 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [984] [985] [986] [987] [988] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] Underfull \vbox (badness 10000) has occurred while \output is active [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] Underfull \hbox (badness 1067) in paragraph at lines 4486--4489 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1037] [1038] [1039] [1040] Underfull \hbox (badness 7256) in paragraph at lines 4731--4733 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] Underfull \hbox (badness 1824) in paragraph at lines 6535--6538 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like \T1/zi4/m/n/10 depth [1069] [1070] [1071] [1072]) (./methods-pkg.tex Chapter 7. [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] Underfull \vbox (badness 10000) has occurred while \output is active [1081] Underfull \vbox (badness 10000) has occurred while \output is active [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] [1090] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] Underfull \hbox (badness 2181) in paragraph at lines 1932--1939 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1099] [1100] [1101] Underfull \hbox (badness 2213) in paragraph at lines 2214--2219 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1102] [1103] [1104] [1105] [1106] Underfull \hbox (badness 10000) in paragraph at lines 2574--2577 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1107] [1108] Underfull \hbox (badness 1132) in paragraph at lines 2714--2718 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2746--2751 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1109] [1110] [1111] [1112] [1113] [1114] [1115] Underfull \hbox (badness 1102) in paragraph at lines 3303--3305 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1116] [1117] [1118] [1119] [1120] Underfull \hbox (badness 10000) in paragraph at lines 3634--3639 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3642--3651 []\T1/ptm/m/n/10 The [1121] [1122] Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude = "numeric",altitude [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] [1131] Underfull \hbox (badness 1769) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4472--4478 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] Underfull \vbox (badness 10000) has occurred while \output is active [1141] Underfull \vbox (badness 10000) has occurred while \output is active [1142] [1143] [1144] Underfull \hbox (badness 4036) in paragraph at lines 5437--5440 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1145] Underfull \hbox (badness 3803) in paragraph at lines 5512--5514 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1146] [1147] [1148] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1157] [1158] [1159] [1160] Underfull \vbox (badness 10000) has occurred while \output is active [1161] [1162] [1163]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6973 \aliasA{S4}{S3Part}{S4} [1164] [1165] [1166]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7229 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7231 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7232 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7234 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7235 \aliasA{Summary}{S4groupGeneric}{Summary} [1167] Underfull \hbox (badness 2050) in paragraph at lines 7296--7300 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1168] [1169] Underfull \hbox (badness 1286) in paragraph at lines 7484--7486 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1170] [1171] [1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] Underfull \hbox (badness 1137) in paragraph at lines 10011--10019 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne w("signature",functionDef,...)\T1/ptm/m/n/10 . The [1203] [1204] [1205] [1206] [1207] [1208] [1209] Underfull \hbox (badness 1852) in paragraph at lines 10564--10568 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1210] [1211] [1212]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] Underfull \hbox (badness 3386) in paragraph at lines 1365--1368 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1233] [1234]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248]) (./stats-pkg.tex Chapter 10. [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] Underfull \hbox (badness 1412) in paragraph at lines 875--877 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1262] [1263] [1264] [1265] [1266] [1267] [1268] Underfull \hbox (badness 2503) in paragraph at lines 1356--1359 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1269] [1270] Underfull \hbox (badness 10000) in paragraph at lines 1536--1540 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1 0 or for mul-ti-ple re-sponses of class [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] [1289] [1290] [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] Underfull \hbox (badness 2503) in paragraph at lines 3437--3440 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312] Underfull \hbox (badness 1127) in paragraph at lines 4351--4354 []\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) / sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the [1313] [1314] [1315] [1316] [1317] Underfull \hbox (badness 3989) in paragraph at lines 4681--4688 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1318] [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] Underfull \hbox (badness 2556) in paragraph at lines 5317--5320 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5334--5336 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1327] [1328] [1329] [1330] [1331] [1332] Underfull \hbox (badness 2503) in paragraph at lines 5726--5730 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345] Underfull \hbox (badness 7081) in paragraph at lines 6520--6523 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6524--6526 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] Underfull \hbox (badness 10000) in paragraph at lines 7369--7372 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] Underfull \vbox (badness 10000) has occurred while \output is active [1379] [1380] [1381] [1382] Underfull \hbox (badness 2626) in paragraph at lines 9048--9051 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1383] [1384] Underfull \hbox (badness 2503) in paragraph at lines 9155--9159 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] Underfull \hbox (badness 4518) in paragraph at lines 10469--10474 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1404] [1405] [1406] [1407] [1408] Underfull \hbox (badness 2142) in paragraph at lines 10830--10833 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10849--10852 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1409] Underfull \hbox (badness 1708) in paragraph at lines 10911--10915 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1410] [1411] [1412] [1413] [1414] Underfull \hbox (badness 1694) in paragraph at lines 11307--11310 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11791 \aliasA{hat}{influence.measures}{hat} [1423] [1424] Underfull \hbox (badness 1484) in paragraph at lines 11926--11928 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433] Underfull \hbox (badness 10000) in paragraph at lines 12519--12521 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit = [1434] [1435] [1436] [1437] [1438] Underfull \hbox (badness 2894) in paragraph at lines 12855--12859 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] Underfull \hbox (badness 4518) in paragraph at lines 13605--13610 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1451] [1452] [1453] [1454] [1455] [1456] [1457] [1458] [1459] Underfull \hbox (badness 4518) in paragraph at lines 14257--14262 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1460] [1461] Underfull \hbox (badness 8151) in paragraph at lines 14395--14399 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp olate",statistics = Underfull \hbox (badness 1199) in paragraph at lines 14402--14404 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] Underfull \hbox (badness 2503) in paragraph at lines 15473--15477 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1479] [1480] [1481] [1482] [1483] [1484] [1485] Underfull \hbox (badness 4621) in paragraph at lines 15985--15991 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(,"offset") \T1/ ptm/m/n/10 and [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] Underfull \vbox (badness 10000) has occurred while \output is active [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] [1525] Underfull \hbox (badness 1377) in paragraph at lines 18588--18593 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18593--18596 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 18606--18610 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 18606--18610 \T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re ltol) \T1/ptm/m/n/10 at a step. De-faults to [1526] Underfull \hbox (badness 2662) in paragraph at lines 18614--18618 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1527] [1528] Underfull \vbox (badness 10000) has occurred while \output is active [1529] Overfull \hbox (15.73795pt too wide) in paragraph at lines 18839--18839 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 18842--18842 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1530] [1531] [1532] [1533] [1534] [1535] Underfull \hbox (badness 1337) in paragraph at lines 19264--19267 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] Underfull \hbox (badness 3049) in paragraph at lines 19760--19764 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1545] [1546] [1547] [1548] Underfull \hbox (badness 1194) in paragraph at lines 20018--20021 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1549] [1550] [1551] [1552] [1553] [1554] Underfull \hbox (badness 2503) in paragraph at lines 20397--20400 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 20424--20426 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] Underfull \hbox (badness 10000) in paragraph at lines 21501--21507 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] Underfull \hbox (badness 1337) in paragraph at lines 22855--22861 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] Overfull \hbox (27.74408pt too wide) in paragraph at lines 23420--23420 [] \T1/zi4/m/n/9 t(vapply(1:9, function(typ) quantile(x, prob=prob, type = ty p, ...), quantile(x, prob, type=1)))[] [1601] [1602] [1603] Underfull \hbox (badness 10000) in paragraph at lines 23671--23674 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by Underfull \hbox (badness 4205) in paragraph at lines 23671--23674 \T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for ef-fi-ciency if al-ready [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] Underfull \hbox (badness 1824) in paragraph at lines 24257--24263 []\T1/ptm/m/n/10 Here, all the NAs in \T1/zi4/m/n/10 x \T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24257--24263 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where Underfull \hbox (badness 10000) in paragraph at lines 24278--24281 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] = [1613] Underfull \hbox (badness 3690) in paragraph at lines 24347--24351 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] Underfull \hbox (badness 2165) in paragraph at lines 24856--24861 []\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm /m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1 0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [1622] [1623] [1624] [1625] Underfull \hbox (badness 1867) in paragraph at lines 25061--25063 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25074--25078 \T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = u se.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP [1626] [1627] [1628] [1629] [1630] [1631] [1632] [1633] [1634] [1635] Underfull \vbox (badness 10000) has occurred while \output is active [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] Underfull \vbox (badness 10000) has occurred while \output is active [1647] [1648] Underfull \hbox (badness 3514) in paragraph at lines 26634--26639 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1649] [1650] [1651] Overfull \hbox (2.23795pt too wide) in paragraph at lines 26868--26868 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1652] Underfull \hbox (badness 3514) in paragraph at lines 26904--26910 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1653] [1654] [1655] Underfull \hbox (badness 3514) in paragraph at lines 27118--27123 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1656] [1657] Underfull \hbox (badness 3514) in paragraph at lines 27205--27210 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1658] Underfull \hbox (badness 3514) in paragraph at lines 27270--27275 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1659] Underfull \hbox (badness 3514) in paragraph at lines 27364--27369 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1660] [1661] Underfull \hbox (badness 6691) in paragraph at lines 27456--27461 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] Underfull \hbox (badness 4024) in paragraph at lines 27984--27987 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] Underfull \hbox (badness 5431) in paragraph at lines 28590--28592 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1680] [1681] [1682] Underfull \hbox (badness 5431) in paragraph at lines 28800--28803 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1683] [1684] [1685] [1686] [1687] Underfull \hbox (badness 1337) in paragraph at lines 29114--29118 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1688] [1689] [1690] [1691] [1692] Underfull \hbox (badness 1616) in paragraph at lines 29416--29419 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] Underfull \hbox (badness 3557) in paragraph at lines 30546--30550 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4 /m/n/10 interval = [1710] [1711] [1712] [1713] [1714] [1715] Underfull \hbox (badness 1337) in paragraph at lines 30910--30914 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] Underfull \hbox (badness 1337) in paragraph at lines 31437--31441 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732]) (./stats4-pkg.tex Chapter 11. [1733] [1734] [1735] [1736] [1737] [1738]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1739] [1740] [1741]) (./tcltk-pkg.tex [1742] Chapter 12. [1743] [1744] [1745] [1746] [1747] [1748] [1749] Underfull \vbox (badness 10000) has occurred while \output is active [1750] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1751] [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762]) (./tools-pkg.tex Chapter 13. [1763] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1764] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1765] [1766] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1767] Underfull \hbox (badness 3039) in paragraph at lines 389--391 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1768] [1769] [1770] [1771] [1772] [1773] [1774] Overfull \vbox (7.18602pt too high) has occurred while \output is active [1775] [1776] [1777] [1778] [1779] Underfull \hbox (badness 4441) in paragraph at lines 1139--1149 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1780] Underfull \hbox (badness 1014) in paragraph at lines 1163--1165 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1169--1171 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1206--1209 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1206--1209 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1781] [1782] [1783] [1784] [1785] Underfull \hbox (badness 2293) in paragraph at lines 1558--1560 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1786] [1787] Underfull \hbox (badness 7981) in paragraph at lines 1696--1701 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1788] Underfull \hbox (badness 1082) in paragraph at lines 1703--1705 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1789] [1790] [1791]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1900 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1792] [1793] [1794] [1795] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2202--2202 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1796] [1797] [1798] Underfull \hbox (badness 7981) in paragraph at lines 2371--2377 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1799] [1800] [1801] [1802] [1803] [1804] [1805] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2846. [1806] [1807] [1808] [1809] Underfull \hbox (badness 1424) in paragraph at lines 3128--3130 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1810] [1811] [1812] [1813] [1814] [1815] [1816] [1817] [1818] [1819] [1820] Underfull \hbox (badness 10000) in paragraph at lines 3832--3834 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1821] [1822] Underfull \hbox (badness 10000) in paragraph at lines 3971--3974 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/sl/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/sl/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1823] Underfull \hbox (badness 1137) in paragraph at lines 4073--4075 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1824] [1825] [1826] [1827] [1828] Underfull \hbox (badness 1796) in paragraph at lines 4381--4386 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T 1/zi4/m/sl/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/sl/10 type == [1829] Underfull \hbox (badness 1838) in paragraph at lines 4455--4461 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4455--4461 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1830] [1831] [1832] Underfull \hbox (badness 2197) in paragraph at lines 4671--4681 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/sl/10 available.packages[][][]\T1/ptm/m/n/10 : [1833] Underfull \hbox (badness 1571) in paragraph at lines 4734--4738 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1834] [1835] [1836]) (./utils-pkg.tex Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1837] [1838] [1839] [1840] [1841] Underfull \hbox (badness 10000) in paragraph at lines 376--381 \T1/zi4/m/sl/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p tm/m/n/10 with [1842] [1843] [1844] [1845] [1846] Underfull \hbox (badness 10000) in paragraph at lines 717--723 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 717--723 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1847] [1848] Underfull \hbox (badness 5847) in paragraph at lines 850--856 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 850--856 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1849] Underfull \hbox (badness 3861) in paragraph at lines 918--923 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1850] [1851] [1852] Underfull \hbox (badness 3323) in paragraph at lines 1089--1097 []\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/sl/1 0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1 /ptm/m/n/10 , in-di-cat- Underfull \hbox (badness 2961) in paragraph at lines 1089--1097 \T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f or-mat- Underfull \hbox (badness 3919) in paragraph at lines 1089--1097 \T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 3735) in paragraph at lines 1089--1097 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/sl/10 getOption[][][]("citation.bibtex.ma x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/sl/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 1089--1097 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1101--1103 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1853] [1854] [1855] [1856] [1857] [1858] [1859] Underfull \hbox (badness 1371) in paragraph at lines 1606--1608 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] [1868] Underfull \hbox (badness 2057) in paragraph at lines 2215--2217 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1869] [1870] [1871] [1872] [1873]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.clipboard}) has been already used, duplicate ignored \relax l.2566 ... the Clipboard in MS Windows}{clipboard} [1874] [1875] Underfull \hbox (badness 1748) in paragraph at lines 2733--2736 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1876] [1877] [1878] [1879] [1880] [1881] Underfull \hbox (badness 5388) in paragraph at lines 3142--3146 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/sl/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/sl/10 .TXT\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[][][](...,header = Underfull \hbox (badness 2285) in paragraph at lines 3147--3150 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[] [][](...,header = TRUE,sep = [1882] [1883] [1884] [1885] [1886] [1887] [1888] [1889] [1890] [1891] [1892] Underfull \hbox (badness 1430) in paragraph at lines 3906--3914 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the [1893] Underfull \hbox (badness 1231) in paragraph at lines 3983--3995 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1894] [1895] Underfull \hbox (badness 10000) in paragraph at lines 4141--4143 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/sl/10 dow nload.file[][][] \T1/ptm/m/n/10 and [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905]pdfTeX war ning (ext4): destination with the same identifier (name{Rfn.format}) has been a lready used, duplicate ignored \relax l.4839 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4839 ...mat Unordered and Ordered Lists}{format} [1906] [1907] [1908] [1909] [1910] [1911] [1912] [1913] Underfull \hbox (badness 1622) in paragraph at lines 5358--5362 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] Underfull \hbox (badness 1371) in paragraph at lines 5994--5996 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1923] Underfull \hbox (badness 1502) in paragraph at lines 6083--6088 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6083--6088 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1924] [1925] [1926] Underfull \hbox (badness 10000) in paragraph at lines 6256--6265 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1927] Underfull \hbox (badness 2150) in paragraph at lines 6320--6323 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [1928] [1929] Underfull \hbox (badness 3118) in paragraph at lines 6458--6460 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [1930] [1931] Underfull \hbox (badness 1325) in paragraph at lines 6630--6634 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able Underfull \hbox (badness 4726) in paragraph at lines 6642--6648 \T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of [1932] Underfull \hbox (badness 10000) in paragraph at lines 6714--6717 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be Underfull \hbox (badness 10000) in paragraph at lines 6714--6717 \T1/ptm/m/n/10 passed to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou rce pack-age in-stall. E.g., [1933] Underfull \hbox (badness 3219) in paragraph at lines 6790--6797 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 6790--6797 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 6790--6797 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 6790--6797 [][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")\T1/ ptm/m/n/10 . \T1/zi4/m/sl/10 type = "both" \T1/ptm/m/n/10 will be silently Underfull \hbox (badness 2932) in paragraph at lines 6798--6801 []\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/sl/10 type = "source" \T1/ptm/m /n/10 al-ways works pro-vided the pack-age con-tains no [1934] Underfull \hbox (badness 10000) in paragraph at lines 6934--6939 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942] [1943] [1944] [1945] [1946] [1947] [1948] [1949] [1950] [1951] [1952] [1953] [1954] [1955] [1956] [1957] Underfull \hbox (badness 10000) in paragraph at lines 8434--8436 []\T1/ptm/m/n/10 for \T1/zi4/m/sl/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi 4/m/sl/10 character[][][] \T1/ptm/m/n/10 string as from [1958] Underfull \hbox (badness 2310) in paragraph at lines 8456--8461 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1959] [1960] [1961] [1962] [1963] [1964] [1965] Underfull \hbox (badness 1248) in paragraph at lines 8980--8984 []\T1/zi4/m/sl/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/ n/10 source tar-balls. The name(s) of the pack-ages are taken from the [1966] Underfull \hbox (badness 1789) in paragraph at lines 9058--9060 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1967] [1968] [1969] [1970] [1971] [1972] [1973] [1974] [1975] Underfull \vbox (badness 5533) has occurred while \output is active [1976] [1977] [1978] Underfull \hbox (badness 1097) in paragraph at lines 9895--9898 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [1979] [1980] Underfull \hbox (badness 3000) in paragraph at lines 10031--10036 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [1981] [1982] [1983] [1984] [1985] [1986] [1987] [1988] Underfull \hbox (badness 2134) in paragraph at lines 10614--10619 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [1989] Underfull \hbox (badness 10000) in paragraph at lines 10670--10675 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 10670--10675 \T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 HKEY_CLASSES _ROOT\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 , [1990] [1991] [1992] [1993] [1994] [1995] [1996] Underfull \hbox (badness 2469) in paragraph at lines 11163--11167 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11163--11167 [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [1997] [1998] [1999] [2000] [2001] Underfull \hbox (badness 4060) in paragraph at lines 11494--11497 []\T1/ptm/m/n/10 If `\T1/zi4/m/sl/10 --default-packages\T1/ptm/m/n/10 ' is not used, then \T1/zi4/m/sl/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var i-able [2002] Overfull \hbox (18.77168pt too wide) in paragraph at lines 11517--11517 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2003] [2004] [2005] Underfull \hbox (badness 2150) in paragraph at lines 11756--11758 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2006] [2007] [2008] [2009] Underfull \hbox (badness 10000) in paragraph at lines 11975--11979 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12006--12012 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2010] [2011] Underfull \hbox (badness 1009) in paragraph at lines 12200--12212 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2012] Underfull \hbox (badness 4779) in paragraph at lines 12237--12239 []\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI (\T1/zi4/m/sl/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a nd Underfull \hbox (badness 1077) in paragraph at lines 12267--12274 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2013] [2014] [2015] [2016] [2017] [2018] Underfull \hbox (badness 3780) in paragraph at lines 12668--12672 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 12684--12687 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2019] [2020] [2021] Underfull \hbox (badness 2302) in paragraph at lines 12889--12891 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2022] [2023] [2024] [2025] [2026] Underfull \hbox (badness 10000) in paragraph at lines 13185--13190 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/sl/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 13194--13197 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2027] Underfull \vbox (badness 10000) has occurred while \output is active [2028] [2029] [2030] [2031] [2032] Underfull \hbox (badness 2932) in paragraph at lines 13614--13621 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 13614--13621 \T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/sl/10 extension \T1/ptm/m/n/10 com-po-nent matches (as a reg-exp) the file name. Ob- [2033] [2034] [2035] [2036] Underfull \hbox (badness 6510) in paragraph at lines 13923--13927 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 13930--13933 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 13930--13933 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2037] [2038] [2039] [2040] [2041] [2042] [2043] [2044] [2045] Underfull \hbox (badness 10000) in paragraph at lines 14594--14599 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 14594--14599 [][]\T1/zi4/m/sl/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 i gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 max_repo_cache_age \T1/ptm/m/n /10 and [2046] Underfull \hbox (badness 1052) in paragraph at lines 14600--14602 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See Underfull \hbox (badness 10000) in paragraph at lines 14659--14662 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] [2056] [2057] [2058] Underfull \hbox (badness 10000) in paragraph at lines 15432--15434 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. \T1/zi4/m/sl/10 file = [2059] [2060] [2061]) [2062] [2063] [2064] (./KernSmooth-pkg.tex Chapter 15. [2065] [2066] [2067] [2068] [2069] [2070] [2071] [2072] [2073] [2074]) (./MASS-pkg.tex Chapter 16. [2075] [2076] [2077] [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087] [2088] [2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] [2108] [2109] [2110] [2111] Underfull \hbox (badness 7944) in paragraph at lines 2698--2701 []\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/sl/10 plot \T1/ptm/m/n/10 an d graph-i-cal pa-ram-e-ters. Note that [2112] [2113] [2114] Underfull \hbox (badness 10000) in paragraph at lines 2868--2873 \T1/zi4/m/sl/10 "geometric"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "log-normal"\T1/ptm /m/n/10 , \T1/zi4/m/sl/10 "lognormal"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "logistic "\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "negative [2115] [2116] Underfull \hbox (badness 4686) in paragraph at lines 3036--3038 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] [2132] [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] Underfull \hbox (badness 1117) in paragraph at lines 4797--4800 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/sl/10 response ~ [2142] Underfull \hbox (badness 1117) in paragraph at lines 4875--4878 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/sl/10 response ~ [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] [2159]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.npk}) has been already used, duplicate ignored \relax l.6123 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6123 ...sical N, P, K Factorial Experiment}{npk} [2160] [2161] [2162] [2163] [2164] Underfull \vbox (badness 10000) has occurred while \output is active [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] Underfull \hbox (badness 1117) in paragraph at lines 7094--7101 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/sl/10 response ~ [2173] Underfull \hbox (badness 3138) in paragraph at lines 7165--7171 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2174] [2175] [2176] Underfull \hbox (badness 6775) in paragraph at lines 7344--7347 \T1/ptm/m/n/10 only the first \T1/zi4/m/sl/10 dimen \T1/ptm/m/n/10 dis-crim-i-n ant com-po-nents are used (ex-cept for [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] Underfull \hbox (badness 4686) in paragraph at lines 7977--7979 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2186] [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206] [2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] [2219] [2220] [2221] [2222]) (./Matrix-pkg.tex Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 41--44 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 41--44 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2223] Underfull \hbox (badness 1769) in paragraph at lines 95--98 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2224] [2225] [2226] [2227] Underfull \hbox (badness 5119) in paragraph at lines 508--512 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2228] [2229] Underfull \hbox (badness 2418) in paragraph at lines 597--600 []\T1/ptm/m/n/10 The value of \T1/zi4/m/sl/10 bdiag() \T1/ptm/m/n/10 in-heris f rom class [][]\T1/zi4/m/sl/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1/z i4/m/sl/10 .bdiag() \T1/ptm/m/n/10 re-turns a [2230] [2231] [2232] [2233] [2234] Underfull \hbox (badness 10000) in paragraph at lines 1022--1024 []\T1/zi4/m/sl/10 signature(from = "CHMfactor",to = "sparseMatrix") \T1/ptm/m/n /10 (or equiv-a-lently, \T1/zi4/m/sl/10 to = [2235] [2236]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol}) has been already used, duplicate ignored \relax l.1134 ...- 'Matrix' S4 Generic and Methods}{chol} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic ate ignored \relax l.1134 ...- 'Matrix' S4 Generic and Methods}{chol} Underfull \hbox (badness 1117) in paragraph at lines 1189--1195 \T1/ptm/m/n/10 sider [][]\T1/zi4/m/sl/10 Cholesky[][][]() \T1/ptm/m/n/10 in suc h sit-u-a-tions, since \T1/zi4/m/sl/10 chol(x,pivot=TRUE) \T1/ptm/m/n/10 uses t he same al-go-rithm [2237pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol ,dsCMatrix.Rdash.method}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,lsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,nsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works via] [2238] [2239] Underfull \hbox (badness 2277) in paragraph at lines 1388--1391 []\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer -ent types of ma-tri-ces. Use [2240] [2241] Underfull \hbox (badness 1097) in paragraph at lines 1560--1563 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "MatrixFactorization" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/sl/10 " dgeMatrix"\T1/ptm/m/n/10 , by class Underfull \hbox (badness 1783) in paragraph at lines 1566--1570 []\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1 /ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend [2242]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Sums}) has been already used, duplicate ignored \relax l.1623 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup licate ignored \relax l.1623 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl icate ignored \relax l.1624 \aliasA{colMeans}{colSums}{colMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i gnored \relax l.1645 \aliasA{rowMeans}{colSums}{rowMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig nored \relax l.1656 \aliasA{rowSums}{colSums}{rowSums} [2243] [2244] [2245] Underfull \hbox (badness 3547) in paragraph at lines 1875--1878 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2246] [2247] [2248] [2249] [2250] Underfull \hbox (badness 1360) in paragraph at lines 2298--2302 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("dgCMatrix",...)\T1/ptm/m/n/10 , more typ-i-cally via [2251] [2252] [2253] [2254] Underfull \hbox (badness 2368) in paragraph at lines 2614--2618 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can tbe stored i n more than one pos-si-ble [2255] [2256] Underfull \hbox (badness 6842) in paragraph at lines 2704--2707 []\T1/zi4/m/sl/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T 1/zi4/m/sl/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/sl/10 ldiMatrix[] [][] \T1/ptm/m/n/10 (with ``su-per-class'' [2257] Underfull \hbox (badness 10000) in paragraph at lines 2991--2995 []\T1/zi4/m/sl/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro up meth-ods re-turn a [2258] [2259] [2260] Underfull \hbox (badness 1173) in paragraph at lines 3201--3203 []\T1/zi4/m/sl/10 signature(x = "dMatrix",digits = "numeric")\T1/ptm/m/n/10 : t his group con-tains [][]\T1/zi4/m/sl/10 round[][][]() \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 3248--3250 [][][]\T1/zi4/m/sl/10 drop0[][][](x,tol=1e-10) \T1/ptm/m/n/10 is some-times pre fer-able to (and more ef-fi-cient than) [2261] [2262] Underfull \hbox (badness 1354) in paragraph at lines 3447--3450 []\T1/ptm/m/n/10 a Ma-trix like \T1/zi4/m/sl/10 x \T1/ptm/m/n/10 but with no ex -plicit ze-ros, i.e., \T1/zi4/m/sl/10 !any(x@x == 0)\T1/ptm/m/n/10 , al-ways in -her-it-ing from [2263] [2264] [2265] [2266] [2267] Underfull \hbox (badness 6188) in paragraph at lines 3857--3860 []\T1/zi4/m/sl/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/sl/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 type = Underfull \hbox (badness 5147) in paragraph at lines 3860--3863 []\T1/zi4/m/sl/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/sl/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 type = [2268] [2269] Underfull \hbox (badness 2318) in paragraph at lines 3974--3978 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C lass \T1/zi4/m/sl/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi 4/m/sl/10 "dMatrix"\T1/ptm/m/n/10 , [2270] [2271] Underfull \hbox (badness 5245) in paragraph at lines 4110--4114 []\T1/zi4/m/sl/10 signature(x = "dtpMatrix",logarithm = "logical")\T1/ptm/m/n/1 0 : the [][]\T1/zi4/m/sl/10 determinant[][][](x) [2272] [2273] [2274] [2275] [2276] [2277] Overfull \hbox (3.77782pt too wide) in paragraph at lines 4532--4532 [] \T1/zi4/m/n/9 readHB(gzcon(url("http://www.cise.ufl.edu/research/sparse/RB/ Boeing/msc00726.tar.gz"))))[] Overfull \hbox (48.77782pt too wide) in paragraph at lines 4535--4535 [] \T1/zi4/m/n/9 readMM(gzcon(url("ftp://math.nist.gov/pub/MatrixMarket2/Harwe ll-Boeing/counterx/jgl009.mtx.gz"))))[] [2278] [2279] Underfull \hbox (badness 1931) in paragraph at lines 4767--4769 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/sl/10 zero.print \T1/ ptm/m/n/10 codes should be aligned, see [2280] [2281] [2282] [2283] [2284] Underfull \hbox (badness 1005) in paragraph at lines 5073--5078 []\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. \T1/zi4/m/sl/10 NA \T1/ptm/m/n/10 means no bor-der is drawn. Underfull \hbox (badness 1655) in paragraph at lines 5073--5078 \T1/ptm/m/n/10 When \T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 as by de-fault, \T1/zi4 /m/sl/10 border.col <-if(lwd < .01) NA else NULL \T1/ptm/m/n/10 is Underfull \hbox (badness 5862) in paragraph at lines 5092--5095 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ]\T1/zi4/m/sl/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use [2285] Overfull \hbox (42.75635pt too wide) in paragraph at lines 5139--5139 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2286] Underfull \hbox (badness 3229) in paragraph at lines 5240--5249 []\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o r \T1/ptm/m/n/10 us-ing \T1/zi4/m/sl/10 drop=FALSE\T1/ptm/m/n/10 ) stays within the Underfull \hbox (badness 10000) in paragraph at lines 5282--5284 []\T1/zi4/m/sl/10 signature(x = "matrix",y = "indMatrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use [2287] Underfull \hbox (badness 4995) in paragraph at lines 5287--5290 []\T1/zi4/m/sl/10 signature(from = "numeric",to = "indMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low Underfull \hbox (badness 10000) in paragraph at lines 5297--5300 []\T1/zi4/m/sl/10 signature(from = "indMatrix",to = "matrix")\T1/ptm/m/n/10 : c o-er-cion to a tra-di-tional [2288] [2289] [2290] [2291] [2292] Underfull \hbox (badness 1014) in paragraph at lines 5674--5677 []\T1/zi4/m/sl/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/sl/10 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/sl/10 M \T1/ptm/m/n/10 is a tri-an-gu-lar ma-trix. Anal-o-gously, [2293] [2294] [2295] [2296] Underfull \hbox (badness 10000) in paragraph at lines 5989--5992 []\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2297] Underfull \hbox (badness 2478) in paragraph at lines 6101--6106 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "lde nseMatrix"\T1/ptm/m/n/10 . Class [2298] Underfull \hbox (badness 10000) in paragraph at lines 6109--6112 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2299] Underfull \hbox (badness 10000) in paragraph at lines 6301--6304 []\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2300] Underfull \hbox (badness 10000) in paragraph at lines 6399--6402 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2301] Underfull \hbox (badness 10000) in paragraph at lines 6474--6477 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2302] Underfull \hbox (badness 2050) in paragraph at lines 6550--6553 []\T1/zi4/m/sl/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth -ods for dif-fer-ent types of ma-tri-ces. Use [2303] [2304] [2305] Underfull \hbox (badness 6268) in paragraph at lines 6756--6759 []\T1/ptm/m/n/10 Note that when the re-sult-ing ma-trix is di-ag-o-nal (``math- e-mat-i-cally''), [2306] Underfull \hbox (badness 6268) in paragraph at lines 6780--6784 []\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1 /ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/sl/10 matrix[][][]\T1/ptm/m/n/1 0 . How-ever, [2307]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det }) has been already used, duplicate ignored \relax l.6873 \aliasA{det}{Matrix-class}{det} Underfull \hbox (badness 1527) in paragraph at lines 6966--6968 []\T1/zi4/m/sl/10 signature(x = "Matrix")\T1/ptm/m/n/10 : sim-ply de-fined as \ T1/zi4/m/sl/10 prod(dim(x)) \T1/ptm/m/n/10 (and hence of mode Underfull \hbox (badness 4846) in paragraph at lines 6971--6974 []\T1/zi4/m/sl/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1 /zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 6976--6979 [2308]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.7049 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.7157 ...A{crossprod}{matrix-products}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.7257 ...tcrossprod}{matrix-products}{tcrossprod} [2309pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod.Rdash.methods}) has be en already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7361 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.tc rossprod.Rdash.methods}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7361 ] [2310] Underfull \hbox (badness 10000) in paragraph at lines 7431--7436 []\T1/zi4/m/sl/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use Underfull \hbox (badness 1448) in paragraph at lines 7431--7436 \T1/zi4/m/sl/10 showMethods("%*%",class="dtrMatrix")\T1/ptm/m/n/10 ): ma-trix m ul-ti-pli-ca-tion. Mul-ti-pli-ca-tion of Underfull \hbox (badness 10000) in paragraph at lines 7440--7442 []\T1/zi4/m/sl/10 signature(x = "CsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/sl/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 10000) in paragraph at lines 7442--7444 []\T1/zi4/m/sl/10 signature(x = "TsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/sl/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 1264) in paragraph at lines 7446--7447 []\T1/zi4/m/sl/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures, see [2311] [2312] Underfull \hbox (badness 1430) in paragraph at lines 7590--7595 []\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/sl/10 "MatrixFactorizatio n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/sl/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1 /zi4/m/sl/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 CHMfactor[][][] \T1/ptm/m/n/10 , and [2313] Underfull \hbox (badness 10000) in paragraph at lines 7661--7664 []\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2314] Underfull \hbox (badness 10000) in paragraph at lines 7713--7715 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 X <-(X + t(X))/2 \T1/ ptm/m/n/10 should be done, af-ter \T1/zi4/m/sl/10 X [2315] [2316] Underfull \vbox (badness 10000) has occurred while \output is active [2317] Underfull \hbox (badness 2478) in paragraph at lines 7917--7922 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "nde nseMatrix"\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 7925--7928 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2318] [2319] Underfull \hbox (badness 5924) in paragraph at lines 8119--8121 []\T1/ptm/m/n/10 fast sim-ple meth-ods [2320]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor m}) has been already used, duplicate ignored \relax l.8159 \HeaderA{norm}{Matrix Norms}{norm} pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor ed \relax l.8159 \HeaderA{norm}{Matrix Norms}{norm} [2321] [2322] Underfull \hbox (badness 10000) in paragraph at lines 8432--8435 []\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2323] Underfull \hbox (badness 10000) in paragraph at lines 8522--8525 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2324] Underfull \hbox (badness 10000) in paragraph at lines 8598--8601 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2325] Underfull \vbox (badness 10000) has occurred while \output is active [2326] Underfull \hbox (badness 10000) in paragraph at lines 8724--8726 []\T1/zi4/m/sl/10 signature(x = "matrix",y = "pMatrix") \T1/ptm/m/n/10 and othe r sig-na-tures (use Underfull \hbox (badness 10000) in paragraph at lines 8729--8732 []\T1/zi4/m/sl/10 signature(from = "numeric",to = "pMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low [2327] [2328] [2329] [2330]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.8961 \aliasA{qr}{qr-methods}{qr} [2331] [2332] [2333] [2334]pdfTeX warning (e xt4): destination with the same identifier (name{Rfn.rcond}) has been already u sed, duplicate ignored \relax l.9257 ... the Reciprocal Condition Number}{rcond} [2335] [2336] [2337] [2338] Underfull \hbox (badness 2351) in paragraph at lines 9561--9569 []\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 ( \OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment, via one di-men-sional Underfull \hbox (badness 1852) in paragraph at lines 9561--9569 \T1/ptm/m/n/10 in-dices, if not \T1/zi4/m/sl/10 symmetric [][]sample.int[][][]( nrow*ncol,nnz)\T1/ptm/m/n/10 , then---if \T1/zi4/m/sl/10 rand.x \T1/ptm/m/n/10 is not \T1/zi4/m/sl/10 NULL\T1/ptm/m/n/10 --- Underfull \hbox (badness 2343) in paragraph at lines 9561--9569 \T1/ptm/m/n/10 gets \T1/zi4/m/sl/10 x <-rand.x(nnz) \T1/ptm/m/n/10 and calls [] []\T1/zi4/m/sl/10 sparseMatrix[][][](i=i,j=j,x=x,..)\T1/ptm/m/n/10 . When \T1/z i4/m/sl/10 rand.x=NULL\T1/ptm/m/n/10 , [2339] [2340] [2341] [2342]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.solve}) has been already used, duplicate ignored \relax l.9834 \aliasA{solve}{solve-methods}{solve} [2343] Underfull \hbox (badness 10000) in paragraph at lines 9997--10004 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list \T1/zi4/m/sl/10 ( sparse = [2344] Underfull \hbox (badness 4403) in paragraph at lines 10058--10061 []\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/sl/10 b\T1/ptm/m/n/10 , in-clud-ing \T1/zi4/m/sl/10 "missing"\T1/ptm/m/n/10 , and Underfull \hbox (badness 10000) in paragraph at lines 10128--10131 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, form a for-mu la and data frame [2345] Underfull \hbox (badness 10000) in paragraph at lines 10164--10167 []\T1/ptm/m/n/10 character string or \T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or (co -er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 10175--10179 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2346] [2347] [2348] [2349] [2350] [2351] [2352] [2353] Underfull \hbox (badness 10000) in paragraph at lines 10764--10772 []\T1/zi4/m/sl/10 signature(from = "factor",to = "sparseMatrix")\T1/ptm/m/n/10 : Co-er-cion of a fac-tor to Underfull \hbox (badness 1112) in paragraph at lines 10764--10772 \T1/zi4/m/sl/10 "sparseMatrix" \T1/ptm/m/n/10 pro-duces the ma-trix of in-di-ca -tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class [2354]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr. Q}) has been already used, duplicate ignored \relax l.10830 \aliasA{qr.Q}{sparseQR-class}{qr.Q} [2355] [2356] Underfull \hbox (badness 5036) in paragraph at lines 11016--11018 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2357] [2358] Underfull \hbox (badness 10000) in paragraph at lines 11223--11226 []\T1/zi4/m/sl/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/ m/sl/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list [2359] Underfull \vbox (badness 10000) has occurred while \output is active [2360] [2361] [2362] Underfull \hbox (badness 10000) in paragraph at lines 11492--11497 []\T1/ptm/m/n/10 The va-lid-ity checks do not re-quire a sym-met-ric \T1/zi4/m/ sl/10 Dimnames \T1/ptm/m/n/10 slot, so it can be [2363] Underfull \hbox (badness 2057) in paragraph at lines 11572--11574 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., [2364] [2365] Underfull \hbox (badness 1831) in paragraph at lines 11747--11753 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1 /zi4/m/sl/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 crossprod \T1/ptm/m/n/10 ar e de-fined [2366] Underfull \hbox (badness 1902) in paragraph at lines 11782--11786 []\T1/ptm/m/n/10 Note that \T1/zi4/m/sl/10 new(.)\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 spMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/sl/10 sparseMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/sl/10 "dgTMatrix" \T1/ptm/m/n/10 (a nd other [2367] [2368] [2369] [2370] [2371] [2372] Underfull \hbox (badness 6910) in paragraph at lines 12295--12297 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2373] [2374] [2375]) (./boot-pkg.tex [2376] Chapter 18. [2377] [2378] [2379] [2380] [2381] [2382] [2383] [2384] [2385] [2386] Underfull \hbox (badness 1297) in paragraph at lines 799--809 []\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce sses, the de-fault be-haviour [2387] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2388] Underfull \vbox (badness 10000) has occurred while \output is active [2389] [2390] Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 []\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i n-ter- Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 \T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues Underfull \hbox (badness 1859) in paragraph at lines 1068--1072 \T1/zi4/m/sl/10 c("norm","basic","stud","perc","bca") \T1/ptm/m/n/10 or sim-ply \T1/zi4/m/sl/10 "all" \T1/ptm/m/n/10 which will [2391] Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2392] [2393] [2394] [2395] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2396] [2397] [2398] [2399] [2400] [2401] Underfull \hbox (badness 1005) in paragraph at lines 1800--1807 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/sl/10 " ordinary" \T1/ptm/m/n/10 (case re-sam-pling), [2402] [2403] Underfull \vbox (badness 10000) has occurred while \output is active [2404] Underfull \hbox (badness 7379) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2405] [2406] [2407] [2408] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2409] Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2410] [2411] Underfull \hbox (badness 2970) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/s l/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/sl/10 n \T1/ptm/m/n/10 is t he sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if \T1/zi4/m/sl/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/sl /10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/sl/10 1/n \T1/ptm/m/n /10 is used. This is mul-ti-plied by [2412] [2413] [2414] [2415] [2416] [2417] [2418] [2419] [2420] [2421] [2422] [2423] [2424] [2425] [2426] [2427] [2428] [2429] [2430] [2431] [2432] [2433] [2434] Underfull \hbox (badness 10000) in paragraph at lines 4190--4192 []\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault is [2435] [2436] [2437] [2438] [2439] [2440] [2441] [2442] [2443] [2444] [2445] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2446] [2447] [2448] [2449] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2450] [2451] [2452] [2453] [2454] [2455] [2456] [2457] [2458] [2459] [2460] Underfull \hbox (badness 4954) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/sl/10 "sa ddle.distn"\T1/ptm/m/n/10 . See the help file for [2461] [2462] [2463] [2464] [2465] [2466] [2467] [2468] [2469] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2470] [2471] [2472] [2473] [2474] [2475] [2476] [2477] [2478] [2479]) (./class-pkg.tex [2480] Chapter 19. [2481] [2482] [2483] [2484] [2485] [2486] [2487] [2488] [2489] [2490] [2491] [2492] [2493] [2494] [2495] [2496]) (./cluster-pkg.tex Chapter 20. [2497] [2498] [2499] [2500] [2501] Underfull \vbox (badness 7777) has occurred while \output is active [2502] [2503] [2504] [2505] [2506] Underfull \hbox (badness 4144) in paragraph at lines 688--691 []\T1/ptm/m/n/10 Setting this to \T1/zi4/m/sl/10 FALSE \T1/ptm/m/n/10 saves mem -ory (and hence time), but dis-ables [2507] Underfull \hbox (badness 1412) in paragraph at lines 771--776 []\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][]\T1/zi4/m/sl/10 agnes[][][]\T1/ ptm/m/n/10 ), orig-i-nally. Met-ric \T1/zi4/m/sl/10 "jaccard"\T1/ptm/m/n/10 : K amil Ko-zlowski [2508] [2509] Underfull \hbox (badness 10000) in paragraph at lines 864--866 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2510] [2511] Underfull \hbox (badness 10000) in paragraph at lines 975--977 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 989--993 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2512] [2513] [2514] Underfull \hbox (badness 6110) in paragraph at lines 1190--1194 []\T1/ptm/m/n/10 when \T1/zi4/m/sl/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/ m/sl/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/sl/10 data \T1/ptm/m/n/10 com-po-ne nt, e.g., for [2515] [2516] [2517] Underfull \hbox (badness 10000) in paragraph at lines 1459--1462 [2518] [2519] Underfull \hbox (badness 2503) in paragraph at lines 1571--1574 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "hclust" \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2520] [2521] [2522] [2523] [2524] [2525] [2526] [2527] Underfull \hbox (badness 10000) in paragraph at lines 2162--2165 Underfull \hbox (badness 10000) in paragraph at lines 2176--2182 [][][]\T1/zi4/m/sl/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the [][]\T1/zi4/m/sl/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/sl/10 ell ipsoid \T1/ptm/m/n/10 ob-jects. [2528] [2529] [2530] [2531] Underfull \hbox (badness 6675) in paragraph at lines 2411--2413 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2532] [2533] [2534] [2535] [2536] [2537] [2538] Underfull \hbox (badness 2980) in paragraph at lines 2902--2906 [][][]\T1/zi4/m/sl/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc es; [][]\T1/zi4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cl ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 daisy[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [2539] [2540] [2541] [2542] [2543] Underfull \hbox (badness 1142) in paragraph at lines 3243--3246 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2544] [2545] Underfull \hbox (badness 1142) in paragraph at lines 3362--3365 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2546] [2547] [2548] [2549] Underfull \hbox (badness 2582) in paragraph at lines 3585--3590 [][][]\T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clusplot.default [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi 4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clara[][][]\T1/p tm/m/n/10 , [2550] Underfull \hbox (badness 3209) in paragraph at lines 3647--3652 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi 4/m/sl/10 plot([][]as.hclust[][][](x),...)\T1/ptm/m/n/10 , which Underfull \hbox (badness 8019) in paragraph at lines 3647--3652 \T1/ptm/m/n/10 dis-patches to [][]\T1/zi4/m/sl/10 plot.hclust[][][](..)\T1/ptm/ m/n/10 . If more flex-i-ble plots are needed, con-sider \T1/zi4/m/sl/10 xx [2551] [2552] [2553] [2554] Underfull \hbox (badness 10000) in paragraph at lines 3939--3941 []\T1/ptm/m/n/10 a \T1/zi4/m/sl/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T 1/zi4/m/sl/10 summary.dissimilarity \T1/ptm/m/n/10 one for [2555] [2556] [2557] [2558] Underfull \hbox (badness 2626) in paragraph at lines 4163--4168 []\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/sl/10 barplot[][][]()\T1/ptm/m/ n/10 ; note that the de-fault used to be \T1/zi4/m/sl/10 col = [2559] Underfull \hbox (badness 1383) in paragraph at lines 4241--4246 []\T1/ptm/m/n/10 While \T1/zi4/m/sl/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m /it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/sl/10 partition[][][] \T 1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2560] [2561] [2562] [2563] [2564] [2565] [2566] Underfull \hbox (badness 10000) in paragraph at lines 4684--4686 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/sl/10 xclara.dat\T1/ptm/m/n/10 ' in side [2567] [2568]) (./codetools-pkg.tex Chapter 21. [2569] [2570] [2571] [2572] [2573]) (./foreign-pkg.tex [2574] Chapter 22. [2575] [2576] [2577] [2578] [2579] [2580] [2581] [2582] Underfull \hbox (badness 10000) in paragraph at lines 506--515 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer- Underfull \hbox (badness 10000) in paragraph at lines 506--515 \T1/ptm/m/n/10 ent lev-els. For \T1/zi4/m/sl/10 "append" \T1/ptm/m/n/10 (the de -fault), the first orig-i-nal value Underfull \hbox (badness 10000) in paragraph at lines 506--515 \T1/ptm/m/n/10 la-bel is kept while fur-ther du-pli-cated la-bels are re-named to [2583] Overfull \hbox (6.73795pt too wide) in paragraph at lines 625--625 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2584] [2585] [2586] Underfull \hbox (badness 10000) in paragraph at lines 813--814 [2587] [2588] [2589] [2590] [2591] [2592] [2593] Underfull \hbox (badness 10000) in paragraph at lines 1269--1275 []\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/sl/10 foreign :::writeForeignStata\T1/ptm/m/n/10 , [2594] [2595]) (./lattice-pkg.tex [2596] Chapter 23. [2597] [2598] [2599] [2600] [2601] [2602] [2603] [2604] [2605] [2606] [2607] [2608] [2609] [2610] [2611] [2612] Underfull \hbox (badness 1062) in paragraph at lines 1398--1402 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2613] Underfull \vbox (badness 4416) has occurred while \output is active [2614] Underfull \hbox (badness 1803) in paragraph at lines 1566--1583 [][][]\T1/zi4/m/sl/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack- age, as well as [][]\T1/zi4/m/sl/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 print.trellis[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1583 [][]\T1/zi4/m/sl/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 p anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.loess[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/sl/10 strip.default[][][]\T1/ptm/m/n/10 , [2615] [2616] [2617] Underfull \hbox (badness 3009) in paragraph at lines 1725--1727 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/sl/10 xyplot[][ ][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1755--1759 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2618] [2619] [2620] [2621] [2622] Underfull \hbox (badness 10000) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 When \T1/zi4/m/sl/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, the value of [2623] [2624] [2625] [2626] [2627] [2628] [2629] [2630] [2631] [2632] Underfull \hbox (badness 2781) in paragraph at lines 2848--2850 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/sl/10 col. regions \T1/ptm/m/n/10 ar-gu-ment in [2633] Underfull \hbox (badness 2486) in paragraph at lines 2959--2963 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2634] [2635] [2636] [2637] [2638] [2639] [2640]pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.parallel}) has been already used, duplic ate ignored \relax l.3431 \aliasA{parallel}{B\_08\_splom}{parallel} [2641] [2642] [2643] [2644] [2645] [2646] [2647] Underfull \hbox (badness 5696) in paragraph at lines 3922--3926 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 10000) in paragraph at lines 3922--3926 \T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/sl/10 lattice.options(default.theme = "col.whitebg")\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3922--3926 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2648] [2649] Underfull \hbox (badness 1173) in paragraph at lines 4061--4065 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4088--4090 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2650] [2651] [2652] Underfull \hbox (badness 3492) in paragraph at lines 4284--4294 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/sl/10 col \T1/ptm/m/n/10 is used for com-po-nents \T1/zi4/m/sl/10 "plot.symbol"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4309--4312 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 plo t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 plot.polygon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4312--4314 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 p lot.polygon \T1/ptm/m/n/10 and [2653] [2654] [2655] [2656] [2657] [2658] [2659] [2660] [2661] [2662] Underfull \hbox (badness 6157) in paragraph at lines 5035--5038 []\T1/zi4/m/sl/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles via rect-an-gles. \T1/zi4/m/sl/10 print.shingle \T1/ptm/m/n/10 and [2663] [2664] [2665] [2666] [2667] [2668] Underfull \hbox (badness 10000) in paragraph at lines 5486--5489 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5486--5489 \T1/zi4/m/sl/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le ft of pan-els us-ing [2669] [2670] [2671] [2672] [2673] Underfull \hbox (badness 4805) in paragraph at lines 5846--5850 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 5857--5864 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t ra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 5857--5864 \T1/zi4/m/sl/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/sl/10 panel.identi fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 5857--5864 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z i4/m/sl/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 5857--5864 \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar e used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 5857--5864 [][]\T1/zi4/m/sl/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th e cho-sen view-port if so re-quested. [2674] [2675] [2676] [2677] Underfull \hbox (badness 4242) in paragraph at lines 6157--6162 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6157--6162 \T1/ptm/m/n/10 ter \T1/zi4/m/sl/10 plot.polygon \T1/ptm/m/n/10 is used if there is no group-ing vari-able, oth-er-wise [2678] [2679] Underfull \hbox (badness 2310) in paragraph at lines 6273--6278 []\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/sl/10 x \T1/ptm/m/n/ 10 for ev-ery level of \T1/zi4/m/sl/10 y \T1/ptm/m/n/10 (or the other way round if [2680] [2681] [2682] [2683] [2684] [2685] [2686] [2687] [2688] [2689] [2690] Underfull \hbox (badness 3168) in paragraph at lines 7055--7059 \T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. U se [2691] [2692] [2693] [2694] Underfull \hbox (badness 2012) in paragraph at lines 7326--7329 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2695] [2696] Underfull \hbox (badness 3333) in paragraph at lines 7498--7500 []\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/sl/10 plot.symbol \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 plot.line \T1/ptm/m/n/10 us-ing [2697] [2698] [2699] Underfull \vbox (badness 10000) has occurred while \output is active [2700] [2701] [2702] Underfull \hbox (badness 1436) in paragraph at lines 7912--7918 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2703] [2704] [2705] [2706] [2707] [2708] [2709] [2710] Underfull \hbox (badness 10000) in paragraph at lines 8470--8473 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/sl/10 panel.superp ose \T1/ptm/m/n/10 from [2711] Underfull \hbox (badness 1092) in paragraph at lines 8516--8518 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/sl/10 \T1/ptm/m/n/10 (\T1/zi4/m/sl/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally con- [2712] [2713] Underfull \hbox (badness 3895) in paragraph at lines 8677--8680 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/sl/10 type \T 1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2714] Underfull \hbox (badness 1515) in paragraph at lines 8753--8757 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2715] [2716] Underfull \hbox (badness 6316) in paragraph at lines 8859--8864 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in Underfull \hbox (badness 5908) in paragraph at lines 8876--8879 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/sl/10 xscale.c omponents.default \T1/ptm/m/n/10 and [2717] [2718] [2719] [2720] Overfull \hbox (1.94879pt too wide) in paragraph at lines 9164--9168 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4 /m/sl/10 left,right,left.name,right.name,condition [2721] [2722] [2723] [2724] [2725] [2726] [2727] Underfull \hbox (badness 2310) in paragraph at lines 9622--9626 []\T1/ptm/m/n/10 Factor with lev-els \T1/zi4/m/sl/10 "Svansota"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "No. 462"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Manchuria"\T1/ptm/m /n/10 , \T1/zi4/m/sl/10 "No. 475"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Velvet"\T1/p tm/m/n/10 , Underfull \hbox (badness 3701) in paragraph at lines 9627--9630 []\T1/ptm/m/n/10 Factor with 6 lev-els: \T1/zi4/m/sl/10 "Grand Rapids"\T1/ptm/m /n/10 , \T1/zi4/m/sl/10 "Duluth"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "University Fa rm"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Morris"\T1/ptm/m/n/10 , [2728] [2729] [2730]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.9853 \aliasA{melanoma}{H\_melanoma}{melanoma} [2731] [2732] [2733] Underfull \hbox (badness 4144) in paragraph at lines 10077--10080 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10077--10080 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/sl /10 https : / / ruralhealth . und . edu / projects / [2734] [2735]) (./mgcv-pkg.tex [2736] Chapter 24. [2737] [2738] [2739] Underfull \hbox (badness 1142) in paragraph at lines 171--175 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 196--201 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2740] [2741] [2742] Underfull \vbox (badness 5345) has occurred while \output is active [2743] Underfull \hbox (badness 10000) in paragraph at lines 365--372 [][][]\T1/zi4/m/sl/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 m gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gamObject[][][]\T1/ptm/m/ n/10 , [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 smooth.terms[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 365--372 [][]\T1/zi4/m/sl/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][] [][]predict.gam[][] []\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z i4/m/sl/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gam.side[][][] \T1/ptm/m/n/10 , [2744] [2745] [2746] [2747] [2748] [2749] Underfull \hbox (badness 2205) in paragraph at lines 677--678 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-i ng evi-ron-ment vari-able [2750] [2751] Underfull \hbox (badness 1158) in paragraph at lines 787--789 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2752] Underfull \hbox (badness 1259) in paragraph at lines 850--851 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2753] Underfull \vbox (badness 10000) has occurred while \output is active [2754] [2755] [2756] [2757] [2758] [2759] [2760] [2761] [2762] [2763] [2764] [2765] [2766] [2767] [2768] [2769] [2770] [2771] [2772] [2773] [2774] [2775] [2776] Underfull \hbox (badness 1142) in paragraph at lines 2273--2277 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2777] Underfull \hbox (badness 1043) in paragraph at lines 2299--2304 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2778] [2779] [2780] [2781] [2782] Underfull \vbox (badness 10000) has occurred while \output is active [2783] Underfull \vbox (badness 10000) has occurred while \output is active [2784] Underfull \vbox (badness 10000) has occurred while \output is active [2785] [2786] [2787] [2788] [2789] [2790] [2791] [2792] [2793] [2794] [2795] [2796] [2797] [2798] Underfull \hbox (badness 10000) in paragraph at lines 3620--3624 []\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/sl/10 gam \T1/ptm/m/ n/10 mod-els us-ing \T1/zi4/m/sl/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see [2799] [2800] Underfull \vbox (badness 10000) has occurred while \output is active [2801] [2802] [2803] Underfull \hbox (badness 1184) in paragraph at lines 3906--3910 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2804] [2805] [2806] [2807] [2808] [2809] [2810] [2811] [2812] [2813] [2814] [2815] Underfull \hbox (badness 1142) in paragraph at lines 4628--4632 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2816] Underfull \hbox (badness 1231) in paragraph at lines 4732--4734 []\T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since it uses PQL. It is bet-ter to use \T1/zi4/m/sl/10 gam \T1/ptm/m/n/10 with [2817] [2818] [2819] Underfull \vbox (badness 10000) has occurred while \output is active [2820] [2821] [2822] [2823] Underfull \hbox (badness 2181) in paragraph at lines 5176--5177 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2824] [2825] [2826] [2827] [2828] [2829] [2830] Underfull \hbox (badness 10000) in paragraph at lines 5565--5566 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by \T1/zi4/m/sl/10 gam(... ,fit=FALSE) \T1/ptm/m/n/10 or [2831] [2832] [2833] [2834] [2835] [2836] [2837] [2838] [2839] Underfull \hbox (badness 1142) in paragraph at lines 6068--6072 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2840] [2841] [2842] [2843] [2844] [2845] [2846] [2847] Underfull \hbox (badness 1087) in paragraph at lines 6438--6439 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 rho \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 thet a \T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this cas e, and if [2848] [2849] Underfull \vbox (badness 10000) has occurred while \output is active [2850] Underfull \vbox (badness 10000) has occurred while \output is active [2851] [2852] [2853] [2854] [2855] [2856] [2857] [2858] [2859] [2860] [2861] [2862] Underfull \hbox (badness 1242) in paragraph at lines 7384--7385 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [2863] [2864] [2865] [2866] Underfull \vbox (badness 10000) has occurred while \output is active [2867] [2868] [2869] [2870] [2871] [2872] [2873] [2874] Underfull \hbox (badness 6001) in paragraph at lines 8024--8026 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/sl/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [2875] [2876] [2877] [2878] [2879] [2880] [2881] [2882] [2883] [2884] Underfull \vbox (badness 10000) has occurred while \output is active [2885] [2886] Underfull \hbox (badness 1038) in paragraph at lines 8773--8776 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/sl/10 Dim. pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ sl/10 corMatrix.pdIdnot\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 8773--8776 \T1/zi4/m/sl/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdConstruct.pdId not\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ sl/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 , [2887] Underfull \hbox (badness 10000) in paragraph at lines 8829--8832 []\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/sl/10 pdTens\T1/ptm/m/n/10 , \T1/z i4/m/sl/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdTens\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdMatrix.pdTens\T1/ptm/m/n/10 , [2888] [2889] [2890] [2891] [2892] [2893] [2894] [2895] [2896] [2897] [2898] Underfull \hbox (badness 1852) in paragraph at lines 9500--9503 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and [2899] [2900] Underfull \hbox (badness 1852) in paragraph at lines 9666--9669 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and [2901] [2902] Underfull \vbox (badness 10000) has occurred while \output is active [2903] Underfull \vbox (badness 10000) has occurred while \output is active [2904] Underfull \hbox (badness 1205) in paragraph at lines 9898--9900 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 9898--9900 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 9904--9909 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2905] [2906] Underfull \hbox (badness 1205) in paragraph at lines 9988--9990 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 9988--9990 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [2907] [2908] [2909] Underfull \hbox (badness 1253) in paragraph at lines 10187--10189 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [2910] [2911] [2912] Underfull \hbox (badness 4792) in paragraph at lines 10373--10376 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/sl/ 10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m /n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 10373--10376 \T1/ptm/m/n/10 see [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [2913] [2914] Underfull \hbox (badness 10000) in paragraph at lines 10480--10483 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/sl/1 0 "deviance"\T1/ptm/m/n/10 , [2915] [2916] [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] Underfull \vbox (badness 10000) has occurred while \output is active [2925] Underfull \hbox (badness 3861) in paragraph at lines 11109--11112 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [2926] [2927] Underfull \hbox (badness 1320) in paragraph at lines 11222--11227 \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 b.orig = D*b.repara \T1/ptm/m/n/10 (where \T 1/zi4/m/sl/10 b.orig \T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec-tor). If ma- [2928] Underfull \hbox (badness 1975) in paragraph at lines 11328--11333 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2929] [2930] Underfull \hbox (badness 1762) in paragraph at lines 11417--11429 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/sl/10 tprs[][][]\T 1/ptm/m/n/10 ); \T1/zi4/m/sl/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr es-sion splines with [2931] [2932] [2933] Underfull \hbox (badness 7667) in paragraph at lines 11629--11635 [][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one or two vari-ables, spec-i-fied via terms like [2934] Underfull \hbox (badness 10000) in paragraph at lines 11670--11671 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2935] [2936] [2937] [2938] Underfull \vbox (badness 10000) has occurred while \output is active [2939] Underfull \hbox (badness 10000) in paragraph at lines 11946--11948 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2940] [2941] Underfull \hbox (badness 10000) in paragraph at lines 12074--12075 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2942] [2943] [2944] Underfull \hbox (badness 1436) in paragraph at lines 12212--12219 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) \T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 only al-lows one [2945] [2946] Underfull \hbox (badness 10000) in paragraph at lines 12306--12307 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2947] [2948] [2949] [2950] [2951] [2952] [2953] [2954] [2955] [2956] Underfull \hbox (badness 10000) in paragraph at lines 12894--12900 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 1292) in paragraph at lines 12894--12900 \T1/zi4/m/sl/10 s(...,bs="so",xt=list(bnd=bnd,...)) \T1/ptm/m/n/10 term in a \T 1/zi4/m/sl/10 gam \T1/ptm/m/n/10 for-mula. Note [2957] [2958] [2959] Underfull \vbox (badness 10000) has occurred while \output is active [2960] Underfull \vbox (badness 10000) has occurred while \output is active [2961] [2962] Underfull \hbox (badness 10000) in paragraph at lines 13237--13238 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2963] [2964] [2965] [2966] Underfull \hbox (badness 3895) in paragraph at lines 13498--13501 [][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any num-ber of vari-ables, spec-i-fied via terms like [2967] Underfull \hbox (badness 10000) in paragraph at lines 13543--13545 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2968] [2969] [2970] [2971] Underfull \hbox (badness 1371) in paragraph at lines 13760--13766 []\T1/zi4/m/sl/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive smooths are avail-able (see Underfull \hbox (badness 10000) in paragraph at lines 13800--13804 [][][]\T1/zi4/m/sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/sl/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/ zi4/m/sl/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cubic.regre ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 p.spline[][][]\T1/ptm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 13800--13804 [][]\T1/zi4/m/sl/10 mrf[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 soap[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Spherical.Spline[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 user.de fined.smooth[][][]\T1/ptm/m/n/10 , Overfull \hbox (46.8009pt too wide) in paragraph at lines 13800--13804 [][]\T1/zi4/m/sl/10 smooth.construct.re.smooth.spec[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/sl/10 smooth.construct.gp.smooth.spec[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4 /m/sl/10 factor.smooth.interaction[][][] [2972] [2973] [2974] [2975] Underfull \hbox (badness 2326) in paragraph at lines 14005--14012 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][]\T1/zi4/m/sl/10 smooth.construct[][][] \T1/ptm/m/n/10 and [2976] Underfull \hbox (badness 2158) in paragraph at lines 14090--14090 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [2977] [2978] [2979] [2980] [2981] [2982] [2983] [2984] [2985] [2986] [2987] Underfull \vbox (badness 10000) has occurred while \output is active [2988] [2989] [2990] [2991] [2992] [2993] [2994] [2995] [2996] [2997] [2998] [2999] [3000] [3001] [3002] [3003] Underfull \hbox (badness 1796) in paragraph at lines 15741--15744 []\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/sl/10 persp[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/ sl/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar [3004] [3005] [3006] [3007] [3008] [3009] [3010] [3011]) (./nlme-pkg.tex [3012] Chapter 25. [3013] [3014] [3015] [3016] [3017] [3018] [3019] [3020] [3021] [3022] [3023] [3024] [3025] [3026] [3027] [3028] [3029] [3030] [3031] [3032] [3033] [3034] [3035] [3036] [3037] [3038] [3039] [3040] [3041] [3042] Underfull \hbox (badness 2875) in paragraph at lines 1994--2000 []\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat- ing a co-vari-ate Underfull \hbox (badness 1466) in paragraph at lines 1994--2000 \T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/sl/10 displayLevel \T1/ptm/m/n/1 0 group-ing fac-tor. If equal to \T1/zi4/m/sl/10 TRUE\T1/ptm/m/n/10 , [3043] [3044] [3045] [3046] Underfull \hbox (badness 10000) in paragraph at lines 2256--2262 [][][]\T1/zi4/m/sl/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corARMA [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/sl/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initi alize.corStruct[][][]\T1/ptm/m/n/10 , [3047] [3048] [3049] [3050] [3051] [3052] [3053] [3054] [3055] [3056] [3057] [3058] [3059] [3060] [3061] [3062] [3063] [3064] [3065] [3066] [3067] [3068] [3069] [3070] [3071] [3072] [3073] [3074] [3075] [3076] [3077] [3078] [3079] Underfull \hbox (badness 1067) in paragraph at lines 4414--4419 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3080] [3081] [3082] [3083] [3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] Underfull \hbox (badness 10000) in paragraph at lines 5160--5164 [][][]\T1/zi4/m/sl/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/ m/sl/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getCo variate.varFunc[][][]\T1/ptm/m/n/10 , [3092] [3093] [3094] [3095] [3096] [3097] [3098] Underfull \hbox (badness 10000) in paragraph at lines 5592--5595 [][][]\T1/zi4/m/sl/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.gls[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.lmList[][][]\T1/ptm/m/n/10 , [3099] [3100] [3101] [3102] [3103] [3104] [3105] Underfull \hbox (badness 10000) in paragraph at lines 5973--5978 [][][]\T1/zi4/m/sl/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ sl/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGrou psFormula.lme[][][]\T1/ptm/m/n/10 , [3106] [3107] [3108] [3109] Underfull \hbox (badness 1490) in paragraph at lines 6243--6254 [][][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsC ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsObject[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot. gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 qqnorm.gls[][][]\T1/ptm/m/n/10 , [3110] Underfull \hbox (badness 10000) in paragraph at lines 6307--6309 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3111] [3112] [3113] [3114] [3115] [3116] Underfull \hbox (badness 10000) in paragraph at lines 6721--6723 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3117] [3118] [3119] [3120] Underfull \hbox (badness 10000) in paragraph at lines 6994--7001 [][][]\T1/zi4/m/sl/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gapply[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nffGroupedData [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nfnGroupedData[][][]\T1/ptm/m/n /10 , [3121] [3122] [3123] [3124] Underfull \hbox (badness 10000) in paragraph at lines 7254--7259 [][][]\T1/zi4/m/sl/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ sl/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initialize .glsStruct[][][]\T1/ptm/m/n/10 , [3125] [3126] [3127] [3128] [3129] [3130] [3131] [3132] [3133] [3134] [3135] [3136] [3137] [3138] [3139] [3140] [3141] [3142] [3143] Underfull \hbox (badness 10000) in paragraph at lines 8521--8523 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3144]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sig ma}) has been already used, duplicate ignored \relax l.8572 \aliasA{sigma}{lmeObject}{sigma} [3145] [3146] [3147] [3148] Underfull \hbox (badness 10000) in paragraph at lines 8802--8809 [][][]\T1/zi4/m/sl/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 lme.lmList[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/sl/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.lmLi st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 residuals.lmList[][][]\T1/ptm/m/n/ 10 , [3149] [3150] [3151] [3152] [3153] [3154] [3155] [3156] Underfull \hbox (badness 10000) in paragraph at lines 9324--9331 [][][]\T1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 gls[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik .lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.lmList[][][]\T1/ptm /m/n/10 , [3157] [3158] [3159] [3160] [3161]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9686 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9686 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3162] [3163] [3164] [3165] [3166] [3167] [3168] [3169] [3170] [3171] [3172] [3173] Underfull \hbox (badness 1596) in paragraph at lines 10459--10485 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3174] [3175] Underfull \hbox (badness 1490) in paragraph at lines 10597--10603 [][][]\T1/zi4/m/sl/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlmeObject[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/sl/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pdClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 reStruct[][][]\T1/ptm/m/n/10 , [3176] [3177] [3178] [3179] Underfull \hbox (badness 10000) in paragraph at lines 10838--10840 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3180] [3181] [3182] [3183] [3184] [3185] [3186] [3187] [3188] [3189] [3190] [3191] [3192] [3193] [3194] [3195] [3196] [3197] [3198] [3199] [3200] [3201] [3202] [3203] [3204] [3205] [3206] [3207] [3208] [3209] [3210] [3211] [3212] [3213] [3214] [3215] [3216] [3217] [3218] [3219] [3220] [3221] Underfull \hbox (badness 1286) in paragraph at lines 13734--13741 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/sl /10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/sl/10 inner \T1/ptm/m/n/10 or [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] Underfull \hbox (badness 1215) in paragraph at lines 14280--14282 []\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis. De-faults to [3230] [3231] [3232] [3233] [3234] [3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.random.effects}) has been already used, duplicate ignored \relax l.15177 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15177 ...Extract Random Effects}{random.effects} [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] [3252] [3253] Underfull \hbox (badness 1067) in paragraph at lines 15888--15893 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3254] [3255] [3256] [3257] Underfull \hbox (badness 1448) in paragraph at lines 16131--16140 \T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/sl/10 "response" \T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3258] [3259] [3260] [3261] [3262] [3263] [3264] [3265] [3266] [3267] Underfull \hbox (badness 1728) in paragraph at lines 16836--16839 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3268] [3269] [3270] [3271] [3272] Underfull \hbox (badness 8056) in paragraph at lines 17171--17180 \T1/zi4/m/sl/10 Symmetry" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdCompSymm\T1/ptm/ m/n/10 , \T1/zi4/m/sl/10 "Diagonal" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdDiag\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Multiple of Underfull \hbox (badness 10000) in paragraph at lines 17171--17180 \T1/zi4/m/sl/10 an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdIdent\T1/ptm/ m/n/10 , \T1/zi4/m/sl/10 "General Positive-Definite,Natural Underfull \hbox (badness 5756) in paragraph at lines 17171--17180 \T1/zi4/m/sl/10 Parametrization" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdNatural\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 "General Positive-Definite" \T1/ptm/m/n/10 for [3273] Underfull \hbox (badness 2913) in paragraph at lines 17235--17243 \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 varComb\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Con stant plus power of covariate" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 varConstPower \T1/ptm/m/n/10 , [3274] [3275] [3276] [3277] [3278] [3279] [3280] [3281] [3282] [3283] [3284] Underfull \hbox (badness 10000) in paragraph at lines 18017--18027 [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corLin[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corRatio[][][]\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 18017--18027 [][]\T1/zi4/m/sl/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl /10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.defa ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.gls[][][]\T1/ptm/m/n/10 , [3285] [3286] [3287] [3288] [3289] Underfull \hbox (badness 5036) in paragraph at lines 18341--18350 [][][]\T1/zi4/m/sl/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Vari ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.default[][][]\T1/ptm/ m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/sl/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [3290] [3291] [3292] [3293] [3294] [3295] [3296] [3297] [3298] [3299] [3300] [3301] [3302]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.multinom.1}) has been already used, du plicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3303] Underfull \hbox (badness 1117) in paragraph at lines 78--87 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/sl/10 response ~ [3304] [3305] [3306] [3307] [3308] [3309] [3310]) (./rpart-pkg.tex Chapter 27. [3311] [3312] [3313] [3314] [3315] [3316] [3317] [3318] [3319] [3320] [3321] [3322] [3323] [3324] [3325] [3326] [3327] [3328] [3329] [3330] [3331] [3332] [3333] [3334] [3335] [3336] [3337] [3338] [3339]) (./spatial-pkg.tex [3340] Chapter 28. [3341] [3342] [3343] [3344] [3345] [3346] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3347] [3348] [3349] [3350] [3351] [3352] [3353] [3354] [3355] [3356] [3357] [3358] [3359]) (./survival-pkg.tex [3360] Chapter 29. [3361] [3362] [3363] [3364]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.aml}) has been already used, duplicate ignored \relax l.326 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica te ignored \relax l.326 ... Myelogenous Leukemia survival data}{aml} [3365] [3366] [3367] [3368] [3369] Underfull \vbox (badness 10000) has occurred while \output is active [3370] [3371] [3372] [3373] [3374] [3375] Underfull \hbox (badness 1097) in paragraph at lines 975--977 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. [3376] [3377] [3378]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) has been already used, duplicate ignored \relax l.1178 ...erapy for Stage B/C colon cancer}{colon} Underfull \vbox (badness 2698) has occurred while \output is active [3379] [3380] [3381] [3382] [3383] [3384] [3385] [3386] [3387] [3388] [3389] [3390] [3391] [3392] [3393] [3394] [3395] [3396] [3397] [3398] [3399] [3400] [3401] [3402] [3403] [3404] Underfull \hbox (badness 1389) in paragraph at lines 3055--3057 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3405] [3406] [3407] [3408] Overfull \hbox (467.89665pt too wide) in alignment at lines 3334--3334 [] [] [3409] [3410] [3411] [3412] [3413] [3414] [3415] [3416] [3417] [3418] [3419] [3420] Underfull \vbox (badness 10000) has occurred while \output is active [3421] [3422] [3423] [3424] [3425] [3426] [3427] [3428] [3429] [3430] [3431] Underfull \hbox (badness 5274) in paragraph at lines 4839--4841 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "summary.survfit"\T1/ptm/m /n/10 , which is the re-sult of the [3432] [3433] [3434] [3435] [3436] [3437] [3438] [3439] [3440] [3441] [3442] Underfull \vbox (badness 2126) has occurred while \output is active [3443] [3444] [3445] Underfull \hbox (badness 1281) in paragraph at lines 5866--5869 []\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/sl/10 "response "\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "d fbeta"\T1/ptm/m/n/10 , [3446] [3447] [3448] [3449] [3450]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.solder}) has been already used, duplicate ignored \relax l.6172 ...ata from a soldering experiment}{solder} [3451] [3452] [3453] [3454] [3455] [3456] [3457] [3458] [3459] [3460] [3461] [3462] [3463] [3464] [3465] [3466] [3467] Underfull \hbox (badness 10000) in paragraph at lines 7435--7444 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the form [3468] [3469] Underfull \hbox (badness 1038) in paragraph at lines 7591--7597 \T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d icted sur-vival [3470] [3471] [3472] [3473] [3474] Underfull \hbox (badness 10000) in paragraph at lines 7954--7959 [][][]\T1/zi4/m/sl/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 survfit.object[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/sl/10 plot.survfit[][][]\T1/ptm/m/n/10 , [3475] [3476] [3477] [3478] Underfull \hbox (badness 1389) in paragraph at lines 8235--8245 []\T1/ptm/m/n/10 One of \T1/zi4/m/sl/10 "none"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "plain"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "log" \T1/ptm/m/n/10 (the de-fault), \T 1/zi4/m/sl/10 "log-log" \T1/ptm/m/n/10 or [3479] [3480] [3481] [3482] [3483] [3484] [3485] [3486] Underfull \hbox (badness 1354) in paragraph at lines 8817--8821 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. 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[3557] [3558] [3559] Overfull \hbox (0.8567pt too wide) in paragraph at lines 6634--6636 []\T1/zi4/m/it/10 cbind2,denseMatrix,sparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 6636--6638 []\T1/zi4/m/it/10 cbind2,diagonalMatrix,sparseMatrix-method [3560] Overfull \hbox (0.8567pt too wide) in paragraph at lines 6666--6668 []\T1/zi4/m/it/10 cbind2,sparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 6668--6670 []\T1/zi4/m/it/10 cbind2,sparseMatrix,diagonalMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 6674--6676 []\T1/zi4/m/it/10 cbind2,sparseMatrix,sparseMatrix-method [3561] [3562] [3563] Overfull \hbox (10.8567pt too wide) in paragraph at lines 7398--7400 []\T1/zi4/m/it/10 coerce,atomicVector,dsparseVector-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7400--7402 []\T1/zi4/m/it/10 coerce,atomicVector,sparseVector-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 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coerce,diagonalMatrix,nsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7538--7540 []\T1/zi4/m/it/10 coerce,diagonalMatrix,sparseVector-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 7586--7588 []\T1/zi4/m/it/10 coerce,dsparseMatrix,matrix.csr-method [3566] [3567] Overfull \hbox (5.8567pt too wide) in paragraph at lines 7738--7740 []\T1/zi4/m/it/10 coerce,ldiMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7740--7742 []\T1/zi4/m/it/10 coerce,ldiMatrix,triangularMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7772--7774 []\T1/zi4/m/it/10 coerce,lgeMatrix,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7786--7788 []\T1/zi4/m/it/10 coerce,lgTMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7788--7790 []\T1/zi4/m/it/10 coerce,lgTMatrix,triangularMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at 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Transcript written on fullrefman.log. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' + /usr/bin/make -O -j8 V=1 VERBOSE=1 info make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-data.texi make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-lang.texi make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. 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R-exts.texi make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.5JzruX + umask 022 + cd /home/iurt/rpmbuild/BUILD + '[' 1 -eq 1 ']' + '[' /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64 '!=' / ']' + rm -rf /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64 ++ dirname /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64 + mkdir -p /home/iurt/rpmbuild/BUILDROOT + mkdir /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64 + cd R-3.6.3 + '[' 1 -eq 1 ']' + /usr/bin/make install DESTDIR=/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64 'INSTALL=/usr/bin/install -p' install-info mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/m4' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/m4' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tools' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tools' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc' installing doc ... mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/doc mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/man/man1 make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/html' installing doc/html ... mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/doc/html make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/html' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' installing doc/manual ... mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/doc/manual mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/doc/manual/images make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/etc' mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/etc installing etc ... make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/etc' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/share' installing share ... mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/share mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/share/R mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/share/dictionaries mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/share/encodings mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/share/java mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/share/licenses mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/share/make mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/share/Rd mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/share/Rd/macros mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/share/sh mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/share/texmf mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/share/texmf/bibtex/bib mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/share/texmf/bibtex/bst mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/share/texmf/tex/latex make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/share' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/scripts' mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/bin mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/bin make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/scripts' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/include' mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/include make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/include/R_ext' mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/include/R_ext make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/include/R_ext' make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/include' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/blas' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/blas' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tre' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tzone' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/tzone' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/xdr' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/xdr' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/intl' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra/intl' make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/extra' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/appl' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' aarch64-mageia-linux-gnu-gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -DR_HOME='"/usr/lib64/R"' \ -o Rscript ./Rscript.c mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/pkgconfig make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/unix' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/bin/exec make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/lib make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/modules make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/internet' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/lapack' make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/lapack' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules/X11' make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/modules' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library' mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library installing packages ... building HTML index ... make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/library' make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/info /usr/bin/install -p -m 644 "./dir" "/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/info" installing R info pages ... updating '/usr/share/info/dir' ... you need to adjust /usr/share/info/dir manually you need to adjust /usr/share/info/dir manually you need to adjust /usr/share/info/dir manually you need to adjust /usr/share/info/dir manually you need to adjust /usr/share/info/dir manually you need to adjust /usr/share/info/dir manually you need to adjust /usr/share/info/dir manually make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/doc/manual' + pushd src/nmath/standalone ~/rpmbuild/BUILD/R-3.6.3/src/nmath/standalone ~/rpmbuild/BUILD/R-3.6.3 + echo 'warning: %makeinstall is deprecated, try %make_install instead' warning: %makeinstall is deprecated, try %make_install instead + /usr/bin/make prefix=/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr exec_prefix=/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr bindir=/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/bin sbindir=/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/sbin sysconfdir=/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/etc datadir=/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share includedir=/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/include libdir=/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64 libexecdir=/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/libexec localstatedir=/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/var sharedstatedir=/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/var/lib mandir=/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/man infodir=/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/info install includedir=/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/include libdir=/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64 mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/include make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/include' make[1]: 'Rmath.h' is up to date. make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/src/include' + popd ~/rpmbuild/BUILD/R-3.6.3 + mv doc/manual/R-FAQ.pdf doc/manual/R-admin.pdf doc/manual/R-data.pdf doc/manual/R-exts.pdf doc/manual/R-intro.pdf doc/manual/R-ints.pdf doc/manual/R-lang.pdf doc/manual/fullrefman.pdf /home/iurt/rpmbuild/BUILD/R-3.6.3 + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/R-admin.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/doc/manual/R-admin.pdf + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/R-data.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/doc/manual/R-data.pdf + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/refman.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/doc/manual/refman.pdf + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/R-exts.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/doc/manual/R-exts.pdf + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/R-FAQ.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/doc/manual/R-FAQ.pdf + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/R-intro.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/doc/manual/R-intro.pdf + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/R-lang.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/doc/manual/R-lang.pdf + rm -rf '/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/*/latex/' + for i in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/bin/R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/bin/R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/pkgconfig/libR*.pc + sed -i 's|/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64||g' /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/bin/R + for i in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/bin/R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/bin/R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/pkgconfig/libR*.pc + sed -i 's|/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64||g' /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/bin/R + for i in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/bin/R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/bin/R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/pkgconfig/libR*.pc + sed -i 's|/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64||g' /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/pkgconfig/libR.pc + for i in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/bin/R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/bin/R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/pkgconfig/libR*.pc + sed -i 's|/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64||g' /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/pkgconfig/libRmath.pc + rm -f /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/doc/html/function.html + rm -f /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/doc/html/packages.html + rm -f /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/doc/html/search/index.txt + chmod 644 /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/MASS/scripts/ch01.R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/MASS/scripts/ch02.R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/MASS/scripts/ch03.R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/MASS/scripts/ch04.R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/MASS/scripts/ch05.R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/MASS/scripts/ch06.R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/MASS/scripts/ch07.R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/MASS/scripts/ch08.R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/MASS/scripts/ch09.R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/MASS/scripts/ch10.R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/MASS/scripts/ch11.R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/MASS/scripts/ch12.R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/MASS/scripts/ch13.R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/MASS/scripts/ch14.R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/MASS/scripts/ch15.R /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/MASS/scripts/ch16.R + chmod 755 /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/share/sh/echo.sh + mkdir -p /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/applications + cat + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/16x16/apps + convert -scale 16x16 /home/iurt/rpmbuild/SOURCES/Rlogo-3.6.3.png /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/16x16/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/22x22/apps + convert -scale 22x22 /home/iurt/rpmbuild/SOURCES/Rlogo-3.6.3.png /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/22x22/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/24x24/apps + convert -scale 24x24 /home/iurt/rpmbuild/SOURCES/Rlogo-3.6.3.png /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/24x24/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/32x32/apps + convert -scale 32x32 /home/iurt/rpmbuild/SOURCES/Rlogo-3.6.3.png /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/32x32/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/48x48/apps + convert -scale 48x48 /home/iurt/rpmbuild/SOURCES/Rlogo-3.6.3.png /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/48x48/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/64x64/apps + convert -scale 64x64 /home/iurt/rpmbuild/SOURCES/Rlogo-3.6.3.png /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/64x64/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/96x96/apps + convert -scale 96x96 /home/iurt/rpmbuild/SOURCES/Rlogo-3.6.3.png /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/96x96/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/128x128/apps + convert -scale 128x128 /home/iurt/rpmbuild/SOURCES/Rlogo-3.6.3.png /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/128x128/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/192x192/apps + convert -scale 192x192 /home/iurt/rpmbuild/SOURCES/Rlogo-3.6.3.png /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/192x192/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/256x256/apps + convert -scale 256x256 /home/iurt/rpmbuild/SOURCES/Rlogo-3.6.3.png /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/256x256/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/512x512/apps + convert -scale 512x512 /home/iurt/rpmbuild/SOURCES/Rlogo-3.6.3.png /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/512x512/apps/Rlogo.png + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/scalable/apps + /usr/bin/install -m644 /home/iurt/rpmbuild/SOURCES/Rlogo-3.6.3.svg /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/icons/hicolor/scalable/apps/Rlogo.svg + rm -f /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/info/dir '/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/info/dir.old*' + rm -rf /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/share/perl/File + rm -rf /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/share/perl/Text + mkdir -p /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/etc/bash_completion.d + cp /home/iurt/rpmbuild/SOURCES/R.bash_completion /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/etc/bash_completion.d/R-base + /usr/lib/rpm/find-debuginfo.sh -j16 --strict-build-id -m -i --build-id-seed 3.6.3-3.mga8 --unique-debug-suffix -3.6.3-3.mga8.aarch64 --unique-debug-src-base R-base-3.6.3-3.mga8.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /home/iurt/rpmbuild/BUILD/R-3.6.3 explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/grDevices/libs/cairo.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/cluster/libs/cluster.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/MASS/libs/MASS.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/bin/Rscript explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/bin/exec/R explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/foreign/libs/foreign.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/graphics/libs/graphics.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/bin/Rscript explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/lib/libR.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/grid/libs/grid.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/lattice/libs/lattice.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/KernSmooth/libs/KernSmooth.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/grDevices/libs/grDevices.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/grDevices/libs/cairo.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/MASS/libs/MASS.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/class/libs/class.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/Matrix/libs/Matrix.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/bin/exec/R extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/lib/libR.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/graphics/libs/graphics.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/grid/libs/grid.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/bin/Rscript extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/bin/Rscript extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/KernSmooth/libs/KernSmooth.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/grDevices/libs/grDevices.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/Matrix/libs/Matrix.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/lattice/libs/lattice.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/class/libs/class.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/cluster/libs/cluster.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/methods/libs/methods.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/foreign/libs/foreign.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/methods/libs/methods.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/mgcv/libs/mgcv.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/mgcv/libs/mgcv.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/nnet/libs/nnet.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/parallel/libs/parallel.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/nnet/libs/nnet.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/rpart/libs/rpart.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/nlme/libs/nlme.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/rpart/libs/rpart.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/parallel/libs/parallel.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/nlme/libs/nlme.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/spatial/libs/spatial.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/splines/libs/splines.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/spatial/libs/spatial.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/stats/libs/stats.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/tcltk/libs/tcltk.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/splines/libs/splines.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/survival/libs/survival.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/stats/libs/stats.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/tcltk/libs/tcltk.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/survival/libs/survival.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/tools/libs/tools.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/tools/libs/tools.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/utils/libs/utils.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/library/utils/libs/utils.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/modules/R_X11.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/modules/R_X11.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/modules/R_de.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/modules/R_de.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/modules/internet.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/modules/internet.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/modules/lapack.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/modules/lapack.so explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/libRmath.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/libRmath.so original debug info size: 29488kB, size after compression: 27072kB /usr/lib/rpm/sepdebugcrcfix: Updated 33 CRC32s, 0 CRC32s did match. 19557 blocks + '[' -n '' ']' + /usr/share/spec-helper/clean_files + '[' -n '' ']' + /usr/share/spec-helper/compress_files .xz + '[' -n '' ']' + /usr/share/spec-helper/relink_symlinks + '[' -n '' ']' + /usr/share/spec-helper/clean_perl + '[' -n '' ']' + /usr/share/spec-helper/lib_symlinks + '[' -n '' ']' + /usr/share/spec-helper/gprintify + '[' -n '' ']' + /usr/share/spec-helper/fix_mo + '[' -n '' ']' + /usr/share/spec-helper/translate_menu + '[' -n '' ']' + /usr/share/spec-helper/fix_pamd + '[' -n '' ']' + /usr/share/spec-helper/remove_info_dir + '[' -n '' ']' + /usr/share/spec-helper/fix_eol + '[' -n '' ']' + /usr/share/spec-helper/check_desktop_files + '[' -n '' ']' + /usr/share/spec-helper/check_elf_files + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1 + /usr/lib/rpm/brp-python-hardlink + /usr/bin/true Executing(%check): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.Y9VaOY + umask 022 + cd /home/iurt/rpmbuild/BUILD + cd R-3.6.3 + '[' 1 -eq 1 ']' + TZ=UTC + LC_ALL=UTF-8 + make check make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests/Examples' Testing examples for package ‘base’ Testing examples for package ‘tools’ comparing ‘tools-Ex.Rout’ to ‘tools-Ex.Rout.save’ ... OK Testing examples for package ‘utils’ Testing examples for package ‘grDevices’ comparing ‘grDevices-Ex.Rout’ to ‘grDevices-Ex.Rout.save’ ... OK Testing examples for package ‘graphics’ comparing ‘graphics-Ex.Rout’ to ‘graphics-Ex.Rout.save’ ... OK Testing examples for package ‘stats’ comparing ‘stats-Ex.Rout’ to ‘stats-Ex.Rout.save’ ... OK Testing examples for package ‘datasets’ comparing ‘datasets-Ex.Rout’ to ‘datasets-Ex.Rout.save’ ... OK Testing examples for package ‘methods’ Testing examples for package ‘grid’ comparing ‘grid-Ex.Rout’ to ‘grid-Ex.Rout.save’ ... OK Testing examples for package ‘splines’ comparing ‘splines-Ex.Rout’ to ‘splines-Ex.Rout.save’ ... OK Testing examples for package ‘stats4’ comparing ‘stats4-Ex.Rout’ to ‘stats4-Ex.Rout.save’ ... OK Testing examples for package ‘tcltk’ Testing examples for package ‘compiler’ Testing examples for package ‘parallel’ make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests/Examples' make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' running strict specific tests make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' running code in 'eval-etc.R' ... OK comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK running code in 'simple-true.R' ... OK comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK running code in 'arith-true.R' ... OK comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK running code in 'arith.R' ... OK comparing 'arith.Rout' to './arith.Rout.save' ... OK running code in 'lm-tests.R' ... OK comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK running code in 'ok-errors.R' ... OK comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK running code in 'method-dispatch.R' ... OK comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK running code in 'any-all.R' ... OK comparing 'any-all.Rout' to './any-all.Rout.save' ... OK running code in 'd-p-q-r-tests.R' ... OK comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' running sloppy specific tests make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' running code in 'complex.R' ... OK comparing 'complex.Rout' to './complex.Rout.save' ... OK running code in 'eval-etc-2.R' ... OK comparing 'eval-etc-2.Rout' to './eval-etc-2.Rout.save' ... OK running code in 'print-tests.R' ... OK comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK running code in 'lapack.R' ... OK comparing 'lapack.Rout' to './lapack.Rout.save' ... OK running code in 'datasets.R' ... OK comparing 'datasets.Rout' to './datasets.Rout.save' ... OK running code in 'datetime.R' ... OK comparing 'datetime.Rout' to './datetime.Rout.save' ... OK running code in 'iec60559.R' ... OK comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' checking Sys.timezone ... make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' running code in 'timezone.R' ... OK make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' running regression tests ... make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' running code in 'array-subset.R' ... OK running code in 'reg-tests-1a.R' ... OK running code in 'reg-tests-1b.R' ... OK running code in 'reg-tests-1c.R' ... OK running code in 'reg-tests-1d.R' ... OK running code in 'reg-tests-2.R' ... OK comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK running code in 'reg-examples1.R' ... OK running code in 'reg-examples2.R' ... OK running code in 'reg-packages.R' ... OK running code in 'p-qbeta-strict-tst.R' ... OK running code in 'r-strict-tst.R' ... OK running code in 'reg-IO.R' ... OK comparing 'reg-IO.Rout' to './reg-IO.Rout.save' ... OK running code in 'reg-IO2.R' ... OK comparing 'reg-IO2.Rout' to './reg-IO2.Rout.save' ... OK running code in 'reg-plot.R' ... OK comparing 'reg-plot.pdf' to './reg-plot.pdf.save' ... OK running code in 'reg-S4-examples.R' ... OK running code in 'reg-BLAS.R' ... OK make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' running code in 'reg-tests-3.R' ... OK comparing 'reg-tests-3.Rout' to './reg-tests-3.Rout.save' ... OK running code in 'reg-examples3.R' ... OK comparing 'reg-examples3.Rout' to './reg-examples3.Rout.save' ... OK running tests of plotting Latin-1 expect failure or some differences if not in a Latin-1 or UTF-8 locale running code in 'reg-plot-latin1.R' ... OK comparing 'reg-plot-latin1.pdf' to './reg-plot-latin1.pdf.save' ... OK running code in 'reg-S4.R' ... OK comparing 'reg-S4.Rout' to './reg-S4.Rout.save' ... OK make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' running tests of Internet functions make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' running code in 'internet.R' ... OK comparing 'internet.Rout' to './internet.Rout.save' ...8,10c8,247 < Warning message: < In nsl("cran.r-project.org") : < nsl() was unable to resolve host 'cran.r-project.org' --- > > > > # test do_download (and "record" #{packages}): > > ap <- available.packages(contrib.url("http://cran.r-project.org")) > > ## IGNORE_RDIFF_END > > > > # test url connections on http > > zz <- url("http://cran.r-project.org/") > > readLines(zz) > [1] "" > [2] "" > [3] "" > [4] "The Comprehensive R Archive Network" > [5] "" > [6] "" > [7] "" > [8] "" > [9] "" > [10] "" > [11] "" > [12] "" > [13] "" > [14] "" > [15] "" > [16] "" > [17] "" > [18] "<h1>The Comprehensive R Archive Network</h1>" > [19] "" > [20] "Your browser seems not to support frames," > [21] "here is the <A href=\"navbar.html\">contents page</A> of CRAN." > [22] "" > [23] "" > > close(zz) > > > > # and via read.table, test http and ftp. > > > > read.table("http://www.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat") > V1 V2 V3 V4 V5 > 1 1 307 930 36.58 0 > 2 2 307 940 36.73 0 > 3 3 307 950 36.93 0 > 4 4 307 1000 37.15 0 > 5 5 307 1010 37.23 0 > 6 6 307 1020 37.24 0 > 7 7 307 1030 37.24 0 > 8 8 307 1040 36.90 0 > 9 9 307 1050 36.95 0 > 10 10 307 1100 36.89 0 > 11 11 307 1110 36.95 0 > 12 12 307 1120 37.00 0 > 13 13 307 1130 36.90 0 > 14 14 307 1140 36.99 0 > 15 15 307 1150 36.99 0 > 16 16 307 1200 37.01 0 > 17 17 307 1210 37.04 0 > 18 18 307 1220 37.04 0 > 19 19 307 1230 37.14 0 > 20 20 307 1240 37.07 0 > 21 21 307 1250 36.98 0 > 22 22 307 1300 37.01 0 > 23 23 307 1310 36.97 0 > 24 24 307 1320 36.97 0 > 25 25 307 1330 37.12 0 > 26 26 307 1340 37.13 0 > 27 27 307 1350 37.14 0 > 28 28 307 1400 37.15 0 > 29 29 307 1410 37.17 0 > 30 30 307 1420 37.12 0 > 31 31 307 1430 37.12 0 > 32 32 307 1440 37.17 0 > 33 33 307 1450 37.28 0 > 34 34 307 1500 37.28 0 > 35 35 307 1510 37.44 0 > 36 36 307 1520 37.51 0 > 37 37 307 1530 37.64 0 > 38 38 307 1540 37.51 0 > 39 39 307 1550 37.98 1 > 40 40 307 1600 38.02 1 > 41 41 307 1610 38.00 1 > 42 42 307 1620 38.24 1 > 43 43 307 1630 38.10 1 > 44 44 307 1640 38.24 1 > 45 45 307 1650 38.11 1 > 46 46 307 1700 38.02 1 > 47 47 307 1710 38.11 1 > 48 48 307 1720 38.01 1 > 49 49 307 1730 37.91 1 > 50 50 307 1740 37.96 1 > 51 51 307 1750 38.03 1 > 52 52 307 1800 38.17 1 > 53 53 307 1810 38.19 1 > 54 54 307 1820 38.18 1 > 55 55 307 1830 38.15 1 > 56 56 307 1840 38.04 1 > 57 57 307 1850 37.96 1 > 58 58 307 1900 37.84 1 > 59 59 307 1910 37.83 1 > 60 60 307 1920 37.84 1 > 61 61 307 1930 37.74 1 > 62 62 307 1940 37.76 1 > 63 63 307 1950 37.76 1 > 64 64 307 2000 37.64 1 > 65 65 307 2010 37.63 1 > 66 66 307 2020 38.06 1 > 67 67 307 2030 38.19 1 > 68 68 307 2040 38.35 1 > 69 69 307 2050 38.25 1 > 70 70 307 2100 37.86 1 > 71 71 307 2110 37.95 1 > 72 72 307 2120 37.95 1 > 73 73 307 2130 37.76 1 > 74 74 307 2140 37.60 1 > 75 75 307 2150 37.89 1 > 76 76 307 2200 37.86 1 > 77 77 307 2210 37.71 1 > 78 78 307 2220 37.78 1 > 79 79 307 2230 37.82 1 > 80 80 307 2240 37.76 1 > 81 81 307 2250 37.81 1 > 82 82 307 2300 37.84 1 > 83 83 307 2310 38.01 1 > 84 84 307 2320 38.10 1 > 85 85 307 2330 38.15 1 > 86 86 307 2340 37.92 1 > 87 87 307 2350 37.64 1 > 88 88 308 0 37.70 1 > 89 89 308 10 37.46 1 > 90 90 308 20 37.41 1 > 91 91 308 30 37.46 1 > 92 92 308 40 37.56 1 > 93 93 308 50 37.55 1 > 94 94 308 100 37.75 1 > 95 95 308 110 37.76 1 > 96 96 308 120 37.73 1 > 97 97 308 130 37.77 1 > 98 98 308 140 38.01 1 > 99 99 308 150 38.04 1 > 100 100 308 200 38.07 1 > > read.table("ftp://ftp.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat") > V1 V2 V3 V4 V5 > 1 1 307 930 36.58 0 > 2 2 307 940 36.73 0 > 3 3 307 950 36.93 0 > 4 4 307 1000 37.15 0 > 5 5 307 1010 37.23 0 > 6 6 307 1020 37.24 0 > 7 7 307 1030 37.24 0 > 8 8 307 1040 36.90 0 > 9 9 307 1050 36.95 0 > 10 10 307 1100 36.89 0 > 11 11 307 1110 36.95 0 > 12 12 307 1120 37.00 0 > 13 13 307 1130 36.90 0 > 14 14 307 1140 36.99 0 > 15 15 307 1150 36.99 0 > 16 16 307 1200 37.01 0 > 17 17 307 1210 37.04 0 > 18 18 307 1220 37.04 0 > 19 19 307 1230 37.14 0 > 20 20 307 1240 37.07 0 > 21 21 307 1250 36.98 0 > 22 22 307 1300 37.01 0 > 23 23 307 1310 36.97 0 > 24 24 307 1320 36.97 0 > 25 25 307 1330 37.12 0 > 26 26 307 1340 37.13 0 > 27 27 307 1350 37.14 0 > 28 28 307 1400 37.15 0 > 29 29 307 1410 37.17 0 > 30 30 307 1420 37.12 0 > 31 31 307 1430 37.12 0 > 32 32 307 1440 37.17 0 > 33 33 307 1450 37.28 0 > 34 34 307 1500 37.28 0 > 35 35 307 1510 37.44 0 > 36 36 307 1520 37.51 0 > 37 37 307 1530 37.64 0 > 38 38 307 1540 37.51 0 > 39 39 307 1550 37.98 1 > 40 40 307 1600 38.02 1 > 41 41 307 1610 38.00 1 > 42 42 307 1620 38.24 1 > 43 43 307 1630 38.10 1 > 44 44 307 1640 38.24 1 > 45 45 307 1650 38.11 1 > 46 46 307 1700 38.02 1 > 47 47 307 1710 38.11 1 > 48 48 307 1720 38.01 1 > 49 49 307 1730 37.91 1 > 50 50 307 1740 37.96 1 > 51 51 307 1750 38.03 1 > 52 52 307 1800 38.17 1 > 53 53 307 1810 38.19 1 > 54 54 307 1820 38.18 1 > 55 55 307 1830 38.15 1 > 56 56 307 1840 38.04 1 > 57 57 307 1850 37.96 1 > 58 58 307 1900 37.84 1 > 59 59 307 1910 37.83 1 > 60 60 307 1920 37.84 1 > 61 61 307 1930 37.74 1 > 62 62 307 1940 37.76 1 > 63 63 307 1950 37.76 1 > 64 64 307 2000 37.64 1 > 65 65 307 2010 37.63 1 > 66 66 307 2020 38.06 1 > 67 67 307 2030 38.19 1 > 68 68 307 2040 38.35 1 > 69 69 307 2050 38.25 1 > 70 70 307 2100 37.86 1 > 71 71 307 2110 37.95 1 > 72 72 307 2120 37.95 1 > 73 73 307 2130 37.76 1 > 74 74 307 2140 37.60 1 > 75 75 307 2150 37.89 1 > 76 76 307 2200 37.86 1 > 77 77 307 2210 37.71 1 > 78 78 307 2220 37.78 1 > 79 79 307 2230 37.82 1 > 80 80 307 2240 37.76 1 > 81 81 307 2250 37.81 1 > 82 82 307 2300 37.84 1 > 83 83 307 2310 38.01 1 > 84 84 307 2320 38.10 1 > 85 85 307 2330 38.15 1 > 86 86 307 2340 37.92 1 > 87 87 307 2350 37.64 1 > 88 88 308 0 37.70 1 > 89 89 308 10 37.46 1 > 90 90 308 20 37.41 1 > 91 91 308 30 37.46 1 > 92 92 308 40 37.56 1 > 93 93 308 50 37.55 1 > 94 94 308 100 37.75 1 > 95 95 308 110 37.76 1 > 96 96 308 120 37.73 1 > 97 97 308 130 37.77 1 > 98 98 308 140 38.01 1 > 99 99 308 150 38.04 1 > 100 100 308 200 38.07 1 > > OK make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-3.6.3/tests' + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-base-3.6.3-3.mga8.aarch64 Executing(%doc): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.a6XfOV + umask 022 + cd /home/iurt/rpmbuild/BUILD + cd R-3.6.3 + DOCDIR=/home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/doc/R-base + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/doc/R-base + cp -pr README /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/doc/R-base + cp -pr VERSION /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/doc/R-base + cp -pr R-admin.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/doc/R-base + cp -pr R-data.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/doc/R-base + cp -pr R-exts.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/doc/R-base + cp -pr R-FAQ.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/doc/R-base + cp -pr R-intro.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/doc/R-base + cp -pr R-lang.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/share/doc/R-base + RPM_EC=0 ++ jobs -p + exit 0 warning: Duplicate build-ids /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/bin/Rscript and /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib64/R/bin/Rscript Provides: R = 3.6.3 R-base = 3.6.3-3.mga8 R-base(aarch-64) = 3.6.3-3.mga8 R-recommended = 3.6.3 application() application(mageia-R-base.desktop) libR.so()(64bit) pkgconfig(libR) = 3.6.3 Requires(interp): /bin/sh /bin/sh Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /bin/sh Requires(preun): /bin/sh Requires: info-install ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libR.so()(64bit) libX11.so.6()(64bit) libXmu.so.6()(64bit) libXt.so.6()(64bit) libblas.so.3()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.27)(64bit) libcairo.so.2()(64bit) libcurl.so.4()(64bit) libdl.so.2()(64bit) libdl.so.2(GLIBC_2.17)(64bit) libgobject-2.0.so.0()(64bit) libicui18n.so.66()(64bit) libicuuc.so.66()(64bit) libjpeg.so.8()(64bit) libjpeg.so.8(LIBJPEG_8.0)(64bit) liblapack.so.3()(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpango-1.0.so.0()(64bit) libpangocairo-1.0.so.0()(64bit) libpcre.so.1()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.17)(64bit) libreadline.so.8()(64bit) libtcl8.6.so()(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) libtk8.6.so()(64bit) libz.so.1()(64bit) pkgconfig Processing files: lib64Rmath-3.6.3-3.mga8.aarch64 Provides: lib64Rmath = 3.6.3-3.mga8 lib64Rmath(aarch-64) = 3.6.3-3.mga8 libRmath.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.17)(64bit) Processing files: lib64Rmath-devel-3.6.3-3.mga8.aarch64 Provides: lib64Rmath-devel = 3.6.3-3.mga8 lib64Rmath-devel(aarch-64) = 3.6.3-3.mga8 libRmath-devel = 3.6.3-3.mga8 pkgconfig(libRmath) = 3.6.3 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: pkgconfig Processing files: R-base-debugsource-3.6.3-3.mga8.aarch64 Provides: R-base-debugsource = 3.6.3-3.mga8 R-base-debugsource(aarch-64) = 3.6.3-3.mga8 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-base-debuginfo-3.6.3-3.mga8.aarch64 warning: Duplicate build-ids /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib/debug/usr/bin/Rscript-3.6.3-3.mga8.aarch64.debug and /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64/usr/lib/debug/usr/lib64/R/bin/Rscript-3.6.3-3.mga8.aarch64.debug Provides: R-base-debuginfo = 3.6.3-3.mga8 R-base-debuginfo(aarch-64) = 3.6.3-3.mga8 debuginfo(build-id) = 02410e6ab13d7f108cc67bc04485b9894e1ea969 debuginfo(build-id) = 11ea7076d59fa6a96cc61a73c112a74edcf35136 debuginfo(build-id) = 3b9cca71785b5994b5c83da76c29572fad623042 debuginfo(build-id) = 40ff7288fa246ba4028e2a3cebc066768763b4f6 debuginfo(build-id) = 45a10d908c7ef51da6e4be32a0121ad4ccc509d0 debuginfo(build-id) = 4f3bd67666723143223f30315191411639239151 debuginfo(build-id) = 51adba380653e3b2904741c2067b4f355c874362 debuginfo(build-id) = 6aaf8ee1cb8c5812bf8c8afd132c282a36bd573f debuginfo(build-id) = 7493be8e241a15b26778995d32f1f56bc6cea964 debuginfo(build-id) = 7caca5bacffcb69f5ff285c1302288dff77c3bb7 debuginfo(build-id) = 872886d01836df12f913bdc24781e0b96fb9ada7 debuginfo(build-id) = 8a2eaa87a84a0df8a0055c02a52ff1af23b9e241 debuginfo(build-id) = 8c57d68fb5f0be5ae85eb1751ca61142f246cb14 debuginfo(build-id) = 8e17cb70cb3d8d6343251481d9392ab5726fdc8f debuginfo(build-id) = 96f17ecb66e52559bf800169a3fada9fb585140b debuginfo(build-id) = 9e19a80fb876cf9bb67b80652d4b22ecbb3352b7 debuginfo(build-id) = a2cafde7f2adef78ddc28f45e250f20200777d16 debuginfo(build-id) = a42d6a0f1a47d21f9cb51f3d070a7b07b88b6d14 debuginfo(build-id) = b40beeea521b518e1b5ee11869bbe97870a4d816 debuginfo(build-id) = c3c76c87003a5a90fd245f9b151f3947eb11e2bf debuginfo(build-id) = cc973bc64280564ab6a3c65ebb3d4ee4c086251d debuginfo(build-id) = e3c36a596e34a256e6f2f00428902fdeb100516b debuginfo(build-id) = e6aad5f362b0a61c745ae8ffcb45ab18be72c7f8 debuginfo(build-id) = e9694ccb010eaec4b5bcf6773b9e979071e84488 debuginfo(build-id) = e98cb47a6c05af08b7246e3e2b0a3e6982504377 debuginfo(build-id) = ea5b88148e4c437d697698e7308bfffae6d2ad2f debuginfo(build-id) = ebf14d20ba5eb9efd9d4f02eba530ccc756dccde debuginfo(build-id) = ebf2b444b2315ae8b7e83f4148b318d8012f8c5e debuginfo(build-id) = ec713bd8acb5685d478c721f4892d58cf3684285 debuginfo(build-id) = ece23e814da7fa2efebd02def09e54ef81a3108f debuginfo(build-id) = fc4815c67d915e10b6702861afcf9a61acc419b4 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-base-debugsource(aarch-64) = 3.6.3-3.mga8 Processing files: lib64Rmath-debuginfo-3.6.3-3.mga8.aarch64 Provides: debuginfo(build-id) = 0e923b16e9eed31a16a3755ff6fc4f4780097573 lib64Rmath-debuginfo = 3.6.3-3.mga8 lib64Rmath-debuginfo(aarch-64) = 3.6.3-3.mga8 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-base-debugsource(aarch-64) = 3.6.3-3.mga8 Checking for unpackaged file(s): /usr/lib/rpm/check-files /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64 Wrote: /home/iurt/rpmbuild/RPMS/aarch64/lib64Rmath-3.6.3-3.mga8.aarch64.rpm Wrote: /home/iurt/rpmbuild/RPMS/aarch64/lib64Rmath-debuginfo-3.6.3-3.mga8.aarch64.rpm Wrote: /home/iurt/rpmbuild/RPMS/aarch64/lib64Rmath-devel-3.6.3-3.mga8.aarch64.rpm Wrote: /home/iurt/rpmbuild/RPMS/aarch64/R-base-debugsource-3.6.3-3.mga8.aarch64.rpm Wrote: /home/iurt/rpmbuild/RPMS/aarch64/R-base-debuginfo-3.6.3-3.mga8.aarch64.rpm Wrote: /home/iurt/rpmbuild/RPMS/aarch64/R-base-3.6.3-3.mga8.aarch64.rpm Executing(%clean): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.tadrmY + umask 022 + cd /home/iurt/rpmbuild/BUILD + cd R-3.6.3 + /usr/bin/rm -rf /home/iurt/rpmbuild/BUILDROOT/R-base-3.6.3-3.mga8.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(--clean): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.RVMcAV + umask 022 + cd /home/iurt/rpmbuild/BUILD + rm -rf R-3.6.3 + RPM_EC=0 ++ jobs -p + exit 0 D: [iurt_root_command] Success!